RNA id: XM_021609641.2


Basic Information

Item Value
RNA id XM_021609641.2
length 2472
RNA type mRNA
GC content 0.45
exon number 15
gene id gnl3
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 52691341 ~ 52696843 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccAGTGTGTACCCAGTGGGATAGTGAATAATACCAACCCCACTTTTATTTTGGCACCTAGAATAGTTTATAAGCCTATATGTAATTGATATGCCTATATTGTATTACAGTGTATTACGTGGGGTACTTTTATTTAGGAAATGCCGTGACCCGGAACTACTTTTTTTTGTGCTGTTGATGAGACAGCTAGCTCCTGGTTCCACGTGCAGCAGAATTTTGTAATCGCATTGTCAGACCTATAGCACTGCAATGAAGCGTCCAGGGTTAAAGAAAGCAAGTAAACGCGTGTCTTGCTCCAAACGTTACAAAATACAGAAAAAGgtCCGGGAACACAACAAAAAACTAAGAAAAGATGCAAAAAAGAAAGGAGTTGGCAAAAAAGTGAAAAAGGATATTGGAGTTCCCAACAAAGCACCATTCAAAGAGGATATTCTGAGGGAAGCGGAACAGAGGAGGTCAAAGCTTGAAGAAGAAAAGGAGAAAAATAAGCTTGCAAAGCAACAAGAACGGGCTCAGAAGAGGAAGAAGGAAAACTCTGCCAGCAGGGATGCAGACCCTAAAGCGAAGAAagctagaaagGAGTTACCGTCACAGGAGGTCCTTGTGAAACAGATGGTGAAACAAAGTGACCCAAGGAATTCAAAGAAGCACCTTTGTTCAGAATTAAACAAGGTGATCGATGCCTCTGACATCATCGTTGAAATCCTAGATGCAAGAGATCCCCTTGGCTGCAGATGCCCACAGCTAGAGGAAGCTGTGCTGAAGGGGGAAGGAAACAAGAAGCTACTATTCCTGTTGAACAAAATAGATCTTGTCCCTAAAGAGAATGTGGAGAAGTGGCTACAGTGTCTTCAGCTTGAGTTCCCTGCTGTGGCGTTCAAGGCATCCACACAACAACAGGACAAAACAGTGCAAGAGAAGAAGGCCAGGTTTGCAACTCTTAACGGAGTAGTAGACCAGACCAAAGGAGTGGCCTGTTATGGCAGCAGCAGTCTTCTCCAGCTCCTGGGGGACTATGCAAATGCAACAGGGAGAGAGGGCTCACTAAAAGTGGGCTTAGTCGggTTCCCAAATGTGGGGAAGAGCAGTCTGATCAACAGCCTGAAGGGGATGAGGGCCTGTAATGCAGGAGTCCAGAGAGGGATCACCAGGTGCTTCCAAGACATCCACATATCTAAGAATGTCAAAATGATTGACAGCCCTGGGATAGTGGCAGCCCAGTCTAACCCAAAAGCTGCCATGGCGCTGAGGAGTCTCCAGGTGGAGGATAAGCAGGAGACTGTTCTAGAGGCCGTCAGGACCCTGCTCAAACAGTGCAACAAGCAACAGGTAATGCTTCAGTACAATGTTCCAGACTTTAGAAACTCCCTGGAGTTTTTATCCTTTTTTGCCAAGAAGCGTGGATTTTTACAGAAGGGTGGAGTCCCCAACACAGAACTGGCTGCCTCTACCTTCCTCAATGATTGGACAGGTGCAAAGCTGAGTTACCACTGCAAAGCCCCTGAGAAGCCAAGCCTTCCCCCATACCTCTCTGAAGACATTGTAAGAGAGATGCAGAAAGGGTGGGACTTGGACAAGTTGCGGAAAGGCAACGAGGAGACTCTAAGAAGTGTAAAGTTCCCAAACCAGGCCAGCAGCATTGTCCTCCTGTCTAAAGGCCCCACTGCCGGAGTGCTGAGTGACGTTGTTGAGGacaaacctgctccagagcccacTGAGGAAGATATGGAGGGTAGCTGTGAAAACAAAGAGGCTGGTGGGGTTAAAGAGGTGTCTGAGGAAGGGACTGCGGAAACAGATGAACCACAAATAAAGACACCACTCACAAACAAACAAGCCAAGGTGGGGTTACAGGTTCCTGTCCCAGTCAACATTGACCTCTCCTCAGTCCACACAGATGACACCTATGACTTCAACACAGATTTTAAATGAACATCTGTCCTTTTTGTTTCTCAAGTCTTTTCCTTGTCACGTCTAAACTATACTGGCATCATCTGTTCTGTAAACCTGTGTGACGGAAAATCTTATTTTAGTGGCTTAAATAATCCTTGGTTCTTGGTAAAGATATGAGGGGGAGGTGACATGACCCTCTCCTAAGGACCATCTGGCAGAACACCCATAACATGTTCTATAGGTTAAGATAGATGTTGCTGGAACCAACCCAATGAACTATGCAACGTGTCGGTAACCAGGATGAGCTCTAACAGGACTGCCCTGAGAGTTCCTGACAGACGTGTACGATGATGCATCAAGTTTGTTAGAACCTCTCCAGTTTAATTATTTATTAACAGTGAAGATTGACTTATTTGTCCCTGTGTAGAATTTCCATGACAGGCTATTGGAATCAAGTGACTGTTTAAGGCCTCTGTGTGGATGTAACCTGTATAATGAGTTGGTAAATGGTTTGCCTTGAGTACAGGTCCATGTGaattattgtatatagcctcaaaacaaaTAAATGTATCCATAATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU707511 