RNA id: XR_005052604.1


Basic Information

Item Value
RNA id XR_005052604.1
length 2783
RNA type mRNA
GC content 0.52
exon number 23
gene id LOC110527984
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 52922877 ~ 53091054 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggattgagagagagggggggaagaacaGAAAGAGGAAGACAGTATTTTCACCATATGAAAGGGTAAAAAAGAGAACTATACAAAGCAAGAGAGGCAGGgcaaataagagagagagaggcatagttATTAACAGTGGGAGGTGGAGAAACgcagtgcctctctctctctctacttcctcgagaacagacagagtgtgtgaaaagaggaagagaaggggaggatCTTTACAGTCAGGCACATGCTCACACAAATATAGTACATACAGATCTATACCCACAGACACACCCATGCATTCTAATGGGCATGCAGAGCTATTTAGTCATGAGACACAGCAGCAGTTCCTGTAGTGTTTTTAGATGCAGTAGAATGCAGAGTGTAAAGTGACAGTAGTAGTCAGGCCTCTGACCATCtggtcattacacacacacagagacaaatatACCAGTACACTGTTTTTTGGAGTCTGAGTTTTGAAGTTATGACTGACTTCAGGATGACTAAGAGTGGCCATGTGTTCCTCAGTCCTGCGGTTATTACACGGGGCCAGAGGAGACGACACAGCGACACCTCGGACCTATTTGCAATGATCGAGAGGATGCAGggcagtagaatggacGAGCAGAGATgcatcctccctccacccctcaaaACAGAGGAGGACTATATCCCTTACCCCAGCGTTCACGAGGTCCTGGGCCGTAGGAGCCCCTTCCCCCTTATCCTGCTGCCTCAGTTTGGAGGCTACTGGATCGAGGGGACCAATCACAAATCCAGTGCCACACCTGGGTCTGAGCAGCAGCCATGTGCTTCCTCCCACATCAAGCTGGAGACCAACAGCATTGCCAAGATCTACAGGAAACAGTTCATGGGCAAGGAACACTTTAACTACTATTCCATGGACACTGCCCTGGGCCACCTGGTCTTCTCCATGAAGTATGACGTCATCGGGGACCAGGAGCACCTCCGCTTGCTGCTAAGGACCAAATTAAAAACCCACCATGATGTGATTCCtatctcctgcctgactgagttCCCCAACGTGGTCCAGATGGCCAAGCTGGTGTTTGAAGAGGTAAACGTGGACAGATTTTACCCAGTCCTCTACCCGAAGGCCTCAAGGCTCATTGTCACCTTTGATGAGCATGTCATCAGCAACAACTTCAAGTTTGGAGTCATTTATCAGAAGTTTGGCCAGACCACCGAGGAGGAGCTCTTTGGGAACAGCGACGAGAGTCCTGCTTTTGTGGAGTTCTTGGAGTTTCTGGGCGACAAGATTGAGCTCCATGACTTTAAAGGGTTCAGAGGGGGACTGGACGTCACCCATGGCCAAACAGGAACAGAGTCAGTCTACACTAACTTTCACAACAAGGAGATCATGTTCCATGTGTCCACCAAGCTGCCATACACAGAAGGAGACACCCAGCAGCTGCAGAGGAAAAGGCACATAGGCAACGACATCGTGGCCATCTTGTTTCAGGAGGAAAACACACCCTTTGTGCCAGACATGATAGCCTCCAACTTCCTGCATGCCTATGTGGTGGTGCAGGTGGAGAATGCCTGCTCAGACACCGTCACGTACAAGGTGTCTGTGACAGCGAGAGACGATGTGCCTTTCTTTGGACCCGCTCTACCGGACCCGGCCATCTTTAAAAAGGGACATGAGTTCCATGAGTTCCTGTTCACTAAGCTGATAAATGCGGAGTACGCCTGTTACAAGGCTGAGAAGTTTGCCAAGCTGGAGGAGCGCACACGGTCGGCCCTGTTGGAGACACTGTATGAGGAGCTACACATCAACAGCCAGTCCATGATGGGCCTGGGAGGGGACGAGGACAAACTGGAgaatgggggtggagggggggggggcttctttGAGTCCTTTAAGCGGGTGATCCGCAGCAGAAGCCAGTCTATGGATGCCATGGGCCTCAGTAACAAGAAGCCACACACTGTCTCCACTAGTCTCAGCGGCAGCTTTACCGAGACCCCCAAAACCCCAGGGATATCTCTGATCATTCCTGGGAAGAGCCCCACCAGGAAGAAGTCTGGGCCTTTTGGCACCCGACGGAGCAGTGCCATCGGGATCGAGAACATCCAGGAGGtgcaggagaggagTCGGGAAGTGTCCCCCAGCACACAGAGGACCCCAGACAGTGGACACATCTCCCAGGACCCCAAATCAGAGAACTCATCCAATCAGAGCTCACCAGAGATGCCCACCACAAGGACCAGTTCCGCCATCTGTTGCAGGGCTCCATACATCCCTGAGGCCCAGGACCTGTCCCGCTCCTCATCCAATGCTAGCAGCTTTGCCAGTGTGGTGGAGGAACACGATAATGTGTGCATCGAGGAATACAACACTGGACTGGAGAGTCTATGCTCTTTTGGAACACCATACAAGAAGGACTCATTTGCGTACGTCTCCTGGATAGAGGATAGTATGAGCAATACTAGTGCAACCAGCCAGGTCAGCTCTCCAGCACCTGCACTGCCCCATCAGACTGAGGGGGGCAAAAGGGTAGAGCTCAAAAGGGCAGAGAGCCGAGACAAGACAGAGAGGTCACAGGATAAGTCATCATCGaATTGTTAGCCTCTCCCCATTGATCACTACATGGGTGTCCATTAGCAGGTACCTGAAGTTTTCCAAcaTTCCCATAAGAGGCACCCCCTGCAGGAGATGAAGCAAGCACACGTGTTTTCCACCACAGACGCAGAGGAGGATCAGAGCTAGTTGCTGGGACAGGCAGACCTGGTGTAGGCTGGTCTAGTCTGTACAGCCAGGTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU707680 lncRNA upstream 88626 52958978 ~ 52976643 (+) True G622216
TU707639 lncRNA upstream 156455 52908609 ~ 52908814 (+) True G622182
TU707289 lncRNA upstream 281981 52773612 ~ 52783288 (+) True LOC110527982
TU707273 lncRNA upstream 336467 52728527 ~ 52728802 (+) True G621850
TU707245 lncRNA upstream 388647 52676253 ~ 52676622 (+) True G621822
TU707774 lncRNA downstream 15587 53104550 ~ 53116589 (+) True G622304
TU707786 lncRNA downstream 50590 53139553 ~ 53139766 (+) True G622316
TU708020 lncRNA downstream 59346 53148309 ~ 53148515 (+) True G622538
TU708197 lncRNA downstream 268428 53357391 ~ 53403946 (+) True G622641
TU708223 lncRNA downstream 316871 53405834 ~ 53411747 (+) True G622662
XM_036981846.1 mRNA upstream 162133 52882500 ~ 52903136 (+) False glut1a
NM_001124276.1 mRNA upstream 163980 52882528 ~ 52901289 (+) True glut1a
XM_021609651.2 mRNA upstream 281977 52737985 ~ 52783292 (+) False LOC110527982
XM_021609673.2 mRNA downstream 38458 53127421 ~ 53136965 (+) True lrig2
XM_021609676.2 mRNA downstream 61080 53150043 ~ 53291749 (+) False LOC110527986
XM_021609674.2 mRNA downstream 61082 53150045 ~ 53294684 (+) False LOC110527986
XM_021609675.2 mRNA downstream 61082 53150045 ~ 53294684 (+) True LOC110527986
XM_036983515.1 mRNA downstream 216508 53305471 ~ 53334514 (+) False LOC110527987
TU707108 other upstream 572029 52491168 ~ 52493240 (+) True G621695
TU707063 other upstream 673636 52391348 ~ 52391633 (+) True G621650
TU705038 other upstream 1991262 50960494 ~ 51074007 (+) True LOC110527970
TU703948 other upstream 2761037 50303430 ~ 50304232 (+) True G618712
TU703100 other upstream 3445101 49586870 ~ 49620168 (+) True tafa4b
TU708825 other downstream 664943 53753906 ~ 53754119 (+) True G623180
TU710327 other downstream 1734674 54823637 ~ 54824199 (+) True G624628
TU710684 other downstream 1958333 55047296 ~ 55052688 (+) False G624962
TU710686 other downstream 1958333 55047296 ~ 55052688 (+) True G624962
TU710695 other downstream 1981669 55070632 ~ 55072387 (+) True LOC110528007

Expression Profile