RNA id: XR_005052597.1


Basic Information

Item Value
RNA id XR_005052597.1
length 636
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC118965294
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 50937209 ~ 50939964 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGGAGGCCGGACGGGAGGATGGGGGGCATTCAGTCTCCTCCGGGCTGCGCCGGTTTCCAACCTCACAGAAAACTTCCCGCTCTTGAATTCCATTGCCACATGACGCTGAGCACTgaaacagaacagggcagaaGCTGCACACAACAGAAATACATCTGGAGGAAAATCCCAACATtggggagcaggtctcgaaccctcgaccttctagcccgaggtccggcgctcTATCGACTGTGCTGCAAAAGCATGCTccagcggcagagtcgatttccacgcttataaacccagggtcgttacaatactgTTAATCCTGATACTGTTTGTGCTTACATTTGAATTGGTTTTGTGCACCAACATTAATGGCAAACAGTGCATTTTCCTAAGGGAGCTTTTATGTTGTAAAGGCACATGAAGATCATTATTACACATGCCTTAATTGATTATAAAGTGTCTTAATTGATTATGTGTTTTTGAGTGAGTATTTGTGTGTGAGTTTGTCTATCTGTTAATGTgtatattattgtgtgtgtgtgtgtcgtgtgtgagtgagtttgtCTATCTGTTCATGTgtatattattgtgtgtgtgtgtgagtttgtctaTCTGTTAATGTgtatattattgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU704989 lncRNA downstream 43393 50887023 ~ 50893816 (-) True G619688
TU704899 lncRNA downstream 84416 50852492 ~ 50852793 (-) True G619602
TU704881 lncRNA downstream 97680 50839292 ~ 50839529 (-) True G619584
TU704759 lncRNA downstream 138612 50705082 ~ 50798597 (-) True G619478
TU704799 lncRNA downstream 183614 50753092 ~ 50753595 (-) True G619514
TU705033 lncRNA upstream 15500 50955464 ~ 50956197 (-) True G619732
TU705145 lncRNA upstream 57609 50997573 ~ 51037061 (-) False G619833
TU705147 lncRNA upstream 57609 50997573 ~ 51037061 (-) False G619833
TU705144 lncRNA upstream 93824 51033788 ~ 51037061 (-) False G619833
TU705143 lncRNA upstream 96166 51036130 ~ 51037061 (-) True G619833
LOC110528963 mRNA downstream 396624 50509473 ~ 50540585 (-) False LOC110528963
XM_021609616.2 mRNA downstream 630931 50300364 ~ 50306278 (-) False LOC110527964
XM_021609615.2 mRNA downstream 637072 50279611 ~ 50300137 (-) True LOC110527963
XM_021609612.2 mRNA downstream 1000634 49660022 ~ 49936575 (-) False LOC110527961
XR_005052596.1 mRNA downstream 1000647 49666452 ~ 49936562 (-) False LOC110527961
XR_005052598.1 mRNA upstream 147325 51087289 ~ 51091164 (-) False LOC118965295
XR_005052599.1 mRNA upstream 147325 51087289 ~ 51091164 (-) True LOC118965295
XM_021609626.2 mRNA upstream 157493 51097457 ~ 51112064 (-) False LOC110527971
XM_036983464.1 mRNA upstream 157493 51097457 ~ 51146059 (-) False LOC110527971
XM_021609623.2 mRNA upstream 157493 51097457 ~ 51152009 (-) False LOC110527971
TU704151 other downstream 631053 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 1000928 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 1639961 49295255 ~ 49297248 (-) True mustn1b
TU702811 other downstream 1741239 49195604 ~ 49195970 (-) True G617632
TU702803 other downstream 1751113 49184424 ~ 49186096 (-) True G617624
TU705034 other upstream 16307 50956271 ~ 50958540 (-) True G619733
TU708601 other upstream 2365572 53305536 ~ 53322831 (-) True G622985
TU711185 other upstream 4132515 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 4224528 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 4493492 55433456 ~ 55434072 (-) True LOC110528020

Expression Profile