RNA id: XM_036983457.1



Basic Information


Item Value
RNA id XM_036983457.1
length 4950
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC110527970
representative False

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 50960494 ~ 51079129 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCTCCTTCATTCATTAATGAAACAGGGTAACGGGATAGGACCGCGAGGGCTCTGTTTGGTTGAGGAACGTCGAGCGCCACCGTGGGGATTTGTTTACGAAAGTGCGTGGACACTCTCCAAGTGTCCCTTTTGCGTTATTGGTTCCAGTTTTCAGCCCACTGTCCTGGAACAAGACTGTCATGTTCACTCGCAGCTCCAAGAAGAGAGAATCCAGTAGATCGCTGAACACCCTTGATGAGCCGGAGAGAGGACAGCCGTGTAACGTGTGTGGAGACCAGTGTCCCGGCTTCACTCTGCACAAATGGAGGAAGATCTGTGTCCATTGTAAGTGCAGGCTTGAGGAGCATGTGATGACAGCTGTGCCTCTAGAGATGGAGAAGACCGTCACTAAGCTGATGTATGACTTCCAGAGGAACTCCACCTCAGACGACGACTCAGGCTGCGCGCTGGAGGAGTATGCCTGGGTGCCCCCGGGGCTCAAACCTGAACAGGTTCATCACTACTACAGCTCCCTGCCCGAGGACAAGGTTCCCTATGTGAACAGCCCAGGAGAGAAGCACCGCATCAAACAACTCCTCCATCAGCTGCCCCCACACGACAATGAGGTGCGTTACTGTAACACTTTGGACGATGAAGAGAAGAGGGAGCTCAAACTCTTCAGTAACCAACGGAAACGGGAGAATCTGGGCCGCGGCAATGTGAGACCATTTCCCGTGACGATGACGGGAGCGATCTGTGAGCAGtGTGGAGGGCAGATAAACGGAGGTGACATTGCAGTGTTTGCGTCGCGGGCGGGCCACGGCGTGTGTTGGCACCCTGGCTGCTTCGTGTGCAGCATGTGTGACGAGCTGCTGGTGGACCTCATCTACTTCTACCAGGAAGGGAAGATCTACTGTGGTCGGCACCACGCAGAGAGACTCAAACCACGCTGCTCTGCCTGCGACGAGATCATCTTTGCGGACGAGTGCACGGAGGCGGAGGGCAGGCACTGGCACATGAAGCACTTCTGCTGTTTCGAGTGTGAGACGGTGCTGGGCGGCCAGCGCTACATCATGAAGGAGGGCCGGCCCTACTGCTGCAGCTGTTTCGAGTCCCTCTACGCAGAGTACTGTGACTCCTGTGGGGAGCACATCGGCATTGACCAGGGCCAGATGACATATGATGGTCAGCACTGGCACGCCACAGAGGGCTGTTTCTGCTGTGCCCGCTGTAAGAGCTCCCTCTTAGGTCGCCCCTTCCTACCCAAACATGGACAGATCTTCTGCTCGCGCTCCTGCAGCCTGGGGGAGGAGCCTAACGGGTCAGACTCCTCAGACTCCGCCTTCCAGAGCGCACGCTCCACTCGAGAGTCCCGCCGCAGCTCCAAGGCTGGAAAGAATGGGGGCCAGGCGGGGAGGTGTTCGGGTGAGGTGGACCCTCTCTCCTTACAGATGGACCTGCTGAGTCTGTCCAGCCAGACACCCAGTTTGACCCGCGAGCCGCCCGCATGGAAGAGCCAGGGACAGGGGGGTGACACGTACCCCTACGAGGGCCGATCAGACCCCACAGCAACACCCACCCCACTCCATCTGCTCAGCCAATGCAACGTCAGGACTGCATATAACTCCACCTCCCCCGGGCAGGGCAACCAACCAAACCACAGGTCCAAGGAGACGGGTGTCACCAAGAGGCCGCCCATCTCAGCCCTGAAAGGCCGCTCTATGAATGAGAACTGGTTCCATCAGAGTTCAGAGGACTACTATCCCCCCAAACTGAAACCCCAGCAAAGCTTTGACGTACCCCACGGCTTGTCCTACCACAACGGCTTTTCTGACAAACGCTCGGTCAGTCTGCATGTGTTCCAGAGGGACAGGGAGGTGGGGCTTTCCCAGCGAGGGCGCAGCAGGAACCCCATCAGCGCACTTAGCTTCACGGAGCAGCTCACTCCCCTAGAGCAGACACCCAGGGGTTCCATGGAGTCACTGGCCCTGTCCAATGCTACAGGAACGTCAGCAGACGGAGGAGGGAAGCGCCAGGAGCACCTGTCTCGTTTCTCCATGCCAGACCTGAGCAAAGACTCTGGCATGAACGTGTCAGAGAAGagcaacatgggcaccctcaaCTCCTCGGTCCAGTTCCACAGCTCTGACTCCATGCACAGCCTCACCTCAGGCCAGCCCTACATGGAGCTGGAGCCCCCAGTGCAGGTGCAGTATCCTCTGCAGTACTGTGAGCCCCCAGGCCTGGGGATGGGCATGAGCCACCTGCCAGCCGGCTTCACCtaccaggaggaggacagagTCAGCCTGGTGAGCAGCGCCAACGCTGCCCGCCTCCCGCCCATCAGCGAGCGCACGCGGAGACGAGGAGAGGGCCCGGGCATGGCTGCCCCTGAAGACACCCCTCAGCGCCGGAGACACAATCACCACCGCTCCCGTCGCTCCAGACGCTCCCGCTCAGAGAACGCCCTGCACCTGGCCGCTGAGCGCAGGGAGAGGCCCCAGCTGAGAGTCAGAGAGGACTATGACCAGTTTCCCCCTCCGCGGGGCGCTAGGGACACATTTGGGAGTGCAGGGGGGAGGTGCAGGGGGCCGGAGCCATTCAGGCAGTGCCCTCGCACCACCTCTGACCTCACCCTGCAGAAGCCCAGTGCCCACCGCCGTCTCGCCGGGCCCTACTCCTGGGACGACTACGAGGATGAGGACGAGTGGTGCTCCACCTGCTCTTCATCGTCTGAGTCGGAGGACGAGGGTTACTTCCTGGGAGAGCCCATTCCTAGGCCCGTGCAGCTGAGGTACCTGAGCAGCCAGGAGCTCCTCCACAAGTACAGCTCCACGGGGGTGGGCGGACCGCACCAAATGAGCGGCAGAGGGGGACAGCTGCACACCCGCAAACGCCGGAAAAGCAAGAACTGCATAATCTCTTAAAATTCGCACCATGGAAAGAGTCGAGAGAAAGTGCCCTCCCTCCCCCAGTATAAACTAACATAGTTCATCTATTCAGAAAAGAGAAACAGACTTCTGAAGTTGTTGAGTATTGTGAGGTTGACAGTGTTTTGATATGCAGTTGGGTAAACGGTTAACAGCACAAATGTTTTGCATGTTTATCCATTTAATGTTTTAAAACAAGTTATCCTGATTACTGATTATATTTCTCTGACTCTCACACTGCACTCTGCTTGTCTGTCACCATATTTATCAAAGCCAACGTGCAatcgtaataataataatgtcattTCCATGCAGCAACAGTAAGGTACAGACAATTCAGTAAGGTCCAGCTTTTTCATGCAATGTGATTTAGGTATATACCAGTGTACTCAAGTTTATAGGCTGTACTGTATATAagtaaatgaatgaataaattcACTAAATTAAGGAAGCAATGTAAATACTATGTAAATGAGGTCCCacatatttttatattttgtatGGATAGAATCATTTATGTATTGAATATCTATAATGTAGGAATAGAAAATGCATGCCCGTAATTTGTTGATGTGGTCCTGCATTGGAATAAAATAGTATTtcagacagagagtgacaggtGTCCGTTTCCCTCACTAGAGACTGGTGTGTTCGTGTGATCATTTGTCTGACAGTGAACAGTCACCCTCTCCATCTGCTCAACACATAAATGAATGAAAACGTGGCGAAAGCGCTGATTAAAAAGTCACCCCTCAGTAAATGTCATTCCCCCATGAGGTCATGAAGTGATATAAATACTGTGACTATTGGGCCTTTGTGGCATTGTTTGCAAACAGATGCCTGTGAGCTGTAACTGAACTAATCATATAAACCCAGATAATGTGCTGCTGATGCATCTCTATGGATTAACGCGTGAATAACTATGGATGGGATTCAAATGGGCTTTACTGAAGTACAATTTGTAATTCACAAGCTATCTCCTCAATGAACACAGCCTTTACATCCAAAACAACAGGAGTAGTTTACTTCTCTCATCGTTTTTAATTCTCTACATTTACACTTAAATGAGCTCCAGGTCAAGATTGTGTCTGAAAGGTGAAGTGACAGGGTTCTAAATTGGCTCGTGTCTGATGTCCATGTGGTCAGAGGATTACAGTAGCTAAGACTCTGGCCCCCGTAAACTGggtccaccccctccctcctactGCAGGTCTCAAAACCAGGTATTTAACTACACACACTAGATTAAAAGTGAGTGAAGACCAATCCCaatgggcacagatgtcaattcaacatctagttttgatttacatttggttgtcaactaatgtgaaatcATCGAAACAATCACAtcattggatttaggtaaaaTGTGGGTGACAAAAACACAAAATTCCCTTACGCAgattactttttgcaaattcAATTCAttttccacattggttcaacgtcgTCATATTGATTTTGGGggtttgaaatgatgtggaaacaaagTCGATTCAATACGTTTTTGCCCAGGGGGATGCTACTGACATGTTGGGTGAATTAGTGTGTTTATGTGGGTTCCTTTAGATAGCATGTCTTCCAGTGTTCATATATACTTTGCGGTGGTCAGGAGTTTTCATTTTGTTGACTGTTATGACCAAAACAGCTGCACAAACGTGAGACGCATTACTGTCCTGACAACTGAGCGATTCTGTATTTTTTTTGCCTTTTTTTACTGGCCCCCTAGGCCACTGGTGTCATGCCCAgatttgtcttgtttttttgtatttctcaGTTATCAAATGAATTACTAAACTTAATTTTTAAGCCCACGTTATATCATCATTGCTTGTAAAAAGATTTGTCAGCTGTATTTTACAGAGGGGGTCACACTGACTGGACTAggtgcaggaggaggagagagtagagtgacGCACACAcagcgtttgatttgatttgagctgccGGTGATGGGTAGGAGGTTTGTTTGTAAATGAATGTGATCAAGCTATGTAGCCAATTGATTCCTTCTTGATGAATAAATATatcacaaatg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU704939 lncRNA upstream 7302 50956262 ~ 50956790 (+) True LOC110527969
TU704894 lncRNA upstream 113709 50850134 ~ 50850383 (+) True G619597
TU704887 lncRNA upstream 119177 50844715 ~ 50844915 (+) True G619590
TU704469 lncRNA upstream 202354 50761277 ~ 50761738 (+) True G619198
TU704363 lncRNA upstream 481521 50482264 ~ 50482571 (+) True G619112
TU705207 lncRNA downstream 8890 51088019 ~ 51088431 (+) True G619890
TU705287 lncRNA downstream 110693 51189822 ~ 51191983 (+) True G619953
TU705315 lncRNA downstream 171058 51250187 ~ 51251536 (+) True G619981
TU705592 lncRNA downstream 355152 51434281 ~ 51435206 (+) True G620230
TU705618 lncRNA downstream 367212 51446341 ~ 51446574 (+) True G620252
XM_021609619.2 mRNA upstream 6416 50880298 ~ 50957676 (+) False LOC110527969
XM_036983450.1 mRNA upstream 165465 50597192 ~ 50798627 (+) False magi1b
XM_021608244.2 mRNA downstream 14143 51093272 ~ 51097448 (+) False psd6
NM_001165054.2 mRNA downstream 14209 51093338 ~ 51097375 (+) True psd6
XM_021609628.2 mRNA downstream 72921 51152050 ~ 51158063 (+) False thoc7
XM_021609627.2 mRNA downstream 72954 51152083 ~ 51158063 (+) False thoc7
XM_036983468.1 mRNA downstream 73111 51152240 ~ 51158063 (+) True thoc7
TU703948 other upstream 659860 50303430 ~ 50304232 (+) True G618712
TU703098 other upstream 1343924 49572320 ~ 49620168 (+) False tafa4b
TU703100 other upstream 1343924 49586870 ~ 49620168 (+) True tafa4b
TU702226 other upstream 2136865 48826827 ~ 48827227 (+) True G617133
TU700614 other upstream 3124370 47839388 ~ 47839722 (+) True G615624
TU707063 other downstream 1312219 52391348 ~ 52391633 (+) True G621650
TU707108 other downstream 1412039 52491168 ~ 52493240 (+) True G621695
TU708825 other downstream 2674777 53753906 ~ 53754119 (+) True G623180
TU710327 other downstream 3744508 54823637 ~ 54824199 (+) True G624628
TU710684 other downstream 3968167 55047296 ~ 55052688 (+) False G624962

Expression Profile