RNA id: XM_036983469.1


Basic Information

Item Value
RNA id XM_036983469.1
length 2527
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC110527973
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 51179203 ~ 51207209 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTAACCTACAAAATGATGCATGATTAATAAGATATATTTTTCTACTTATACGACCAGACTAATGCGTGGCGCCTCGAGACGACATTCAGGCACTCAGTTACAATCACATCCTCTCATCCATTTCCGACGTGGGGAGGAGAGGCAGTTCAAACAATAAACACATCGTAGCCTAAATCGATAACAAAAAAATCTTATCCAATCGTAAAATATTGAAGCCATCGTTCATTTCCGTGAAGCCAATCCCCGTCTGTCTCTATGGTGTTTTATTTTTCAACAAGCTGACGAAAGCTCGGGTTTTTCCGTGTAGTAGCAATAAGAGCCGAGAGTCTTACACGCGCGAGGCATAGACATCAAGCGGTTTGGGTAACTCTGTACAATTGTTTTCTCTTACTGAACAAGGAGATAGGTATTTTGACAATGTTATCAGCTAATGAGCTCGTGTCTGTTGGGACATTTCAAGTGCTTAAATTACCTCTTGGATTTATCCGTGTTTTGGAATGGGTTGCACCAGGTGTCCTTCGAGGCTCCGCTgtgtgaggggaggaggagggagaggctcTTTCTCATCGGGGACTACACTTCCTCGGCTGAGTTCTTTGTCACCATCGCTGTGTTCGCCTTCCTCTACTCCTTCATGGCCACCATAGTCTACATCTTCTTCCAGAACAAGTACCGCGAAAATAACCGAGGCCCTCTGATCGACTTTATAGTGACCGTGGTGTTCTCCTTCATGTGGCTGGTCAGTTCTTCAGCCTGGGCTAAAGCCCTGTCGGACATCAAGGTGGCCACAGACCCAGATGAGGTGCAGGAGCTCATGTCTGCCTGTAAGGTCATGACCAACAAGTGTGGCTCAGTGCAAGGACCCCGCTGGTCAGGCCTCAATACCTCTGTGgtGTTTGGCTTCCTAAACTTCGTCCTGTGGGCAGGAAACATCTGGTTTGTCTTCAAGGAGACTGGTTGGCATAAAGGAGGACCAGCTCGGTACGCTGGAGCGCCTCCCGAAAAACAGGCTGAGACAATCAACCAGCAGCAGCCCTACAACCAGGGCAGTTTTGACCAGTCAGGAGGCTACAGCGCCCAGGGAGACCAGGAGCAGGTATCAGAATACAGTCCTGTGGGCGGGCCCACCTCCTACTCCAATCAGATGTAGCTTTGCAGTCTGATTGTCACACTGAAGGTGGGGGGGGACATGCAGTTCTTAGGTAGAAATATTCTGGTGCCAGAAAAAGTAAGTTGTCGATTGGTACAGTTAAACAGAAGTATTTTGGAGTATTGTACATAAAACTAGATTTTGGTTACGTTTTTAGATGTGTTGTCCTGAATGTTGTATTGCCTGTGTGTTGAGTCTGTTGATAGTTTCTCATTTTCTGTGCTAGGTGCTATGCCACAGAACCTTTTAACTGGATGTCTTTTTCATTGTGGAAGAAAAATGTGGTATACAATTGTATAATTCTTGAAGTTTCCTACATAGTGTTGACAAAGTGCATGCAGTTGTGCTATGTGTTACTATGCCTGTTTGTGCACATTGTATTTACGAAACCAGCAGGATTTCATCTCAGAGTTACAGTAAGGTATCAGCAGTAGTTTTACCTCACAAacgcaacatttaaagtgttgttCTAATTtttcatgagcagaaataaaatatcccaataattttccatatgcacaaaaagcttatttctcttacaattttctgcacaaatttgtttacatccctgttagtgagcatttctcctttgtcaaggtAATCCTGCATGCAGGGTTTATGTTCAGTGTAGTTACCGTTTCATTACACAAGATGCCCTTGCTCTAAAGGGGCTTTATGTGTTGGTTTGTGGGAAGTTTCTGATGTTAGTGTTAACAATTGTAAATGGGAAAAGTGTTTCTACCCGCTCTGTTTACAAATGGTCGCTCATGATTCAAATGAAAGGACTAGTTTTTTAAGCTGCTGTCAGACTACTGTGAAATGAAGAATCATTTCATACACCTCCGAGAGCGAGCTGGCTGAGTCCATTTAAGCACAAGGCCCCAGTGAAAATGGCCCAGAAGAACCTAGTTGCAATTAGAACAGTCAGCTCGGCCAAGCTGGTCTGTATAACCATTAGTGAACCCCTTCCATTTTCTCTGTCATGTTTTCTCTGTCTTGAATTCTATAAACAAATTAATTCAGGTTTCTATGACTTTCAAAAGTTTGTGCAATTAATAAAAATAGGCTAAATTAGAGAATGTCTGataatattgatgatgatgatgacgatgatgatgatgatgataattaaTTAACCCTGTGTCTTGAGCTCCAAAGCATGTGGCTTGCATTAACCTGGtaacaaaaaaatatgaaaaaaattcAAATAATTAAACGTCCATGTATGTACTTCCCTTCTGTCCGTGTAACATTAGAATGTGAACAATCTGAAAACCACTTACCAGCATTATTATTCTGTTCAAGATTACTGAGTGTGGATGATATACAAGCAATTTGAATAATCCTAATAAAGATGTtacacaaaaaacaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU705191 lncRNA downstream 100114 51077886 ~ 51079089 (-) True G619876
TU705145 lncRNA downstream 142142 50997573 ~ 51037061 (-) False G619833
TU705491 lncRNA upstream 43147 51250356 ~ 51250574 (-) True G620130
TU705601 lncRNA upstream 224237 51431446 ~ 51432983 (-) True G620236
TU705603 lncRNA upstream 226133 51433342 ~ 51433733 (-) True G620237
TU705880 lncRNA upstream 305001 51512210 ~ 51512411 (-) True G620500
TU705883 lncRNA upstream 306912 51514121 ~ 51515552 (-) True G620503
XM_021609622.2 mRNA downstream 27183 51097457 ~ 51152020 (-) True LOC110527971
XM_036983465.1 mRNA downstream 27187 51097457 ~ 51152016 (-) False LOC110527971
XM_036983463.1 mRNA downstream 27190 51097457 ~ 51152013 (-) False LOC110527971
XM_036983462.1 mRNA downstream 27194 51097457 ~ 51152009 (-) False LOC110527971
XM_036983482.1 mRNA upstream 241822 51449031 ~ 51726478 (-) False ptprga
XR_005052729.1 mRNA upstream 1246630 52453839 ~ 52453893 (-) True LOC118965403
NM_001124638.1 mRNA upstream 1376580 52583789 ~ 52658755 (-) True camk1b
NM_001165223.2 mRNA upstream 1462243 52669452 ~ 52672456 (-) False spcs1
XM_021609641.2 mRNA upstream 1484132 52691341 ~ 52696837 (-) False gnl3
TU705034 other downstream 220663 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 873047 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 1242922 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 1881955 49295255 ~ 49297248 (-) True mustn1b
TU702811 other downstream 1983233 49195604 ~ 49195970 (-) True G617632
TU708601 other upstream 2098327 53305536 ~ 53322831 (-) True G622985
TU711185 other upstream 3865270 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 3957283 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 4226247 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 5484114 56691323 ~ 56696091 (-) True G627254

Expression Profile