RNA id: XR_005052601.1


Basic Information

Item Value
RNA id XR_005052601.1
length 3138
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC118965296
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 52708612 ~ 52713563 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCGAATTTTGATGCAAGACGATGTCTGTTCACTAAATGATCTGTTTGAATAATGTATTGGGAATAGAGTCGTAATTAAAATGCTAAATCAAAGACGAGACAGTAACTTAAATCAAATTAATTCTGAATAATAACGGGGAAACAATTACGATAGATTTGTGCCCATCGAAATGTTCTTATAAATTTAGCGAATTGGGAGATGAGagatgttgattgatgttgtaaaCTCTAATTCAGGATTCAACAGATGTGATAAATTAGGTTTGGTTTATCGAACCCGTACTACTGTTGCTGCAGAcagccaacaattatttacaattCTTTGAAAGTCGTTGCGGATCGGGTCGAGGTTGAGCGCTTGTTGATGACATCACTCGCAAGGCACTTTTGTCGCCACGGAAATTATGTCGTGACTAGGGGTAACGGAGAAAATTGTTTGTGTCTTTTAGAAGGAAAACGCGTGCATTATTGTTTTGAGTCTCTTTTCAGAAGTTGATAAAAatgtcaaaatacatttttaaaagtagtttGTAAGTCATCAGGAAAGATGCTAAAAACTAGCAGCTGATTCGCTAGGTGGGCATCATTGATTTGTGGCGTTGATTTGGACTGTATTAGGCTATGAGAAAGGGAGACTGAATGTCTGAATTGTAAAACATCATGGTAATGGATTCTGATAGTTATTGATTCCTGGTTTGATTGTTTATGTAACACCAGTGAATTTGAGCACtgtttccattatgtggaacCAGGTTAGGGTATTAATGTTGAAAAGCAACCTCTATAGTAAAAAACAATTGCATATGTTTTGGGAAactagctaggttgaatttggttatttgagcttTTCCTCTCTGATACGTAGACATCTGTAACAGGGGCAAGATGTTTTTTCTTGAGGAACATGCAGATGATGTTTTGTTTTATCGAGACGTAAATGTGAATtacaggtgaagtcactcaatccagtccctgAGGCCTGTTGGAGGGACCATACCAAGGAAtcctggtgacagctagctgaaagaACTACCCGGATTCATATCACACTGCGGGAGGGACACCTtgacactgtcgaacaataacagagttcgagaggagaactggaattaacagaattctgggggccatctctcgaatgaagAATACCTTACCTGTCCTTTCCTTACTGTTCTTGTTCATAGAAGTGAAAATGTGTCTGACTCTTGCTAATGATGTGTTTTctggaagagggtggggctttatAGGTGAGCTGTCCATCCTAAGCTGTATGGTTGGGAGACCTTATTACTACACCATGAACCCGAGAAGGCCAGAGGGTAATATTGACATAGTTAAACAAGGAGAAATTAGTATTAACCAAGCATAAGAGATCACTTGATCTGGATAAACAGGAAGTGAGAGTAGGATAGGGAGGGATGTCTCAGTGGAGTTCTATGTAGACCAAGTGGTGTCTCTGACTCCTTGGCAGTTCAGGACTAAGAGTAGCTATTATGGAAGAAATCTATGCTAGTCTCTGTGTAGTTCATGGAAACAAGTTATAGCTCACATCATGTGAGGAGGCTACATAAATCTACATACCCAGCATGGAAGGAGATGGAGTGTAGTGAAAGTAAGGGTTTCAGTTGATAACCTAGTGCATTACAGGTAGAAAAAGTTAGAGCAGCTGATTGCTCTATAGTCAGTAGAATACAAGCAGAGTCCCTGACAAAGCAGATACTGACTGTGGAGTTGTCCAGAGCCAAGCGCCGGTGTGGATAGTTCAGAAATGGAATTATTCACCTAAGGGAACAGCCTGTATGGTAAAGCTATTCATGGAAGCAGGAAAGCCAGATAATAAGTTGTATGGATTTGCACTATTTATATCCACATGTTCCTCTGAAATCTGAGCTTCCTCCTTTCACAGAGGCAACGGGAGACTGTTTATTGTTTGATTCAGTATAGTACTCCTGGGAAATATGTGGGGCAAAATCAGTACCGCAATAGGACAGATAATGTTACTTCTGATGCGACCAATGagtgatttgaaaggctggttgaGATCTGGGGATTTCAGTAAGATAAGGAGGCCCAGGGCTCACATCTGTTGGTTGTGTGGGAGAATGACATGATGGCCCGAGTATTACTGGCTAATTGAACAGAGGTATGTGTACTGGTACATTTGAGAATGTCTTTCACACTCATTCAACACCATGACATGATGTTGACTAAACGAGAGAAAAGAAGTACTCCGACTGGTTCTTTTGATGATAGGGTTTGTATTAATAACATTGTGGTTCCAAAGGTGGCAGATGAGATCAAAGCTATAAATTAGATCCTGGCAGGATTAGAGTCAAGTATTTTTTGGTGGTCCACTCTCAATGAGAATGTGGATTGGATCAATTATATCTGTTAAAAATCCACAGCGCTTCACCAATTATATCAGAGAGGTAATGAATGGTTTGGCAGAATAGAATAGTCTTGGATGTTTGCCGGCTGAAAAGGGTAGGAGGAGTGTATGGAGGTAATTTGGACTCCGGGGATATACAGTTAGGATGGATCAGTGACCAAGGCCTTGTCTGGTTTACACACCCTAGTTCACAAGTTGGCAGTAAACTCAGGGGTGGATACTTCTCTGACTAATTGGGTTGACAGTGTGTTTGGAAGATGGAAAAATGTTATGATTACTGTGTTATGGGCTACCttcacctgtgtgactgtgttagttTTGTACGGATGTGGTTGATTACGTGTATGAAAGTTATAATTTCCAGGACTCTGGAGAAATCAATGACACTTCAGATGGTGATATATGGACCAATCCTAAGGTCTGACCAGTGGAATACAAAATACATGGCTTGGACGTAATAGAAGAATCCGGATCTTTTCACTTGCGAGGAGACCATATTTGGTGTCTGCATTGACACTCAATAGCCTCATCCTTTAAATATATGGAAATGAAAATCAATAGAAGATTGAGGCTCTTCCACCTAAAACCAAGCCGGGGCACCGATATAGATTCACACATGTCTCAGCCTGAGTTACTTTAGCAAGAAGAATAATAAAGATACGAATATTACTGAACCGGAGCACGTGAGAAATCACACCACTGTTTCATGATcagattcaaataaaaaataaaaaaagttatcCAATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU707245 lncRNA upstream 31990 52676253 ~ 52676622 (+) True G621822
TU707244 lncRNA upstream 32569 52675738 ~ 52676043 (+) True G621821
TU707238 lncRNA upstream 41059 52667131 ~ 52667553 (+) True G621816
TU707232 lncRNA upstream 49207 52658988 ~ 52659405 (+) True G621812
TU707169 lncRNA upstream 141101 52567156 ~ 52567511 (+) True G621756
TU707273 lncRNA downstream 14964 52728527 ~ 52728802 (+) True G621850
TU707289 lncRNA downstream 60049 52773612 ~ 52783288 (+) True LOC110527982
TU707639 lncRNA downstream 195046 52908609 ~ 52908814 (+) True G622182
TU707680 lncRNA downstream 245415 52958978 ~ 52976643 (+) True G622216
TU707774 lncRNA downstream 390987 53104550 ~ 53116589 (+) True G622304
XM_021609647.2 mRNA upstream 17329 52681717 ~ 52691283 (+) False LOC110527981
XM_036983488.1 mRNA upstream 17330 52681715 ~ 52691282 (+) False LOC110527981
XM_021609644.2 mRNA upstream 17330 52681844 ~ 52691282 (+) False LOC110527981
XM_021609646.2 mRNA upstream 17330 52681849 ~ 52691282 (+) True LOC110527981
XM_021609639.2 mRNA upstream 38876 52659634 ~ 52669736 (+) False LOC110527979
XM_021609648.2 mRNA downstream 23038 52736601 ~ 52783292 (+) False LOC110527982
XM_036983489.1 mRNA downstream 24421 52737984 ~ 52783292 (+) False LOC110527982
XM_021609651.2 mRNA downstream 24422 52737985 ~ 52783292 (+) False LOC110527982
XM_021609650.2 mRNA downstream 24423 52737986 ~ 52783292 (+) False LOC110527982
XM_021609653.2 mRNA downstream 24423 52737986 ~ 52783292 (+) False LOC110527982
TU707108 other upstream 215372 52491168 ~ 52493240 (+) True G621695
TU707063 other upstream 316979 52391348 ~ 52391633 (+) True G621650
TU705038 other upstream 1634605 50960494 ~ 51074007 (+) True LOC110527970
TU703948 other upstream 2404380 50303430 ~ 50304232 (+) True G618712
TU703100 other upstream 3088444 49586870 ~ 49620168 (+) True tafa4b
TU708825 other downstream 1040343 53753906 ~ 53754119 (+) True G623180
TU710327 other downstream 2110074 54823637 ~ 54824199 (+) True G624628
TU710684 other downstream 2333733 55047296 ~ 55052688 (+) False G624962
TU710686 other downstream 2333733 55047296 ~ 55052688 (+) True G624962
TU710695 other downstream 2357069 55070632 ~ 55072387 (+) True LOC110528007

Expression Profile