RNA id: XM_021609623.2


Basic Information

Item Value
RNA id XM_021609623.2
length 8492
RNA type mRNA
GC content 0.48
exon number 15
gene id LOC110527971
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 51097457 ~ 51152020 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGGAAGCACCTGGTAAAGACCTCCACAGTCAGTGAGCATTGCATTCGTTCTTTTTTTCACGATCTTCTTACTTTAATATCTGCCACattcaacagattttcacctatCTGCCATCATATTTGCACCTCCAACGTCCAGGACCCTTGTAAGTGCAAATACATAATGTTCCTATTAAGGCTGTTAATTACTTATGCTGTGCTTTTGCCAGCTTCATTGGAAGACATGGctggccagctagctagctagcaagcttacTTGGGCTAGCGCTAATGTTAGACGCTCTTCGATTGATTGCAAAATTAGCTACATTTTGGTGAGATGGGCATCTTTTACAGCTAATTTCACAGTCAGATGATATATTTTGTGTTTGAATCTGTAGTTATGTCATGAGTTATGTCATGTTATTCACTTGGTTTTAAGTGATGCAATCTGGAATCCAACATTCccagagctaacgttagctaggcaaCTGTCAATTTGCCCATGGTGTCAGTCTGAGATGCAAGTACAGTCCCTAACTAATATAATACTAGTATCTAATATACTAATACCAGAACCAGTATCTGGGCAGAGGAGACGATGCATATGACGAGTTCATCATCTCCTCTGCCCAGATATTGGTTCAACTAATACCTAGCTACCATATAGCTATGTTGTTTAGCTAACTAGTTAACTTCACATAGACATAAGGTGAACGTGTTTAACTTCTGTTTCTGGCAAGCTGTTGGCTACTTGGCCAACTAGTTTTTTTGTGCCTTATTTTAGCAGCTAACTTTAATTAATTGGTGCAAATGTAGGGTAATTCGACAAATTGTTGAACTTGTGAACATAATCGTTGAGGGATGTGCACTTCACAGTACAATGTCAATGCCACCATCAGCTGTCAGATGACAAGTGTCATTTTTTCTTTTTTCCCCTCGATGAGCCACTATTAAACATGAATGGTCAGAGTCGCTCCcttcctcaagaaaccaacactcgaccCCTCTGACATCAAACTACAGACCgatctatctgcTGCCTTCGACAccatgaaccatcagatcctcctctccaccttctcAGAGCTGGGCGTCTCATATTGGCAGGTCGCACCTACtaggtgacgtggagaggattTATGTCTGCACCAGGTCCTCTCACACCAGGGCTCGGTTTTAGGTCCTTTCCTCTTTTCTCTATccaccaagtcactcggctcctTCATATCTTCACAAATGATATCTCTCCgatcactgctatgcagatgacactcaaCTTATTTTCTCCTTAcgcccttctgacacccaggtggcaacACAAATCTCTACGTGCCTGTCAGACATCTCAGTTTGGATGTTGGCCcgccacctcaagctcaacctcaacaagacggagctgctcttcctccaggGGAAGGTCTTcccgctccaagacctctccatcacagttgacaactccacggtgtccccctcccagagcGCCAAGAACCTTGGCGCGACCCTAGAAAACACCTgatcgttctctgcaaacatcaaagtaGTGACTCGCTCATGTAGGTTCATGTTACAACATCCATAGAGTATGAActttcctcacacaggaagcatTGTAGGTCCTTATCCAGACACTTGTCATCtaccgtctggactactgcaactctttgttggctgggctccccgcttgtgccatcaaatcgttgcaacttatccagaatgccGCAGCACGCCTGGTATTCAACATTCCCAAGTTGTCCCATCTCACCCCACTCCTCCGCCcattccactggcttccagtcgaagcacGGATCTACTTCTAGACCTGGtgcttgcctacggagcagcaagATTCCTTCCACAACTTGTGTGGAGCGACCAGAGATCACCCAAACCGATGAGGTTTTACTGATCCAGTTAAGATTGtgttcccttttccacatttgaCAAGCGGAAAGAATGTCGGAAAGGGCCGATGATGACGTCAGGGGGGAGCAGCGCAGAGTGGCCAGGCAGCtgaagcagcaacagcagcagatcCAGCGGGGAGAAGGCTCCACAGCAATGGCGACTGGTGCGGAGCGCAGATCCATGCCTAGTCCAGAAATAATGTTGGGACAGCCTTGGAGCAGCTGGGTCGATGCTGCCAAACTCCACGGCAACGACGGTGCCGAATCAGAGGAAAGTTTGAAAGAGTTCGGGAAAAATCGAGAAGCCATGCGACTGTGCAGAGATGACATGCCCATATTTGGCCAGTGTCCAGCACAGGATGACTTCTACCTGGTGATGTGCAGCCACTGCAGTCAGGTGGTGAAGCCCCAGGCCTTCCAAGCACACTAcgAGAGAAGACACAGCTCGTCCAGTAAGCCCACCTCCACCTTAGCCCCCTCCACAGCTCTGTCTCGGAGCAGTGGGCCGGTTGGTGGGGGTGTCAGTGGGGGGGCCATGGGCCGCTCTTCCAGTGGGACCAGCACCTCGTCCAACTCCAAAATCCTCAAACCAGCCAAAGAGAAGCTACCAGGCATCCAGCAGAGACCTCACTTCCCTCCCTTCAGGATGCTCAACGACAAGGTccTGACCCCTGCGGTCAAAGTGGAGAAGATGCGTCTGAAGGTGGATTCGTCAGCCAAGCTGGTGCAGGTTCCCTCGGCCCACTTATCGTCCTCTTCCTCCAGCAGCACTGTGAGCTCCTCGTCACCCCTGAAGCCAGGCCTTAACTGTCCCTCCATACCAAAGGCTCCCCTGCTTGCCCCCGGCCAGATCCCCAACGGCAAGGGCCACGTCTCCCTGGAAAAGAAGCAGGACAACAGCACTAGTAGCAGACAACACCTCTACAAGAGACTGTCAGAACGTGAGTTTAATCCAGATATCCACTGTGGGGTCCTGGATATGACAGCTCGGAAGCCATGCACACGATCCCTAACATGCAAGACACATTCCCTAAGCCAGCGGAGGGCAGTGCTGGGCCGGAGGAAACGCTTCGACACACTGTTGGCAGAGCACAAAAGCAAAGCCCGGGAACGGGAACTGCAGCACCCCCACCCCCTGCAGACCACCCCTCTCAGGGaaccccatccctccccctcacGGCTCGCCCCCCACCACGACGCCCACCAGGTCGCTCATGGCAACGGAGCCACCGACGCCACCAAGCCTTTGGCGTTTGGCAAGCCCAAACCTCACAATCTTGGTCTTCCACGGCTGAACAGCATTATCTCTGATGGAGGTGGGGGTACCCCGGGAGACCCCCACCACGCTACGTCCGCTCCTGACGggggctcccgcctgtccagtgacGAGGGGGAGAACGATGAGCGGGAGGAGTGCACAGACAAACTGGACTGTCACTATTCAGGTTACCACCCACGGCCGGCAGCTtTTTGTACCTTTGGAAGTCAACTGTTTGGGAGAAGCTGCTACTCGTTTGACCGGCGCTGGGATCGAATGCGATGTGCTCTTACCGCCATGATGGACAAGCACGTCAACACTCAGATGTGGAAAAAAATCCCTTTCGCCTTGGAgaactcctcctcttcttcttcctctgcgCCGGCCCACAGGACAACCACAAACTCCTTGTCCTCATCACACGGTAGCGCCCCTGCTTCGGGCTTCCTCAGCCCCTCCTCTGCGCCCCTTCCACCCCCCTACACTCAGTCCTACGACAGCAAGTCTGTGCTCTCGTACGGGACCACCTTAAACGCCCGTGCCTCCCCCCAGGGCGCGGCCGACCACCCTGCCTACAGCGCAGCACAGGCCAGACAAGTGTCTTCGTCGCCCCAGATGCCTTCAGCCCACTCCTCGGTCCCCTCCCTGTCCTCAGGACGACCGCTCAAGTCCAGATCCAGTGGCAAGTCCTTCAGACCCCGGGAGTCCTCCTCCACAGCTGCCATAACCAACTCCACCAGTGGGGGCAGCAGTGgaggaagcagcagcagcagcctcagctcggggaagaagaggaagaacagCTCCCTCCCTACATCGTCTCACGCTACCACCTACTCCTCagagtcctcttcctcctcaaacACCACCTCTTCCTCCTTCAAGAAGAACTGCACAGTTCACAGTGGCAGCTCAGGGAGCACGTACCACCATGCCTCgctagtctcctcctcctcctcgtctcacAGTGGCGTCCACAGTGTGGGACTCAACTGTGGCCCCAACGCCCGGACCAACTCCCTCAGTCTGAAGGCAGAGCCGTCGGGGCCAGCGGGGTTGTCGGGGTCCGGGGTCAGAGGCCCCCCCTCGGGCAGCCCGGCCGAGTCCATCAAGAGGATGAGTGTAGTGATGAACAGCAGTGACTCCACCCTCTCCCTGGGGCCCTTTGTCCACCAGGCCCCAGAGCACCACAGCAGCTTCAGCCATGCCCACAATGACGGCCGCCTAGAGGGGAAGAAACGCAAGGGCTCCCCCGCTGTCAGCTCCATCAACAGTGGAGGAGGTGGTAGTTTAGGGGGCGGTGGCGGGGGGCCGGGCAGGCCCAAAGTGGCCAAGTCTCCAGCCATCAACAACATCCACAGCAAACATGGACGCACAATCCCAGGAGCCACGGGGCTCACCAACAACTCCCTCATCCATCAGccaaaGGCCCGCCCCTGACAGCGATGGCTGGGTTCTCTGTATGGAACCGAGGGGCGGATGAAGAGGAGGCAATCTGTGCGCTGCTCTGGACTGCACAAGGCCTTCTAATACGTTACTCTCAGCTTCCCAAGATCCTCAGGGTGGAGATGATCTGGACAGCCCAGTGACGTCACTGTTATCGTCTATAGTGTAACTATTCCTCCCAAAGCCATGTAGGAGCGCCGTGTGGAGGTGGCAGGCGTTAACACCCGGAGTGGGTCACACTTGGCCCCCTGTCAGTCAGGGTACAGAGGTAGATCTTCCTATGGGGAAGACAGGCTCCtactccctccttttctctcctgtcTGCCCTTTGACCTATTGTTGAAATTCCAGAGGTACGGAGGAAGGGAAAAGTGCTGGCACAACAGCCATGGCACTGCCCACCAACCATCATGACGCAGAGCCACTGGGATTGACTGGAGAGCTCTCAAGCCGCAATCTGTTGGTTTCCGAtgagctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagactagaTTCTACTGGAAATTCAAATGTACACCTCCACGCCTGAACTCAGAAGCCTTGGAAGGAGAGGGCAGGATAAGGAAAAACTGTCAGTTGCAACACTTCGAACACAATcacattgttgtttttttaatgctTCCACTACATTTTGTCGGTTGGTTTTAATCAGTGTGACGTGTACATAACGTCAGGTTATGTATAGTAGCCAGAGATGAACCACATGAGGAGCAGATTCAGTCAATTCTATATGAGTTCCATACATGACCCAAACAATTATGCAAGTGTTACTTTTTTATGtttcttatgtttttcactgaattTAACTACAAAAATCTGTGTGGAGAAGAAAGTAAATTGTGCATGCATATGTGAAAAAAGGATGCCTGATACGACAATTTGATTGAACGGTTGTGAAAGAGGCTTGTCTTGAGGACAAGTGTTAATTCCTACAATATTTTTATCTTACAAATGAACAGCTACAGTAGACCTAGCCCTAACTGTGAACAGCACTAAACAAACACAGACCCACTACTTGCTTTAGGACATTTTAAGTCGGGTTTATTTTCCCCAAAAGCTAGCCAAAGGCAGCCATCCATTTCACCCACCCTAGTCTGTAACCACTACGCCAGCTTTGGCTATTGGCTATTAGGATTTCCATTCCGGTACCTTCAGTTATGTCACAATACAGTTGTCCATCACACTTGTCCTTCGTCAAAGCACGGAATCTTAAACTGGCAATACTTCCCCGTCTGTCTCTGAGATGAGATGATGCTCCATTGCCCCATCTGTCTCTGAGTTGATGCTCCTTGATAtcgtgttttttttgggggggggggtgagattcATGGAGATGGCTTCAGAGTAGGTTACTACTTTTTGTAACTCCTGTAAATTTCGTAAACTCCACTGATGTCAGGCAGCGAGCTTAGCTGAGGAGCCGACTATTTTCTATCTTACTTTCGCTTTTTCTTGTATGAATTGAACAAATATCGAAGTATCCCTATTTCAGAATACATATTTTATTAACGAATTGTACATattgaaatatgtatttttgCACAGGCATTTTCTTACACAATTTTTTGGGGTACAATTGAGatcattattatttattaaatGAAAGAACAAGTTTAAGAACTTAACTTATTTGAAGTGGTTCACTGCCAAGTCTATAATGCAATAGGCCTATAACTAGAGGTTGAAGCATCTCATGAATCATGTACTGGGATCCTttaaaacaggggtgtcaaactcaatatTGCCCCAAGGGCCGCACTCAACGAGGTGAATGTAGGTGtattatcatttctacacagtttcgATTTGGTTTTAGTCCTTAAAACAGTGTTCCCCAAATTCGGCCCGGGGGTagttttattttcattgttggacataaaagataGTAAAaccaccaggaaatcagctccaagggattttaattttggaaatatgCTCCGAAGTATTCCCATACTTAGAGACACCTGATCCTATACAAATATAAGCATGGTTTGAAagtattatgttttagtcaaacatgaTATGTTTGGACTTCTTGCGGTCAATTAGTAATATATAAATGAttatttttatgtaattatgttccggtccCCTGACCAGCCGCTCAAGAAAAAATCggcccacggctgaatctagtcAATGATCCTTTGTTTTAAAGTATATtgagtttgttttgttttactcaAATCACCCACAGGGTGGATTGGACCCCCCTcaatgtttgacacccctgctttaaaAGGTAGTGTTGCCACGagcatgtgtttgtgtgacagACAATACTTTGTTTTTAACTCTCCAAGGTCTCACCTGtgctttttactattttcaataGTTGCCTCTGAATCAACAAAGAAATGATCATTTTATTTGACCCAAATAGCCTGTGATTCTGAAATGTCCCGCAGGCTGAAAGCTGTGCCCGTTGTCTAAGCGATTTCCATAGATTCAATCATTTACCTTTTTAGACGAAGACCTTGTAACATTTCATCATTTGAAACACTTTCCCTTAAAGCTGAAGGGACTTAAGCAATCATTAAAGCAAGGAAGATGAACCCTTCAAACAGTGAAACTGCTTGCATCATTGTTGCCAAACATAATTTGAAGCGCAGCGTTTTAAGGAAATTCTTAGTTTTCAGCTTTCAGAAATGCTGAAATAAGAAAGTGCCTGCATTTGTTTCACACTGACTGTTTAAGGACAGAACTTTTTTCATTTTAGTTTTACCTTACTTGAATGTTCAAAGTGTTTTAGGAGCTTGCTTTTAAAATATGCCTATGAACCCTAAATGTGGTAAAAACCTGATTAGCTTGTCAGCTAGCTGGTATGAAGTACGtcgggctctattcaatccgtatcgcagaAGTTCAGTTATatcgtgattgaaatttaaaaaCAATGTTCCCACATTAGCGGTAAACTCTGCATGTTTGCCTAgctacccaaactccttgctccAGGTAACTGCTATGCCACACCCACAGATGTTTTGTTTCTTCTCCGCAATgatctggatctgagtacctccctgACCATTTCTAGAATGTAAACAAAAAACTAAACGTGCACCCCTTTGTGTTCTGAGGATGGGAAACGCTGTTCTAACCGTTCTGGTCCAGAGCCAGAAGACATGGGTAATGCAATGTTTGGAAATTCaacattggctttgatactctaaTTGGgtagagatgatccaatcgctTTGATACTCTAATTGGgtagagatgatccaatcgctgaGGACTTTTTGTACAACACCAAATGACTTCAGTGATGGTAGTCTCAAACTGAAGTATGTAGCGAATGAAATaattcagtttgagtcgtcagTCAATGCATGTCAGCTCAATCGGAGATGACCTAACAGTAACGCTTCAGCGATCCACATTGAATAGAGCCCGTAgtgttaacttttttttttatcaacgtTTTCCAGTTGAGACGTCTGAGATCTTGGTGCAGACCAGGGGGTATTGAAGCTCCCTGGTCAGTTATGAATTGTTTAACAGGTTCAGTAAAGTGTTTTTGTTTACCCTCAACCCCACTCACAACGCTGACCTTGTTTCCATATGATGGAAACTTTGCAAAGCTGTTTTTATCAAGTACCACAGCCTTGGAATGTGAAAGTGAGAGAACACAGCTTGCGGGAGGAACATATTTTCAGTAGATAACTCCTATGTAAGAGCGTGTATAGTATTTTGTTTTAGAACATCAGAATCATTTGATCAGCTGGACTTGTATTGGCTGCTATGTAATTCATGAACAAACATGGTAGGTTAGATTTACTTAATATTTAAGATTGTATAGTCTTTGTTTTGTAACATGTttctgtaaataaataatttatacagctatttatacagaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU705191 lncRNA downstream 18368 51077886 ~ 51079089 (-) True G619876
