RNA id: LOC110528963


Basic Information

Item Value
RNA id LOC110528963
length 2399
RNA type mRNA
GC content 0.52
exon number 6
gene id LOC110528963
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 50509424 ~ 50540585 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtccgggagggcactcCCCTGGGCCACggcggtgtgggagcaacaatccaccGTCTGCCTCAATCTGGAGCCTGCTGTGGGGCGACTAGTCCAAGTCTCTCCAGGTACTCATCGACTCGGGGGGCCAGGCATCCCCACTCAAcgcctctccattcccatgggtgTTAGAGCGCTGGATGTGCGCTCTATAGGCCAGGTCACCCACCAGACCACCCCCGTAAACCTACGAGTGTCGGGGAACCACAGTGAGACGATCCAATTCCTGCTAGTTGAGTTTCCGCAGGTTCCaggattctcttggctccaGACATCTTCCTGGGGCTTGGAAATTGCCCGGACCTTTCCACCTGCTCTGCATGCaaagtaccaggacctccgggaggaGTTCAGTAAGACCCGGGCCACTTCGCTTCCGCTGCACCGACCAGTATCCAAGGAGGTCAAGCCTGAGGTGCTGGCATGCCACGGCTACTATCTCCGAAGCCGAGACCCCttcagctttgaTGCTCTGGAACCTGGTGTTGTTGTCACCACGGAGGGTTCGGACAAGTTTCAGCTGCTGCACGAAGCTGAAGTCCTTCCTCCCAAAGATGGATACAGTCAGGAAGTGAACATGTCCAGCCGGGTCGTCCCTTGCCATTATCCCTGTTAAGCTAGGCCTGCACTCCATCGACGTCAAGGCTTCTGTGAAACACTCCTACAACAATGACAATGGGGTTAAGAGGGACCTTCGCATTGTGGCTGAGGGGTTGCTAGTCAAGAAGGAAACCATCATACTCCTGAACCCTGCTAAACATGGTGGGGAGCAGACGGCACACATACCCAGTGGAGTGCCTAGGAACCAGGTGCCAAACTCTGATGCTGTCACACTGATCAGTGTGCTGGTGGAGCAGGCCATCAGTGGAGACTAACTGGGCAATCTGATAGTTCAGCCAGTCGGGAGTGGGGAAGAGATCATGATATGCATGACCCTGCCTGTCATTGCTACACACTACCTGTACAACACCAAAAAGTGGGAGGAAATTGGCTTGGACAAATTAAGCACAACCATCAAGTACATCAACATAGAGCTGCCATACCGTAAATATAATGGCCCCTACACTGCCTGGGTCAGCAGAAAGAGCAGCACCTGGCTGACAGTGTATGTAGAAAAGGTGTTTGCCATGTCCAGTACTCTGATCAGTGTTCTGGAGAAAGTGCTCTGTAGTACAGCCAAGTGGCTGATCCTGCACACACAACAGCCTGATGGCATCTTCAGTGAGTTTGCTCCGGTCATTCATGCAGAGATAACAGGTAACATGAGGGGGTCGGACATTGACACCTCAATGACAGCCTTCGTTCTCATCGCCATGCAAGAGGCACGCTCACTGTGTGAGCAGTCTGTCAACAGCCTTCCAGTCAGTATGATTAAGGCAGTAACGTACCTGGAGAGGCATCTGGCCACCCTAAATAACCCCTATGCTGTAGCTATGACCTCCTATGctctggcaaatgcaggaaaacTCAACAAGGAGACCCTACTGAAGTTTGCATCTCCACAGCTGGACCACTGGCCAGTACCTGATGGTAATCAGTACACGCTGGAGGCCACATTGTACGCTGGCCTTGTTCAAGGTGAAGGCTATCGAAGAGGCCGGCCACATTGTCAAGTGGCTCAACACGCAGAATAAGGTGGGAGGGGATACGGATCCACACAGTCCACCATCATGGTGTTCCAGGCTGTGACTGAGTATTGGAGCAACGTGAAGGAACGAAAGGACATTGACCTGAACATCCACATAGAAGTGGCCGACAGAGCATCAGTTGCCAGGTGGGCCATTAACAACAAGAACCAGATCCTCAGTCATAATGACAAGGTCAACGCCATAGACAAGAACCTGACAGTAAAAAGCCTCAGGAAATATTGAGGCGACTGTGTCGGTGGTGAAGCTGTACAATGCCCAGCCAGAGGAAAAGGGCAGtgacctctctctcaccctcactaaGATGGACAAAACAAGCCAACGAGGATGCCAGCGAGTTGTTCATGCTCACTATTCAGATGGTTCATCGTAACTTGGAGAGACGCAACATTTTCTGTCCTGGACATCGGCATGCTGACAGGCTTCATTGTAGATGCAGACAATCTGAAAAAGTTGCCAGAGGGGAGGATGCACTACGTAGATACATTTGAGAGGGATAAAGTTCTGTCTGAAAGAGGCTCTCTCTATAAGGGCACAGGTAAGGTATCCCATAAGCTAGcagacaaaatatattttgagatcCACAGTTCTAAAGCCAGCTGCCGTCTCTGTATACGAGTACTACAATCAGAAGGACTGTGTGAAGTTCTACCACCTACAGAGGGAGGACGGTACCCCGAGCAGACTGTCTCTCGGAGACGTGTATGTGTGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU704377 lncRNA downstream 19829 50489424 ~ 50489644 (-) True G619126
