RNA id: XM_021609639.2


Basic Information

Item Value
RNA id XM_021609639.2
length 3521
RNA type mRNA
GC content 0.47
exon number 16
gene id LOC110527979
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 52659634 ~ 52669736 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTAGTGACGAAAAAGCCAGTgatgatttcctgtgttttaaaAGCGTCTTGTACCCTGCGCTAAATAAGTTAGAAATCTGAATTTATAGTGTGCAGAAAATGGGAGATATTCACAGCCGTGTCTTCAATTAGTTAACTAGATTATACCCTTTGAATTTGGGGTAACAGTTAGACTGTACGATTTGAAGTCATGAATAATTACATGTTTATCAGAGTTGTTGGAAAGGGGAGTTATGGAGAGGTGAATCTGGTGAAACACAAAACCGACCGTAAGCAGTATGTCATAAAGAAGTTGAACTTGACCACGTCCTCGAAACGTGAGCGGCGAGCCGCGGAACAAGAGGCTCAGCTTCTCTCGCAACTACGACACCCAAACATCGTGACATACAGGGAGTCGTGGGAAGGAGAAGACTGCCAGCTCTACATCGTCATGGGCTTCTGCGAGGGAGGCGACCTCTACCATAGACTCAAGCAACAGAAGGGGGAACTCCTACCTGAAAGGCAGGTGGTGGAGTGGTTCGTCCAGATAGCTATGGCCCTTCAGTATCTACATGAGAAGTGTATCTTGCATCGGGACCTGAAGACCCAGAATATCTTTCTGACCAAGACTAACATCATCAAAGTGGGGGACCTTGGCATCGCCCGTGTTCTGGAGAATCAGAATGACATGGCCAGCACCCTCATAGGAACACCATACTATATGAGCCCGGAGCTGTTCTCCAACAAACCCTACAACCACAAGTCTGACGTGTGGGCACTGGGCTGCTGTGTGTATGAGATGTCCACCCTGAAACATGCCTTCAATGCCAAGGACATGAACTCACTGGTGTACCGCATTGTAGAGGGAAAGTTGCCTCAGATGCCGAATAAGTATGACCCTCAGCTGGGAGAGCTGATAAAGAGCATGCTGTGTAAGAGACCAGAGGACAGACCTGATGTCAAACATATCCTACGTCAGCCCTACATCAAACGACAAATCGCAATGTTTTTAGAGGCCACCAAAGAGAAAACTGCCAAGTCCATAAAGAAAGCTGTTGGTGGTAGTAGCAGAAGACCCAGCGCAGCGTCTATGGTTTCGTCTAAGCCCAGGCCCGAGCCCCCTCCTCAATGTCCCCAGCCAGACCTAAACACCAAAGGGAAAGGGGAGATGAACTCACAAAGGCGTAATGGATACAATGGAATCATAAAAGACGCCCCACCCAAGACATATCTAACACCCAAATTCCCTGCATCAGACATTCTCAACACCACTGGTGCATCCTTAGCAACCATCAGTAACATTGACATTGATATCCAGccacaggaagaggagagaagggccCAGAGAGGGGATCCCTCCCACCCTCGGCCTGCCCCTCGCAGGGTGCTATCAGGTGTCAGTtgtagggtagaggagaggaggaccgcCAATGGACCTCTAATGCAGTGCGCTTTGAATCACAGAGACGGAGTCAGAACCTCTGTAGAGAAAACTGTGAACATGGACGATAAGGATGACACAACAGAGCTACTCAAAGATGTGGTCATTGAGAGCCCTGCACCTGAACAGACCGTAAGTCTGAATGTTTCCACCAGCTTGCCTGAATCAAGGTCTGCAGGGGAATTCAAAGTGGAATCCACTGGACAGACTTTTGAAGTAAATATCGATAACAAAGATGACACCATGAATCTTCTGAAGGAGGATCccacacaaaaacatcctgcagATGTCAGAGAGAGCTTGGAATCCACAGAAAAGCTCCTAGAGACCCTTCCTCCTGTTATAACACTGGAACCCTGTCACATGGAGCACCTCTCTCCAGTCCCAGAGCAGGACACGCTCCCTCTGTGTACGCCTTCCTCCTCTGAGCCATTTGTCTCCCGGCAATGCAGGCAGAAGGACAGGAGGTGGATACAGAGTGATCCGGACAAGTGTAAAGTGACAGGTCCTAGACCTCTACCGCCTCCTCCTGTTGATGCAATGGtagtggaggagaagaagaggagcagGGCAAACACAGAGAAGAAGAGGGCTACCACAACAAACTCTTCCACAACCATTAACTCCTCAAAGGACAGCAACATTCCACTGACACAAGAGCGTCCTCTTTCagccagggagaggagaagactgaggCAGTCCCAGGAGAACCCAAGCCAACCAGTAAGAAGGGCGTCGAATGAGGTTGCCTCGTTACATAATAAGCAGCCAGAGTTCCAGAACcccactgtcactctctctgtatctgacATGGGCAAGGAAACAAACAAGCAGGACAGGTTGCTGGGGCGACCGTCTGACGACGATGAATACAGCTCCTCCACCAGCTCAACTGATCACTCTGAGAGGGACTGCAAAGAGGGaAAGAGTGAATCCAGTGATTTGCAGGACCTGGTTCAGAGGATGGCCCATACATTGCGAATGGATGGCAGAGATGCTGTTAGTGAACTGGATGGTGGTGGTAGATCTGGCTCTACTCCACTGGCTGAGTTTAAgttgaacaggaagtacagggaCACACTGGTGCTGCATGGGAAAGCTAGAGAGGAGCAGGAGTTCCACTTCAGTGAATTACCCAACGGCACCACATCTGGACCGGCGAAGGTCCGCAGAGCCATTGAGCACCTGAGAACAGATGTGGTGAAGGGACTGGGGGTGAAGCTGTTGGACAGAGTCCTGGACATAATGGAGGACGATGACGAGGACAAACGAGAGCGGTGTCTTCGGGAGCAGATGGGAGAGGACAAGTACCAGTCATATGCGCTGATGGTGCGGCAGCTAAAGTTCTTTGAGGATGTTTCGTTCAAGGGTTAAGTTCAGCTAATGAACAATGCAATACTTTTGTATAGACAATCGCATCTCCATATTCTATGTATAAATTAATGTAGACTATTTTAAAACCTCActttaaatataaatacataatcTAATTTTCCATTAAGGTTACAATATGCAATGAGTCTTCTGTTACCGTTTTTCTACCTGTCAGGTAGATTGATTATTGTAATGAAATATTTATAATGCAAACTAGTGCAATAATAAATGTACCTATAAACACATAGGAAATTCTTAATTTCCTGATTGTATATAAGTTGCAGGATGTAGAAGTACTGTATTGTAGATATTTCCATCCCCTTTGTTTGACTTTATAAAATCATTTAAAGTTCTTTATTTATCCTTACATTACATAGATTCTTATATCCACATTATTAAACCGTTGGGATGATAACATGAGTGCAGTCTACAAAGTATCCACAGTAGCAAATCTGTTTATTGTACATTGACATTCCACCACTGTTTGGCATAATACCCTGTAACAAAGGGTTCCTTTAAACAAGGATTTATTGTACAGACATAGGGTTATTTTCAGTCACAAAACGTGTCTTGGGCAAACTGGTACAAACAGTCATGATCTACTtgtgcttcttcttcttcagatTCTCCTGAGGCTTTTGAAGGGTTTCTCCTGTAGTCTCTGGTAGGGCTGGCTGCCAGGAGAGGGGGTTCTGTCTGTACATGGGCCAGGGGGGCAGGGTCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU707232 lncRNA upstream 229 52658988 ~ 52659405 (+) True G621812
TU707169 lncRNA upstream 92123 52567156 ~ 52567511 (+) True G621756
TU707168 lncRNA upstream 92742 52566672 ~ 52566892 (+) True G621755
TU707159 lncRNA upstream 109506 52549899 ~ 52550128 (+) True G621746
TU707137 lncRNA upstream 158556 52500823 ~ 52501078 (+) True G621724
TU707244 lncRNA downstream 6002 52675738 ~ 52676043 (+) True G621821
TU707245 lncRNA downstream 6517 52676253 ~ 52676622 (+) True G621822
TU707273 lncRNA downstream 58791 52728527 ~ 52728802 (+) True G621850
TU707289 lncRNA downstream 103876 52773612 ~ 52783288 (+) True LOC110527982
TU707639 lncRNA downstream 238873 52908609 ~ 52908814 (+) True G622182
XM_021609638.2 mRNA upstream 110819 52511270 ~ 52548815 (+) False LOC110527978
XR_005052600.1 mRNA upstream 110819 52511270 ~ 52548815 (+) True LOC110527978
XM_036983483.1 mRNA upstream 170086 52445119 ~ 52489548 (+) False si:ch211-236d3.4
XM_036983484.1 mRNA upstream 170086 52445121 ~ 52489548 (+) False si:ch211-236d3.4
XM_021609634.2 mRNA upstream 170086 52469733 ~ 52489548 (+) True si:ch211-236d3.4
XM_036983488.1 mRNA downstream 11979 52681715 ~ 52691282 (+) False LOC110527981
XM_021609647.2 mRNA downstream 11981 52681717 ~ 52691283 (+) False LOC110527981
XM_021609644.2 mRNA downstream 12108 52681844 ~ 52691282 (+) False LOC110527981
XM_021609646.2 mRNA downstream 12113 52681849 ~ 52691282 (+) True LOC110527981
XR_005052601.1 mRNA downstream 38876 52708612 ~ 52713563 (+) True LOC118965296
TU707108 other upstream 166394 52491168 ~ 52493240 (+) True G621695
TU707063 other upstream 268001 52391348 ~ 52391633 (+) True G621650
TU705038 other upstream 1585627 50960494 ~ 51074007 (+) True LOC110527970
TU703948 other upstream 2355402 50303430 ~ 50304232 (+) True G618712
TU703100 other upstream 3039466 49586870 ~ 49620168 (+) True tafa4b
TU708825 other downstream 1084170 53753906 ~ 53754119 (+) True G623180
TU710327 other downstream 2153901 54823637 ~ 54824199 (+) True G624628
TU710684 other downstream 2377560 55047296 ~ 55052688 (+) False G624962
TU710686 other downstream 2377560 55047296 ~ 55052688 (+) True G624962
TU710695 other downstream 2400896 55070632 ~ 55072387 (+) True LOC110528007

Expression Profile