TU705145 lncRNA downstream 60396 50997573 ~ 51037061 (-) False G619833
TU705491 lncRNA upstream 98347 51250356 ~ 51250574 (-) True G620130
TU705601 lncRNA upstream 279437 51431446 ~ 51432983 (-) True G620236
TU705603 lncRNA upstream 281333 51433342 ~ 51433733 (-) True G620237
TU705880 lncRNA upstream 360201 51512210 ~ 51512411 (-) True G620500
TU705883 lncRNA upstream 362112 51514121 ~ 51515552 (-) True G620503
XR_005052598.1 mRNA downstream 6293 51087289 ~ 51091164 (-) False LOC118965295
XR_005052599.1 mRNA downstream 6293 51087289 ~ 51091164 (-) True LOC118965295
XR_005052597.1 mRNA downstream 157493 50937209 ~ 50939964 (-) True LOC118965294
LOC110528963 mRNA downstream 556872 50509473 ~ 50540585 (-) False LOC110528963
XM_021609616.2 mRNA downstream 791179 50300364 ~ 50306278 (-) False LOC110527964
XM_021609629.2 mRNA upstream 27194 51179203 ~ 51207199 (-) False LOC110527973
XM_036983469.1 mRNA upstream 27194 51179203 ~ 51207209 (-) True LOC110527973
XM_036983482.1 mRNA upstream 297022 51449031 ~ 51726478 (-) False ptprga
XR_005052729.1 mRNA upstream 1301830 52453839 ~ 52453893 (-) True LOC118965403
NM_001124638.1 mRNA upstream 1431780 52583789 ~ 52658755 (-) True camk1b
TU705034 other downstream 138917 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 791301 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 1161176 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 1800209 49295255 ~ 49297248 (-) True mustn1b
TU702811 other downstream 1901487 49195604 ~ 49195970 (-) True G617632
TU708601 other upstream 2153527 53305536 ~ 53322831 (-) True G622985
TU711185 other upstream 3920470 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 4012483 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 4281447 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 5539314 56691323 ~ 56696091 (-) True G627254

Expression Profile