RNA id: XM_021609648.2


Basic Information

Item Value
RNA id XM_021609648.2
length 2943
RNA type mRNA
GC content 0.52
exon number 16
gene id LOC110527982
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 52736601 ~ 52783292 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGAGTGTGTGGGATCTGTACAGCATTCTTCTCAAGTCAAGTCTGTTTGTCCATTTTAACCATTGCAATGCCTAATGGAGCAAATATCATGACTAGAAAATATACTCTACTAATTCATGCAGGGGCTTATCCAAGACCCAGTGGTACAGCACACATTGTGGTGGAGGAATCGTCCCAGACAACCCTCCCTCTGAACAGGCAGGCACCCCAGCTGTCAGTCTGAATTAGGCCAGGCCTTAGATCCCCACCACGaatcaggacaggacagactaaGTCCTCCGATAGGGAGTCAGAGTACAGGCGAAGAACGGGACGGCAGCTCCTCTCAGGATACAGTCCAGACAAAGTTTGCAGAATTCACCCAGAAAACAACAATTCGGCACAGACTGAGACTTCTGGATCCTACAGTGTTTTATAGCACTATCTACTCTTACCAGTGGCTGCTGGAAAAGGAGGAGAAACTGCTGCCTGAGGCCTGAGAACAGGGAGGCTAAGTTTCTAACACTGCCACACAGGCAGCTCAACAGTCATGTCAGCCTCCCTCCTGGACGCTGATCCCATCTATGCCACGGTTGTCCACACTGCCAAGGCCAAGGCATGGGAGTCACCAGGTGCCGTGTCTGTACCTCCAGTCAGGCTGAGGGCTCCGGTGGACCTGAAGCTGACCCGCAGCCTCTCCAAGTCAGACTCAGACCTGTTTGCGTCTTCCCTGAGTGAAGAGGATGGGGGTCTGAACGGCCACTGTGAGTCTGTGACCAACTGCAGCTCTGGGAAAAAACGGATGGAGAGATCGCCCTCCTTCGCCTCAGAGTGGGATGAGatTGACAAGATAATGAACCTGATTGGAGCAGGCATCGAATCGTCCAATGACAAGCAGTGCATATCCCCAGATGGGGCCTGCAGCAAAGCCCTGGACCAGCCCGTGGGAGAGTGGCTGGAGCATGTGGGGCTGCCACAGTATGAGAGCAAGCTGCTGCTTAATGGCTTCGACGACCTACGCTACATGGGCAGTAACGTGATGGAGGACACGGATCTTAGAGATATGGGAATCACTGACCCTGGCCACAGAAAGAAGATCATCCGTGCAGCACGCAGCTTGCCCAAGGTGAAAGCCCTGGGCTGTGATGGCAGCACCTCTCTGTCCACCTGGTTGGATGTGCTAGGCCTCCAGGAGTACCTGCCTAACTTCCTGTCCAGTGGCTACCGTACCTTGGACTGTGTGAAGAATCTATGGGAGCTGGAGATTGTCAATGTGTTGAAAATCAGCCCCCTGGGCCACAGGAAGAGAATCATAGCGTCTCTGGCAGAGCGGCCCTATGAGGAGGCCCCGACCAAATCACAGATCTCTCACCGTCTCTCACAGATCAGGTTTCAGGACCTGTTGTCCCAGACAGGGACCTCTCCTCTGAGTCAGATGGACCCTTCCACCAGTCGCTCCATGGACATGCTCTTGCCCttgggagagggaggcaggaggaggagagccATGGACCAGGATTGTAGCGTGTCCCTGCGCTCCTACAGCGAGAGACCCCGCTCCCACGACAGGCAGAGTGACCGACAAAGGGAACCCCGTTTGACCCTCCGGCCGCCGAGCCAGTCTGCCACGTACACCACGGTCTCTGCTTGGCATCACCAGCCTGAGAAACTTATCTTAGAGTCTTGCGGGTATGAGGCCAGTTATATGGGATCAATGATTATCAGGGATCTAAGGGGGATTGAGTCCACTCAAGAAGCCTGTGCTAAAATTAGGAAGTCAAAGGACCATTCAAAAAAGGGTCCTGTTGTCATCCTCTCCATCACTTATAAAGGGGTCAAGTTCATTGATGCCGCCACTAAGACAATAGTAGCCGAGCATGAGATCAGGAACATCTCCTGTGCGGCCCAGGACCCCGATGACCTCTGCACCTTCGCCTACATCACCAAGGACAGTAAGAGTGGCCACCACTTCTGCCATGTCTTCAGCACTGTGGAAGTGACTCAGACTTATGAGATCATCCTGACACTGGGACAGGCATTTGAGGTGGCCTATCAGCTGGCTCTCCAGACCAAGGCCAGGCAGTATGTCCCAGTCCCCCCACCGTCtctggggtcagaggtcattgaGACCAAATCCAGCCGGCCCACGTCACAACAATGGAGCAGCATGAGGAGATCAACAGGTGCCCCTCTGCTAGAATGCCGCTGCTGTTACTGTCACACGTGTACTACCCACCGCCCCTCCTTCCTCCCGTTGCACTCTGTTAGCCCTGGAGTCCagATTGACCCTCTGGAGATGGACGCAGACATGCAATCCCTGGGCAGCGCCACCTGGCTCTTCAACCAGAGAGACTCCAACAAGCGCCCTGTCAGCACCAACTCACTCCAGCGTTCAAGTTTCCGGACACCAAGCTGTGAGTTGAAGTGGAGCAGCCAATGTGAGTGTCTGCGTGTGTagactagagacagagagactaacaGAGACACAAGCAGCGGGTCTAGGAGTGACTGTTTGATAAGGTCTGCTGCCTTCTACAACCTCACCTGAATACAAAGTAACAGATAAAGGATAACCTTACACTAGCTGTCTGTCTCAACTGGGCATGGCAGGGCCTGTCTCTCACTCCTATCTCTAAAGTTCAGTCTGAAATCTCCTCCCTGGCCTCACACTGACTGTCTTTACCTCCACTCCTTACTTCAAGTAGGTACTGTAATCTGCAGAGTATAGACAATTAATGTTGGGCCAGTAATGACAATTTTTATTGATTTAGGTCTATTTGAGATAATCATGTTGTTACTGTAAGGATCTAGGAGAGTCAACGCGAGAGTACATTCATCAAATGTAGCACTACTGTACCAGCATAATAATGCTATGCCCATGTATTTGTGGACAGAGTATAGTTTGTCAATGATTATGTGATGTTTATTTATTCCAATTAAAAGCAAAATATACCTGAAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU707273 lncRNA upstream 7799 52728527 ~ 52728802 (+) True G621850
TU707245 lncRNA upstream 59979 52676253 ~ 52676622 (+) True G621822
TU707244 lncRNA upstream 60558 52675738 ~ 52676043 (+) True G621821
TU707238 lncRNA upstream 69048 52667131 ~ 52667553 (+) True G621816
TU707232 lncRNA upstream 77196 52658988 ~ 52659405 (+) True G621812
TU707639 lncRNA downstream 125317 52908609 ~ 52908814 (+) True G622182
TU707680 lncRNA downstream 175686 52958978 ~ 52976643 (+) True G622216
TU707774 lncRNA downstream 321258 53104550 ~ 53116589 (+) True G622304
TU707786 lncRNA downstream 356261 53139553 ~ 53139766 (+) True G622316
TU708020 lncRNA downstream 365017 53148309 ~ 53148515 (+) True G622538
XR_005052601.1 mRNA upstream 23038 52708612 ~ 52713563 (+) True LOC118965296
XM_021609647.2 mRNA upstream 45318 52681717 ~ 52691283 (+) False LOC110527981
XM_036983488.1 mRNA upstream 45319 52681715 ~ 52691282 (+) False LOC110527981
XM_021609644.2 mRNA upstream 45319 52681844 ~ 52691282 (+) False LOC110527981
XM_021609646.2 mRNA upstream 45319 52681849 ~ 52691282 (+) True LOC110527981
XM_036981846.1 mRNA downstream 99208 52882500 ~ 52903136 (+) False glut1a
NM_001124276.1 mRNA downstream 99236 52882528 ~ 52901289 (+) True glut1a
XM_036983493.1 mRNA downstream 139585 52922877 ~ 53091054 (+) False LOC110527984
XM_036983495.1 mRNA downstream 266431 53049723 ~ 53091054 (+) False LOC110527984
XM_021609666.2 mRNA downstream 281975 53065267 ~ 53091054 (+) False LOC110527984
TU707108 other upstream 243361 52491168 ~ 52493240 (+) True G621695
TU707063 other upstream 344968 52391348 ~ 52391633 (+) True G621650
TU705038 other upstream 1662594 50960494 ~ 51074007 (+) True LOC110527970
TU703948 other upstream 2432369 50303430 ~ 50304232 (+) True G618712
TU703100 other upstream 3116433 49586870 ~ 49620168 (+) True tafa4b
TU708825 other downstream 970614 53753906 ~ 53754119 (+) True G623180
TU710327 other downstream 2040345 54823637 ~ 54824199 (+) True G624628
TU710684 other downstream 2264004 55047296 ~ 55052688 (+) False G624962
TU710686 other downstream 2264004 55047296 ~ 55052688 (+) True G624962
TU710695 other downstream 2287340 55070632 ~ 55072387 (+) True LOC110528007

Expression Profile