RNA id: TU704939


Basic Information

Item Value
RNA id TU704939
length 529
lncRNA type sense_over
GC content 0.46
exon number 1
gene id LOC110527969
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 50880298 ~ 50957676 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagagagagagaacccctgCCTTGGTGGGACATACTTGAATATTTTTGCTGAGAGAGAAAAGTGAATGACATGAAAGTTGTGATGCAGAACCTTAACATTTCATACTTATCCGTGGAAGTACAAGGTGTCACCTACCCAGAGGGAGTGTGTCAGGGGAATAGACAGTGGAGTGGCCCCGGGGGCTTTAAGGTCAGAGcagagacacagctagaggaggagagggaggaaaggctTGCAGGCTGATAGATCCAGAGAGATGTGCTTCAAAGCATCAGAAAGACTCACCTTTTGTTTGTTCTGGGTCTCTCAGGTGTTGTGACAGGGAATAGCCGTTATTCCTTAGTTTTGAGAAAGAGGCCGTATTCCCATGGCTATAACTACATGAATCAAGCAGAGTTTACCTCAGGCCTATAACAACACCAGTGCTCCATAGAGATTGGTTGATGTCTTAAAGGTGTAGGTGTCCAAATGCTGCCTCTAAGAACTGCTTACTGTACCTCCACTCAAACAACGTAGCTTTTTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU704894 lncRNA upstream 105879 50850134 ~ 50850383 (+) True G619597
TU704887 lncRNA upstream 111347 50844715 ~ 50844915 (+) True G619590
TU704469 lncRNA upstream 194524 50761277 ~ 50761738 (+) True G619198
TU704363 lncRNA upstream 473691 50482264 ~ 50482571 (+) True G619112
TU704336 lncRNA upstream 513728 50442252 ~ 50442534 (+) True G619085
TU705074 lncRNA downstream 40791 50997581 ~ 51037048 (+) False G619769
TU705078 lncRNA downstream 40791 50997581 ~ 51037048 (+) False G619769
TU705084 lncRNA downstream 51465 51008255 ~ 51008722 (+) True G619775
TU705072 lncRNA downstream 76962 51033752 ~ 51037048 (+) False G619769
TU705075 lncRNA downstream 79371 51036161 ~ 51037048 (+) True G619769
XM_036983450.1 mRNA upstream 157635 50597192 ~ 50798627 (+) False magi1b
XM_036983457.1 mRNA downstream 7302 50964092 ~ 51079129 (+) False LOC110527970
XM_036983459.1 mRNA downstream 52201 51008991 ~ 51079129 (+) False LOC110527970
XM_036983458.1 mRNA downstream 99625 51056415 ~ 51079129 (+) False LOC110527970
XM_021608244.2 mRNA downstream 136482 51093272 ~ 51097448 (+) False psd6
NM_001165054.2 mRNA downstream 136548 51093338 ~ 51097375 (+) True psd6
TU703948 other upstream 652030 50303430 ~ 50304232 (+) True G618712
TU703098 other upstream 1336094 49572320 ~ 49620168 (+) False tafa4b
TU703100 other upstream 1336094 49586870 ~ 49620168 (+) True tafa4b
TU702226 other upstream 2129035 48826827 ~ 48827227 (+) True G617133
TU700614 other upstream 3116540 47839388 ~ 47839722 (+) True G615624
TU705038 other downstream 3704 50960494 ~ 51074007 (+) True LOC110527970
TU707063 other downstream 1434558 52391348 ~ 52391633 (+) True G621650
TU707108 other downstream 1534378 52491168 ~ 52493240 (+) True G621695
TU708825 other downstream 2797116 53753906 ~ 53754119 (+) True G623180
TU710327 other downstream 3866847 54823637 ~ 54824199 (+) True G624628

Expression Profile