TU704349 lncRNA downstream 51311 50457881 ~ 50458162 (-) True G619098
TU704341 lncRNA downstream 60314 50448952 ~ 50449159 (-) True G619090
TU704335 lncRNA downstream 67398 50441856 ~ 50442075 (-) True G619084
TU704332 lncRNA downstream 67847 50437433 ~ 50441626 (-) True G619081
TU704628 lncRNA upstream 10275 50550860 ~ 50558973 (-) True G619353
TU704759 lncRNA upstream 164497 50705082 ~ 50798597 (-) True G619478
TU704791 lncRNA upstream 203183 50743768 ~ 50744045 (-) True G619509
TU704799 lncRNA upstream 212507 50753092 ~ 50753595 (-) True G619514
TU704881 lncRNA upstream 298707 50839292 ~ 50839529 (-) True G619584
XM_021609616.2 mRNA downstream 203195 50300364 ~ 50306278 (-) False LOC110527964
XM_021609615.2 mRNA downstream 209336 50279611 ~ 50300137 (-) True LOC110527963
XM_021609612.2 mRNA downstream 572898 49660022 ~ 49936575 (-) False LOC110527961
XR_005052596.1 mRNA downstream 572911 49666452 ~ 49936562 (-) False LOC110527961
XR_005052595.1 mRNA downstream 572914 49660022 ~ 49936559 (-) False LOC110527961
XR_005052597.1 mRNA upstream 396624 50937209 ~ 50939964 (-) True LOC118965294
XR_005052598.1 mRNA upstream 546704 51087289 ~ 51091164 (-) False LOC118965295
XR_005052599.1 mRNA upstream 546704 51087289 ~ 51091164 (-) True LOC118965295
XM_021609626.2 mRNA upstream 556872 51097457 ~ 51112064 (-) False LOC110527971
XM_036983464.1 mRNA upstream 556872 51097457 ~ 51146059 (-) False LOC110527971
TU704151 other downstream 203317 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 573192 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 1212225 49295255 ~ 49297248 (-) True mustn1b
TU702811 other downstream 1313503 49195604 ~ 49195970 (-) True G617632
TU702803 other downstream 1323377 49184424 ~ 49186096 (-) True G617624
TU705034 other upstream 415686 50956271 ~ 50958540 (-) True G619733
TU708601 other upstream 2764951 53305536 ~ 53322831 (-) True G622985
TU711185 other upstream 4531894 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 4623907 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 4892871 55433456 ~ 55434072 (-) True LOC110528020

Expression Profile