RNA id: XM_036983451.1


Basic Information

Item Value
RNA id XM_036983451.1
length 6032
RNA type mRNA
GC content 0.55
exon number 23
gene id magi1b
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 50597192 ~ 50798627 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGCATGCGCTCATTTTACTAGCAGCACCTCTCGATCCGTACAGCACGCGGAGTGGGATAAAATATAACAAAACGTTGTACCTGCTTAAAGGAGCCGTGGTCTGTGTGGGACCACCAACCAACTCACCGCGTTTTCAAAGAAAACCTCCATTGCTTGGATCTTGAACGGAaaatattgaaagtgtttttTATAAAGAAGGAACTGAGAAACGACTTTAACAAGTGGATACTGTAGGTTAGTGGTACTTTGGCAGACGCCGAAGAGATATATAAACGAGATTACTCGGCAAGGAAGATGAGAAAAACAATACCTGCAAATTAGGACCAGCTGCTCAGGACTTCTACAGAAGTGGTCCATTGGACAAGAATGGCTTGATTTTTTTTTGCGTGAATGATGGGCAGATTTTGACAGCAGCACTCATGCTTCACGGAAAGAAAAAGAAAGTTTGTTGCGTCTGATTTGGATATTATATTCTGAGACACGTTGTGTTGTCTATATTGCTATAAATCGGCGAGACCACCTGTTTGGTGTCGGATATTCATCATGTCCAAAGTGATCCAAAAGAAGAATCACTGGACCACTAAAGTTAACGAGTGCGCGGTCCTCAAAGACGCTCGCGGTGACTTAAATGTGCAATTGCTCGGTGGTGCGGAGAACGGAGAGTTCGCCTACATCGGACAAGTTAACGATGGTATCGTGGTTTACAAAAATGGAAAATTAACAGAGGGGGCGTTGATATTGGAAGTAGAGAACCTCTCGATCTCTGGGTTGCCCCTGTATGATGTACAGACAGTGATAAAGAATTGCAGTGGTCCCATCAGATTGAGAACGGTCAGACAAGGAAACAAGCTGAATAAGGACCTGAAGCACTATCTGAGCCAGCGATTCCAGAAGTCCTCTCCGGACCACGAGCTGCAGCAGACCATCCGAGACAACCTCTACCGCCACGCCGTGCCTTGTACAACCCGTCCCCCGCGTCACGGAGAGGTCCCTGGGGTAGATTACAACTTCCTGCCGGTGGAGGACTTCCTGGCGCTGGAGCAGAGGGGAACCCTTCTGGAAATAGGAACATATGAAGGTAACTATTATGGAACACCCAAGCCACCGAGCCAGCCCCCTAGTGGGAAAGTGATTACTAGTGATGCTTTGCAAGACAGCCTCCCGGGCTCCCAGCACTCCACTCCCCGACGCACCAAGTCCTACAATGAGATGCAAAATGCTGGAATAGTGCCTGTAGACCTGGAGGAGGACGAGGAACTCCCGGAGATGAACAGTAGTTTAACagGAGACTCAAGTGAACCCGACGAGCACCCTTCCGTGCGCCCCTACGCCCTACGTGAGAACGCCCCGTCCTATGGTGTGATCAACGCGTCGTCATCCACCACGGACGGCtctcagcagacacacacacacctcagccgTCCTCCCACAGAGGAGGACCCCCTGGGACCTCTAGCTGATAACTGGGAGATGGCCTACACCGAGAACGGAGAGGTCTACTTTATAGACCACAACACAAAGACCACATCCTGGATCGACCCCCGCTGCCTCAACAAACCCCCTAAACCCCTGGAAGAATGTGAAGACGACGAAGGGGTACACACAGAAGAGATGGACAGTGAGCTAGAGCTGCCAACAGGCTGGGAGAAAATAGAGGACCCAGTCTACGGGCTTTACTATGTGGATCACATCAACAGGAAGACCCAGTATGAGAACCCTATACAGGAAGCTAAGCGGCGGAAGCAGCTCGAGCAACAGCAGCCACCAGAAGAATGGATAGAGGATGCTACCATGGCTGGTGCCCCCCTGGCCAGCTATACCGCCAACCACCAGGAGACCTACAGGGACACCCAAGCCAGACCCCCACTGCCGCCCCTCATCGGGCCAAAACGAGGGAAGCCCTTCTTCACGCGGAACCCGGCGGAGCTGAAGGGAACCTTTATCAACACCAAACTAAGGAAGAGCCACCGAGGGTTCGGCTTCACCGTCGTCGGGGGCGACGAGCCTGATGAGTTCCTACAGATCAAGAGTCTGGTTCTGGACGGACCTGCTGCCATCGACGGCAAGATGGAGACAGGTGACGTGATCGTGAGTGTCAATGACACGTGCGTGCTGGGCTACACCCACGCTCAGGTGGTGAAGGTCTTCCAGTCCATCCAGATCGGCTCCATCGTCAACCTGGAGCTGTGCCGCGGCTACCCCCTGCCCTTTGATCCAGACGACCCCAACACTAGCCTGGTGACCTCCGTGGCCATTGTGGACAAGGAGCCTATCATCATCAACGGCCAGGAGAGCTACGACTCTCCGTCCAGCCACGGCAGCCAGACCGGAGGCCCCGTTAATGGGATGAGAGAGTCAGGACCCCACAGCCCCTCCTCTGCCGAGGTGGCGTCCAACGGCTCGCACAGTTACCCCAGCGACTCTGTGACGCTGGCGTCGTCCATAGCGACGCAGCCGGAGCTGATCACAGTGCACATGGAGAAGGGAGACAAAGGCTTTGGGTTCACCATCGCAGACAGCCCTGCAGGGGGAGGACAGAGGGTCAAACAGATCGTAGACTACCCCCGCTGCAGGGGCCTGAAGGAGGGGGACATTATTGTGGAGGTGAACAAGAGGAACGTCCAGAGCATGAGCCACAACCAGGTGGTGGACCTGCTCAGCAAGTGCCCCAAAGGAAGTGAGGTCACCATGCTGGTGCAGAGAGGTGGAGGGGTGGCTCCTGCAAAGAAGAGCCCAAAGCTGCAGTTAGCGAGGAAGGACAGTCAGAACAGTCCTGTGCACAGTGTGTCCAGCCACCGGAGTACCCACACTGACTCCCCTGTGCACCCATCCCTGGCCACCCCATTCAGCGAGAGCgccgcccccccacccccctcccagCCCCTGCCCGGCCTGCCTCCCCAGGACGCTCAGGCAGACGGAACCATCCAGAGGAAACCGGACCCCTTCAAGATCTGGGCCCAGTCCAGGAGCATGTATGAAAGTAGGCTGCCTGACTTCCAGGAGCAGGACATCTTCCTGTGGAGAAAGGACACGGGCTACGGGTTCCGGATCCTGGGAGGGAACGAGCCAGGAGAGCCGatCTACATAGGGCACATAGTGAAGTACGGGGCGGCGGATGAGGACGGGCGCCTGCGTTCGGGGGATGAGCTCATCTGTGTGGATGGCACGGCGGTGGTGGGGAAGTCTCACCAGCTGGTGGTACAGCTGATGCAGCAGGCCGCCAAGCAGGGCCACGTCAACCTCACCGTGCGACGGAAGACCGGCTACGGCGGGTCTAAAGGGGAGGGCGAGGTGCCCCCGTCCCCAGCCTCGTCCCACCACAGCAGCACACAGGCTCCCTCCCTGACAGAGGAGAAGCGGACCCCCCAGGGCAGCCAGAACTCCCTCAACACAGTCAGCTCCGGCAGTGGCTCCACCAGTGGCATCGGCAGTGGGGGTGGTGGGGGCTCGGGTAGCACCGTGGTCAACACTGCCCTGCAGCCCTACGATGTGGAGATCCGCCGCGGGGAGAACGAGGGCTTCGGATTTGTGATTGTCTCTTCTGTGTCCCGACCCGAGTCTGGCACCACCTTTGCTGGAAATGCATGTGTGGCCATGCCCCACAAAATAGGTCGTATTATTGAGGGGAGCCCTGCGGACCGCTGTGGGAAGCTGAAGGTGGGAGACCGTATCCTGGCCGTCAACGGCTGCTCCATCACCAACAAGTCCCACTCGGACATCGTCAACCTGATCAAGGAGGCCGGGAACACGGTCACGCTAAGGATCATTCCCGGAGACGagTCCTCTAATGCATCACTGCTGACCAACGCTGAGAAGATCGCCACTATAACAACTACTCACACAGCCCAACAACAGGCTACACCTGAGCCCAGAAACAACACCAAACCAAAACAGGAGTCCTCTTTTGAGTTCAAATCCCCCCAggcccctcctccccctgccccAACAACACAACCTCCAGCCCAGGATGCTGGCTTCTACTCGGtggacctggagagagagaacaaaggttTTGGGTTCAGCCTGAGAGGAGGTCATGAGTACAACATGGACCTGTATGTGCTGAGATTAGCCGAGGATGGAGCAGCTGTACGCAATGGCAAGATGAAGgtgGGAGATGAGATCTTGGAGATAAACGGTGAGAGCACCAAGGGCATGAAGCACGCCCGCGCCATCGAACTGATTAAAAACGGCGGTCGCCGCGCCCGCCTAGTCCTCAAACGGGGCGACGGCTCGGTGCCTGAATATGACCCCAGCATCGACGGTGCCGGCCCAGCCGCAGGGGTACAAAACGCTTCGGAAGTGAGCACCCTGCCCTACAACAACGCACCATCGGACACGAACGCACCAGTCCCTCACAAACCATCACGGAGCAAGAACAAGAAGGGCCACCACCATTCCAAACACCGATCCCCGGAAAAGAAGAGCCAGGGAGGGGCGTCTGGGGAGACAAGGGCCTCCAAGCAGTCCAAGAAAAAAGTTGACAGGAGCCAGAGGTCTGGCGGGGATACCCACGGCACTCACCACCGAGGACACCACTCCCCGAATAAGGGCCGTAGCCGGGCCCGCAGTGCAGAGAACACCCTAGACAGTAGACACAGCCAAGAGCACCACAACACCCACCGCTCTCCCTACAGGTCCACTCACCGCAATCGGTCCCCCTATGGCCACCGGTCCCCCTACCGCTCCCCCCACCGCTCACACCACCACTCCCCCACCCGCTACCGCCGTACCCAATCCTCAGACCCCTACCGGCAGCCCTCCCtagacagacagcgacacagagagccagagaggccCAACGGGGAGAAGGCACCAGTGCTGAGGAAGCCTCCTGGCCCTGTGCCCAGCCCCTTCCTGGATGAGAGCCTCCTACAGGAGCCCCCAGCCCTGGACCAGCTCAACAGGGAGGTCACGCGACTGAGGGAGTCCAGAGAGGAGCACCTGTTTGGGGAGGACAGCCTTCTGCTGACGGCCTCCAACCTGGAGCGTGACTACAGAGGAGACAGCCTGTTATCTGCTGCTGCCCGTGGCCAGAGAGGGGAGATCCTTCCCAGGGTCCACACCCCTGAGTCAGACAGCGCCTACAAGAGGTACAGCTCACTGCTAAGGGGCCGCTCGcctgagagagtggagagagagccgCGCTCCCCAGACCCCCACCATAGAGCCCGTAGCCTGGGCCAAGACATTTCACCTGTCAGAAGCTTCAGAGaaccggaggaggaggaagaggcagcACCCAGACTGAAAGAGTATTACAGCACACTTAAGTCTAATGCCAGCCGTGCTTCCAAAGCTCTCCCGAAGCCCAAGCGGAAGGCCCATAAAGATGGCACCAAAGACCTGAGCATCTGATGGGTCATCTGCTGTAACACAACCAGCCTTCCCTCCAACCTCCCCACAGCAACACAGTTCCCCCTCACCACTCAGCTCTACTCTTCACACAGCAGAACACACCTGGACCTTGGATGAACCAAATGTATTGATTATATGACATTCCTGCTTTCCTACTAGACAGTGATTCCAAAACCTATCAACTTTTTCTGTTTGttggattttttggggggtcgTTAGTTGGTTAAGCATTGTATATTTATCAGAATTTTGCAGAAAATGTAAAACCGAAAAAAAACAATGATGTGCCTAACAGTTATTTTAATGAGTGTATTTTTCTTTTGTCTTTGTTTGATATGAGATGAGTGTTTTCTCAGCCGAAAGTGGTATGTACTTTTCCACTGAGCCCAAGGAGGTAGGCATTACACAGCCCCAGTGACTGGTGCCACTGACACAGATGCTGTGCATGTCTTTACGGTTTCAATgtcttctcttttctttctctcccccagtGCCACTGTTTTTAGACATTTGACCAGACTATAGCACAAGCCTGCATTTGTTTGTATATTTTTGGACAGTGTGCAGTATGTGTAAATTCAGAGGTGATCATTTTAAACAAATGAAGGGGAGGATAAAGTTgaactatgatgatgatgatgatgttaaaattaaaataatatatcaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU704363 lncRNA upstream 114621 50482264 ~ 50482571 (+) True G619112
