RNA id: XR_005052598.1


Basic Information

Item Value
RNA id XR_005052598.1
length 1740
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC118965295
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 51087289 ~ 51091164 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtatctttaaaatggtgcctaatacttgtatgcttgaaatttgatttatgagatttctgttgatttgtatttggcgccctgttatttcattggctgttggctaGCGGAACCCCAGTCTTAGACAGGTTAAGACATTTACAAAACACATTTATAGCTATAACTTAATTAATTGCTGTATAAAAGGGTCGTAACAATGCAATAGAGAGGTACAAATTAGACAAAAAACGGAATACCATGACTCAACTAAACAGGTTGTGCAGGCCTATAACTGCAATTGTAAAATGTTTAGTCTGTTTATGTTCTGTCTTCCAGACCCGTGGTAATGCTCTAGTCTCCTTAATCATTTAGCATATTCACTTGTGCTCAAATTAACACCTAACCTACTTCACCAGGCGTGTAGACATACTACTGGTGAAATGTCTGTCTCCTTAACCATGTCTGTCTGCTTGCAGTACATCcagagtgccttgctcaagagcacatcggcagatttttcacctacttggctctgggatttgaacaagcaacattttggttactgtcccaacactcttaaccgcttgGCTACCTGCCGTAGCCGTACCTGATAGATCAGTTTCTGTATGGATTCACTGCAGGTAGGCCTATGTGATATTGCACCTTCAATTTCATGCAGATCAGTTTAATTGAAGGATCATTATGCCATGGTAAAATAGAATCCCAGAATGACCTTGTGTTTTACAGCGATAATAACAATATATGTTTTAGTCTTGTTTGTGAACATCAGGTTTAGGAGGAAATATCCATGCAATATACCTGGGTGAGAGTTCACCCTAAAAGATAACGGCATGGTAACACTAACGTCAGCTACCTTTGACTCCATTGGTAAACTGTCAGGACAATTTGTTGGACTAAGGTAAGGTGCTATTTTTGAATTTCAACATTTCACTGAAAAAAATAAGCATCAAGCATCACACTAAACATGTAGTTATCAATTTGTGCCAAATCGGATATCCTGAATATGCTCTGACTTGAGGCTTTGTCTCAACTTTCTCAGAGAGATTCTTGGCTGTGAAAATAGCTGGAACATCCTACTGTGTGTTCCAACATGTTTCTCTGTGGTACAGCtgctgacaaaggcccttctttCCAGAAGACCCAAGATACTCATTGATAGAAAAGGGCAATGCAGAGGCATGCAAAAAAACTCTGCAGAGTCTGTGGGGTAGGGGTGAGGACAAgctggagatggaggagatggtgtTGGAGTACGCTGCCATAAAGGGTGAGGCCTCTAAGAGTCTACTGGAGCTGCTGAGAGACAGAAGCTTCCGATGGCAGCTCATCACCACGGTGGTGGTGTACAGCCGCATCCAGTTCTCTGGCATCATTGCAGAGCTGCTCAAGTCGTTCAGCTTCGTGCTGTTCACCTGCATGTGTCTGTTGGCGTCACTCTGTCTTCTTCTACCTACTGGAGACCAAGGGGAAAACCCTCCTGGAGATCTCAGGGAGTTTAAAAACATCACTCTCTGTGTAAAACCCCTCTCACATGACAAGACCCTGGAGACAAAGTTAGAAAAACTGTTGGAAGCAAAAGAACTGAGATGCATTATACTCAGTCTGAGTTGTTTAGTTTGTATTTTAGTATATATTTATACActgtgcattcacagccatataccATATTCAATAAAAACATGTAAAAGTGTTATATCTGAATGAGTTTTATGGACCGATTGAATATAATAAAATGCTTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU705191 lncRNA downstream 8200 51077886 ~ 51079089 (-) True G619876
TU705145 lncRNA downstream 50228 50997573 ~ 51037061 (-) False G619833
TU705147 lncRNA downstream 50228 50997573 ~ 51037061 (-) False G619833
TU705144 lncRNA downstream 50228 51033788 ~ 51037061 (-) False G619833
TU705143 lncRNA downstream 50228 51036130 ~ 51037061 (-) True G619833
TU705491 lncRNA upstream 159192 51250356 ~ 51250574 (-) True G620130
TU705601 lncRNA upstream 340282 51431446 ~ 51432983 (-) True G620236
TU705603 lncRNA upstream 342178 51433342 ~ 51433733 (-) True G620237
TU705880 lncRNA upstream 421046 51512210 ~ 51512411 (-) True G620500
TU705883 lncRNA upstream 422957 51514121 ~ 51515552 (-) True G620503
XR_005052597.1 mRNA downstream 147325 50937209 ~ 50939964 (-) True LOC118965294
LOC110528963 mRNA downstream 546704 50509473 ~ 50540585 (-) False LOC110528963
XM_021609616.2 mRNA downstream 781011 50300364 ~ 50306278 (-) False LOC110527964
XM_021609615.2 mRNA downstream 787152 50279611 ~ 50300137 (-) True LOC110527963
XM_021609612.2 mRNA downstream 1150714 49660022 ~ 49936575 (-) False LOC110527961
XM_021609626.2 mRNA upstream 6293 51097457 ~ 51112064 (-) False LOC110527971
XM_036983464.1 mRNA upstream 6293 51097457 ~ 51146059 (-) False LOC110527971
XM_021609623.2 mRNA upstream 6293 51097457 ~ 51152009 (-) False LOC110527971
XM_021609625.2 mRNA upstream 6293 51097457 ~ 51152009 (-) False LOC110527971
XM_036983460.1 mRNA upstream 6293 51097457 ~ 51152009 (-) False LOC110527971
TU705034 other downstream 128749 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 781133 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 1151008 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 1790041 49295255 ~ 49297248 (-) True mustn1b
TU702811 other downstream 1891319 49195604 ~ 49195970 (-) True G617632
TU708601 other upstream 2214372 53305536 ~ 53322831 (-) True G622985
TU711185 other upstream 3981315 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 4073328 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 4342292 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 5600159 56691323 ~ 56696091 (-) True G627254

Expression Profile