lncRNA downstream 16623 52673023 ~ 52674718 (-) True G622061
TU707506 lncRNA downstream 18852 52669452 ~ 52672489 (-) True spcs1
TU707441 lncRNA downstream 128581 52562549 ~ 52562760 (-) True G621993
TU707436 lncRNA downstream 133785 52557243 ~ 52557556 (-) True G621988
TU707401 lncRNA downstream 184370 52506727 ~ 52506971 (-) True G621955
TU707538 lncRNA upstream 23904 52720741 ~ 52720961 (-) True G622088
TU707836 lncRNA upstream 152056 52848893 ~ 52857351 (-) True G622357
TU707837 lncRNA upstream 152846 52849683 ~ 52857693 (-) True G622358
TU707838 lncRNA upstream 153654 52850491 ~ 52858404 (-) True G622359
TU707841 lncRNA upstream 163114 52859951 ~ 52860161 (-) True G622362
NM_001165223.2 mRNA downstream 18885 52669452 ~ 52672456 (-) False spcs1
NM_001124638.1 mRNA downstream 32586 52583789 ~ 52658755 (-) True camk1b
XR_005052729.1 mRNA downstream 237448 52453839 ~ 52453893 (-) True LOC118965403
XM_036983482.1 mRNA downstream 964863 51449031 ~ 51726478 (-) False ptprga
XM_036983469.1 mRNA downstream 1484132 51179203 ~ 51207209 (-) True LOC110527973
XM_021609654.2 mRNA upstream 88830 52785667 ~ 52826537 (-) False LOC110527983
XM_021609656.2 mRNA upstream 88830 52785667 ~ 52826537 (-) False LOC110527983
XM_021609657.2 mRNA upstream 88830 52785667 ~ 52826537 (-) False LOC110527983
XM_021609658.2 mRNA upstream 88830 52785667 ~ 52826537 (-) False LOC110527983
XM_021609659.2 mRNA upstream 88830 52785667 ~ 52841769 (-) True LOC110527983
TU705034 other downstream 1732801 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 2385185 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 2755060 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 3394093 49295255 ~ 49297248 (-) True mustn1b
TU702811 other downstream 3495371 49195604 ~ 49195970 (-) True G617632
TU708601 other upstream 608699 53305536 ~ 53322831 (-) True G622985
TU711185 other upstream 2375642 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 2467655 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 2736619 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 3994486 56691323 ~ 56696091 (-) True G627254

Expression Profile