TU704336 lncRNA upstream 154658 50442252 ~ 50442534 (+) True G619085
TU704231 lncRNA upstream 226382 50370565 ~ 50370810 (+) True G618989
TU704212 lncRNA upstream 240836 50355933 ~ 50356356 (+) True G618971
TU704209 lncRNA upstream 243615 50353326 ~ 50353577 (+) True G618968
TU704887 lncRNA downstream 46088 50844715 ~ 50844915 (+) True G619590
TU704894 lncRNA downstream 51507 50850134 ~ 50850383 (+) True G619597
TU704939 lncRNA downstream 157635 50956262 ~ 50956790 (+) True LOC110527969
TU705074 lncRNA downstream 198954 50997581 ~ 51037048 (+) False G619769
TU705078 lncRNA downstream 198954 50997581 ~ 51037048 (+) False G619769
XM_036983446.1 mRNA upstream 158526 50390541 ~ 50438666 (+) True LOC110527965
XM_036983447.1 mRNA upstream 159641 50390538 ~ 50437551 (+) False LOC110527965
XM_021609613.2 mRNA upstream 367541 50099564 ~ 50229651 (+) True LOC110527962
XM_036983443.1 mRNA upstream 976998 49571790 ~ 49620194 (+) False tafa4b
XM_021609619.2 mRNA downstream 81671 50880298 ~ 50957676 (+) False LOC110527969
XM_036983457.1 mRNA downstream 165465 50964092 ~ 51079129 (+) False LOC110527970
XM_036983459.1 mRNA downstream 210364 51008991 ~ 51079129 (+) False LOC110527970
XM_036983458.1 mRNA downstream 257788 51056415 ~ 51079129 (+) False LOC110527970
XM_021608244.2 mRNA downstream 294645 51093272 ~ 51097448 (+) False psd6
TU703948 other upstream 292960 50303430 ~ 50304232 (+) True G618712
TU703098 other upstream 977024 49572320 ~ 49620168 (+) False tafa4b
TU703100 other upstream 977024 49586870 ~ 49620168 (+) True tafa4b
TU702226 other upstream 1769965 48826827 ~ 48827227 (+) True G617133
TU700614 other upstream 2757470 47839388 ~ 47839722 (+) True G615624
TU705038 other downstream 161867 50960494 ~ 51074007 (+) True LOC110527970
TU707063 other downstream 1592721 52391348 ~ 52391633 (+) True G621650
TU707108 other downstream 1692541 52491168 ~ 52493240 (+) True G621695
TU708825 other downstream 2955279 53753906 ~ 53754119 (+) True G623180
TU710327 other downstream 4025010 54823637 ~ 54824199 (+) True G624628

Expression Profile