RNA id: XM_036983470.1


Basic Information

Item Value
RNA id XM_036983470.1
length 5151
RNA type mRNA
GC content 0.51
exon number 33
gene id LOC110528964
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 51252123 ~ 51418349 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGACGGTAAATTCCCGGTACCTTCCAGTGGTATCTTCCCAATCCGCGCGTTGCTTAGCAGGAAGCGGCCATCGATAGTTTCTATTGACAAATCAGGCATCAGGAAAATAAGTGGAAGTCGATGGTTGTCTGTTCTTTCTATCTTTCATCCGACACCTTCCCGTTCTCATAGATAGCATCCTAGCAAATCCCCGACGGTGACTGGAGAGTTAAAACGCTGAAAACGCGTAGCCTAAGCAACTACAATTTTATTTCGTTCGAATTCAGTCACTTTTTGTGCGAACAGTTTGAGCTACTCTCGTTCAACATCAGTCGCGCGCTTTCGTAATTCCTCTCCTCAACTGACATTTCCTGTTTTAAATATAGTttatctggatttttttctacttttttcccccactggcgTTGCCAACGCAACACAGATAGCCTGTCTCTGAACGCAGTCGTTCTTCGAAAAAACCTCCTGTGGCACTGAGACACATTGGTCTACGCTTTGTCCCCTGTCTAGATAGTCTCCACCCAAGACCAACAACATGTTGGACCCATCTTCCAGTGAAGAGGAAGCGGATGAGATAGTGGAAGAAGAAGGCAAAGAGGTGATGGCACCAAAAACCGGGGGAGCACGGGTGTCACCCAGCCGGACCACCGACAGTTCTGGTGGGCTCCAGCCCTCGAGCCGGGGAAGCAGCGCTTGTCCGTCCAACCCCAGCCCCTCGGCGGCCAGCGAGAAGGAGAAAGATGATCTGGAAAAGatgcagagggaggaggaagagcgaAAGAAGAGGCTCCAGCTCTATGTCTTTGTGATGCGCTGCATTGCCTATCCTTTTAATGCCAAGCAACCCACCGACATGGCAAGACGACAACAGAAGaTCAGTAAGCAGCAGTTACAGACAGTGAAGGAGCGTTTCCAGGCTTTCCTCAGTGGTGACACCCAGATAGTGGCAGACGAGGCCTTCATCAATGCAGTCCAGAGCTACTATGATATATTCCTGAAGAGTGACCGTGTGTCCCGGATGGTCCAGAGCGGAGGCTGCTCGGCCAGTGACTCGCGGGAGGTTTTCAAGAAGCACATTGAGAAGCGTGTCCGTAGCCTGCCGGAGATCGACGGCCTAAGTAAGGAGACAGTGCTCAGCTCCTGGATGGCCAAGTTTGACACAATCTACCGCGGAGAGGATGACCCCAGGAAGCACCAGCAGCGGATGACAGCCAGTGCAGCCTCAGAGCTCATCCTCAGTAAGGACCAGCTCTACGAGATGTTCCAGTCCATCCTGGGCATCAAGAAGTTTGAGCACCAGCTCCTCTACAACGCCTGTCAGCTTGATAACCCAGACGAGCAGGCTGCACAGATCAGGAGAGAACTGGACGGACGACTGCAGATGGCTGATCAGATCGCCAGGGGCGGCAAGTTTCCCAAGTTTGTGTCCAAAGAGATGGAGGCCATGTTCATAGAGGAGCTGAGATCCTCAGTGAACCTGCTGATGGCTAACCTGGAGAGCATGCCCGTGTCCAAGGGAGGAGAGTTCAAACTGCAGAAGCTCAAACGAGGGCACAACACCTCCATCATAGACATGGGCCAGGAGGACGAGAACACGCTGTCCAAGTCTGATGTGGTGCTCTCCTTCACTCTGGAGGTGGTGATTGTGGAGGTTCAGGGGTTAAAGTCGCTGGCGCCCAATCGGATCGTCTACTGCAccatggaggtggagggggggcaTAAGCTCCAGACTGACCAGGCCGAGGCCTCCAAACCAACCTGGGGGACCCAGGGGGACTTCACCACCACACACCCCCTGCCTGCTGTCAAGGTGAAGTTGTTCACTGAGAGCACAGGAGTCCTGGCCCTGGAGGACAAAGAGCTTGGCAGGGTGGTACTCCATCCGACCCCTAACAGTCCCAAACAGTCCGAACTACACAAGATGTCCGTGTCCAAAGGCTGCCCTGACAGTGACCTGAAGATCAAACTGGCCATCCGCATGGACAAGCCACAAAACATGAAGCACTGTGGGTACCTATGGGCTATTGGTAAAAATGTGTGGAAGAGATGGAAGAAGAGATTCTTTGTCTTGGTGCAGGTGAGCCAGTACACCTTTGCCATGTGCAGCTACAGAGAGAAGAAGGCAGAGCCTGTGGAGCTGCTTCAACTGGACGGCTACACTGTAGACTACACCGACCCTCAGCCAGGTCTTGACGGTGGGAGGACCTTCTTCAATGCAGTAAAGGAAGGTGACACTGTGATCTTTGCCAGTGATGACGAGCAGGACCGCATCCTGTGGGTCCAGGCTATGTACCGGGCCACGGGCCAGTCCCACAAGCCAATCCCCCCCACCCAGGTCCAGAAACTCAACAACAGAGCAGGCTCCGCACCTCAGCTAGACGCACCCATCTCCCAGTTCTACGCGGACCGGGCGCAAAAACATGGCATGGATGAGTTCATCTCAGCCAACCCCTGCAGCTTTGACCACTCCTCTCTGTTTGAGATGGTGCAGCGCCTCACCCTGGACCACAGACTCAATGACTCCTACTCCTGTTTGGGTTGGTTCAGTCCAGGCCAGGTGTTTGTCATGGATGAATACTGTGCTCGTAATGGTGTGCGGGGGTGTCACAGACACCTGTGTTACCTGGGTGACCTGCTGGAGAGAGCAGAGAATGGGGCTATGATTGACCCCACCCTGCTGCACTACAGCTTTGCCTTCTGTGCCTCACACGTCCATGGCAACAGGCCTGACGGGATAGGAACTGTCACTGTCGAGGAGAAGGAACGCTTTGAGGATATCAAAGAGAGGCTGCGTGTTCTGCTGGAGAACCAGATCACACACTTCAGGTACTGTTTTCCATTTGGTCGACCGGAGGGGGCCCTGAAAGCCACTTTGTCCCTGCTTGAGAGGGTGCTGATGAAGGATATTGTGACTCCTGTGCCCCAGGAGGAGGTGAAGACAGTCATCCGTAAATGTCTGGAGCAGGCAGCCTTGATCAACTACCAGCGCCTCTCAGAATACGCCAAAGTAGAAGggaaaaagagagaaatgTATGAGCATCCTGTCTTCTGCTTGGCGTCTCAAGTGATGGATTTAACCATTCCGGAGAAAACTCAGAAAGATAAGAAAGATCATCAGGATCAGGATCCAGAGAATGTAGGGCGCTTAGTCACCCCAGCCAAAAAGCTGGAGGACACCATCCGCCTGGCCGAATTGGTCATCGAGGTTCTCCAACAGAATGAGGAGCACCATGCAGAGGCTACAGTCACAAGTACTGGAAATCAGTTGGGCAAAGAGgCGTTTGCATGGTGGTCTGACCTGATGGTGGAGCACGCAGAGACCTTCCTGTCTCTGTATGCGGTGGACATGGACGCTGCTCTGGAGGTGCAGCCCCCTGACAGCTGGGACAGCTTCCCTCTCTTCCAGCTCCTCAACGACTTCCTGAGGACCGACTATAACCTGTGCAACGGGCAGTTCCATAGACACCTGCAGGACCTGTACGCCCCCCTTGTGGTGCGATATGTGGACCTCATGGAGTCATCTATCGCCCAGTCCATCCACAGGGGCTTCGAGAGGGAGTCCTGGGAGCCTGTCAAGAGCCTAACAAGTAATCTTCCTGATTTGAGTCTACCAAATGTCAAGCTCCAAATGCCCAAAGTACCAAATCTACCACCAGTTAGCCTTCTAACAATGCCTAGCTTTTCTACACCCAACTGGATGGCAGCTACATGTGACTCAGATAATGGCTCGGGGACATCCGAGGATCTGTTCTGGAAGCTGGATGCACTGCAGACCTTCATCAGAGACCTGCACTGGCCTGAGGAGGAGTTTGGCAAACACCTGGAGAGCAGGCTCAAACTCATGTCCAGCGACATGATTGAGTCCTGCGTCAAACGaACGAGGGTGGCCTTTGAGGCCAAGCTCCAGAAGAGCAGTCGGACCACAGACCTCCGCGTGCCTCAGTCCATCTGCACCATGTTCAACGTGATGGTGGATGCCAAGGCCCAGTCAGCCAAGCTGTGTGCCATGGAGCTGGGACAGGAGTTTGTTAGAGATTGGAGACAGTACCATTCCCAAATCGACGCTCTCATAGAGGAAACTGTGAAGGAGATGATCACCTTACTGGTAGCAAAGTTTGTGGTCATTCTAGAGAGTGTCCTAGCCAAACTGTCCAGATACGACGAGggcactctcttctcctccttcctctctttcacaGTGAAAGCTGCATCAAAGTATGTGGATGTACCTAAGCCTGGGATGGACATTGCAGACGGTTACGTGACCTTTGTGCGCCATTCTCAGGACATGCTGCGGGATAAGGTCAATGAGGAGGTGTATGTAGAAAGGTTATTTGCCCAATGGTACACCAGCACCATGAACCTCCTGGGTATGTGGCTGACTGACCGGATGGACCTACAGCTCCATGTCTACCAACTCAAGATCCTCATCAGAGTAGTCAAGAAAAAGTACCGCGACTTCCGGCTGCAGGGCGTCCTGGACTCCACACTAAACAGTAAGATGTATGACACGGTGCGGAACAGACTGACCCTGGAGGAGGCCACGGCGTcggtgagggaaggagggatgtcGGGCATATCCATGAAGGACAGTGATGAAGACGACGATGATGACTAGATCAACATCACCGGATGGAGCCTGTGAATCAATGCATGTACCAACTTTGTTAACCACTGGACCAATCTTATAGGGTTATTATTTTCCACTGTCAGATAGATAGAAATACCCACAAAGGAACAACAATACAAATTAGTAACCAAATACATAAATTATAATTATATTAGTTATTataattataaaatatatatatttatgtgttGAACTAAAAAAGTATAGgtgttttacaaaaaaaaaagtgaacaTTTGCCTAGCATTCACTCTTGAATGTTCCTAAGCAATATGGAGAGCCATGTATGCGATGTTGAGTACCATGATTAGGGATAATGCTTGGTGTGTACCTGTTGAATGCAAACCTGTTGAGGCGCTTTGCTAACGTACTGTGAATACAGTAATGGTACATCATTGTGAGGAGGAGAGTAACATCACCTATTGTTCTCATTCCTCTCAGAGCGTATGTCTACTGCCTAAAGGGAACCAAACTACAGACAGCCAGGCAACCTGTTTGTATCTAGATTACAATATATTATAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU705315 lncRNA upstream 587 51250187 ~ 51251536 (+) True G619981
TU705287 lncRNA upstream 60140 51189822 ~ 51191983 (+) True G619953
TU705207 lncRNA upstream 163692 51088019 ~ 51088431 (+) True G619890
TU705078 lncRNA upstream 215075 50997581 ~ 51037048 (+) False G619769
TU705592 lncRNA downstream 15932 51434281 ~ 51435206 (+) True G620230
TU705618 lncRNA downstream 27992 51446341 ~ 51446574 (+) True G620252
TU705653 lncRNA downstream 67567 51485916 ~ 51487101 (+) True G620282
TU705669 lncRNA downstream 89896 51508245 ~ 51508461 (+) True G620298
TU705679 lncRNA downstream 114077 51532426 ~ 51532700 (+) True G620308
XM_021609628.2 mRNA upstream 94060 51152050 ~ 51158063 (+) False thoc7
XM_021609627.2 mRNA upstream 94060 51152083 ~ 51158063 (+) False thoc7
XM_036983468.1 mRNA upstream 94060 51152240 ~ 51158063 (+) True thoc7
XM_021608244.2 mRNA upstream 154675 51093272 ~ 51097448 (+) False psd6
NM_001165054.2 mRNA upstream 154748 51093338 ~ 51097375 (+) True psd6
XM_021609631.2 mRNA downstream 11281 51429630 ~ 51433065 (+) True LOC110527974
XM_036983483.1 mRNA downstream 1026770 52445119 ~ 52489548 (+) False si:ch211-236d3.4
XM_036983484.1 mRNA downstream 1026772 52445121 ~ 52489548 (+) False si:ch211-236d3.4
XM_021609634.2 mRNA downstream 1051384 52469733 ~ 52489548 (+) True si:ch211-236d3.4
XM_021609638.2 mRNA downstream 1092921 52511270 ~ 52548815 (+) False LOC110527978
TU705038 other upstream 178116 50960494 ~ 51074007 (+) True LOC110527970
TU703948 other upstream 947891 50303430 ~ 50304232 (+) True G618712
TU703098 other upstream 1631955 49572320 ~ 49620168 (+) False tafa4b
TU703100 other upstream 1631955 49586870 ~ 49620168 (+) True tafa4b
TU702226 other upstream 2424896 48826827 ~ 48827227 (+) True G617133
TU707063 other downstream 972999 52391348 ~ 52391633 (+) True G621650
TU707108 other downstream 1072819 52491168 ~ 52493240 (+) True G621695
TU708825 other downstream 2335557 53753906 ~ 53754119 (+) True G623180
TU710327 other downstream 3405288 54823637 ~ 54824199 (+) True G624628
TU710684 other downstream 3628947 55047296 ~ 55052688 (+) False G624962

Expression Profile