RNA id: XM_021609628.2



Basic Information


Item Value
RNA id XM_021609628.2
length 884
RNA type mRNA
GC content 0.42
exon number 8
gene id thoc7
representative False

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 51152050 ~ 51158063 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CACCAGCACGCACGTCGCTGCGCTGCCAGCACGCGGTTTCAAAGATCTGAAACTGGTGCCATTTTGTGTCTCGTCAAAGGGGCCAAGTAACAATTTTCAGCAAAATAAATGCACCGTAATGGTGAACGAAGAGGGCAGTTTCATACGAAGTTATTCGAAAACGTCTTCTCATTGATGGAGACGGAGCTGGAGACGACAGACGTATCAATGTTCTGTTGAAGAGCTTCACCAAATGGTGCAATTCAACTGGGTCTCCTGAAGAAGGATTCACACAGTACCAGAGGATGTTGGGTACATTGGCACAATGTGAATTCTCAATGGGGAAGACCTTGTTGGTGTATGACATGAACCTCCGGGAAATGGAAAACTATGAGAAAATATACACTGACATTGAACAAAACATCACATCAGCACATGATAAAATATCAGAATGCAAAAAGGAGATCCAGAGGGCAAAGAGAATACGAAAGAATCGTCAAGAGTATGATGCACTGGCAAAGGTCATCCAGCAACATCCAGATCGCCATGAAACACTGAAGCAGTTGGAGGCACTTGACAAAGAGCTCCAGCAGTTGTCTCACATCAAAGAGAATGTGGAAGATAAGCTGGAGTTGAGGAAGAAACAGTTCCATGTGCTCCTCAGTACCATCCAGGAACTACAGCAGACACTGGAGAATGATGAGAAGTCAGAGAATGATGACGCTCAGGAAAGCTCCATGGAGAATGGAGAATGAATTCATCTCGGCTGTCAATGTAATTTAGTTAGGTACAATTTTTTTGATAATGCTTTGCATTTGAACAATGAAGTTTCACTTTAGTTGACATTTTGTTTTTATAATACCTGTATGTATTTTTGCTGAATAAAGTTGTCAATTGCTCTTCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU705207 lncRNA upstream 63619 51088019 ~ 51088431 (+) True G619890
TU705078 lncRNA upstream 115002 50997581 ~ 51037048 (+) False G619769
TU705287 lncRNA downstream 31759 51189822 ~ 51191983 (+) True G619953
TU705315 lncRNA downstream 92124 51250187 ~ 51251536 (+) True G619981
TU705592 lncRNA downstream 276218 51434281 ~ 51435206 (+) True G620230
TU705618 lncRNA downstream 288278 51446341 ~ 51446574 (+) True G620252
TU705653 lncRNA downstream 327853 51485916 ~ 51487101 (+) True G620282
XM_021608244.2 mRNA upstream 54602 51093272 ~ 51097448 (+) False psd6
NM_001165054.2 mRNA upstream 54675 51093338 ~ 51097375 (+) True psd6
XM_036983457.1 mRNA upstream 72921 50964092 ~ 51079129 (+) False LOC110527970
XM_036983459.1 mRNA upstream 72921 51008991 ~ 51079129 (+) False LOC110527970
XM_036983458.1 mRNA upstream 72921 51056415 ~ 51079129 (+) False LOC110527970
XM_036983470.1 mRNA downstream 94060 51252123 ~ 51418349 (+) False LOC110528964
XM_036983471.1 mRNA downstream 94061 51252124 ~ 51418349 (+) False LOC110528964
XM_036983472.1 mRNA downstream 94061 51252124 ~ 51418349 (+) False LOC110528964
XM_036983473.1 mRNA downstream 94061 51252124 ~ 51418349 (+) False LOC110528964
XM_036983474.1 mRNA downstream 94061 51252124 ~ 51418349 (+) False LOC110528964
TU705038 other upstream 78043 50960494 ~ 51074007 (+) True LOC110527970
TU703948 other upstream 847818 50303430 ~ 50304232 (+) True G618712
TU703098 other upstream 1531882 49572320 ~ 49620168 (+) False tafa4b
TU703100 other upstream 1531882 49586870 ~ 49620168 (+) True tafa4b
TU702226 other upstream 2324823 48826827 ~ 48827227 (+) True G617133
TU707063 other downstream 1233285 52391348 ~ 52391633 (+) True G621650
TU707108 other downstream 1333105 52491168 ~ 52493240 (+) True G621695
TU708825 other downstream 2595843 53753906 ~ 53754119 (+) True G623180
TU710327 other downstream 3665574 54823637 ~ 54824199 (+) True G624628
TU710684 other downstream 3889233 55047296 ~ 55052688 (+) False G624962

Expression Profile