RNA id: NM_001160501.1


Basic Information

Item Value
RNA id NM_001160501.1
length 2848
RNA type mRNA
GC content 0.48
exon number 16
gene id pad
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53090437 ~ 53105864 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCAACGTAGCCTATCACCATGAATGTTTCCCAGGAGCAAGTTTCTTTGACCGGGCACCCTAATCTCTTTCAGCACTTTAATAGAATAGCCACCAACAAACCAGTAGACCAGATGTACCAACGGACATTTCGCCTCGACACTGGGAAAACTTTGAGGGCCCTTTACGTTGTCGGCACAGTGTTGAAAGTGAACCTGAACAGGAGTGCCCCTCCCAGCTCCACGTACTTCTCTGTGAAATGTAGCCCCAACGTGCAGTACAGGATTACCCCACCCCCAGCGAAGAGTGGACCAATCCCCACCCCTTTCAATGGGAATACAGTGCTTCTTCTCACCATGGACACTGCCAGCGAAGTGGAAAATGATAGCAAGCTATCGGTCATGTATTATGGAAAGAAGAAGGAGGTGTTGGGTAAAGCTGTCGTTCACCTCACTGCTTTTGAGATCTCCCTGGATGTTGATGCTGATCGAGATGGCCAGGTGGAGAGGAACAACCCCAACAAGGGATCCTGGATGTGGGGGCCTAATGGCCACGGTGCCATCCTACTGGTCAACTGTGACTCAGAACACACCTGTCGGAAGAGCCTGGACAGTGAGCATGCTGAGGTCACCAGAGTCTCAGATCTTAAAGATATGTCCCCCATGGTGCTGCGGACCAGTGGCCCTGCCAAGCTCCCAGAAGGCTACAAGCTGACCATGCACATCTCCCAGGGTGATGCAGAGTGTGTGAGGGTCTTCAGGTCCACAGCAGGCATGCACCAAACCCTGAaaaaaaacctgttttacaaGAGCTTTGTGAAGGACTACCCACTAGTGGTGGGAGGTGAGGATCTGTCCAAGGAGGTACCTTGCCTCTGGGGAAACGCTGAGATGAACTTTTACGTTGAAGGCCTGAGGTTCCCTGACAAAGACTTTGAGGGCCTAATCAGCATCAACCTCAGCATGCTGGAGCCGAGCTCTCAGGGCTTTCCTGAGACGCCCATCTTTACAGACAGGGTGGTGTTCCGAGTGGCTCCCTGGATCATGACACCCAACACACTCGACCCTGTAGAGGTTTTTGTCTGCAGCACAACTGATAATGACCCATTCTTAAAGAGAATGAGGAGGCTAGTGAAGAACAGTGGGTGCAAACTGAAGATTTGCCCTGAGGATATGAACAGAGGAGACCGTTGGATGCAGGATGAGATTGAGTTTGGCTACATTGATTCTCCTCACCAACGTTTCCCTGTTGTTCTGGACTCCCCCCGAGACGGAGACCTACAGGACTTCCCTTATGATGTGCTACTGGGCCAAGACTTTGGCTATGTGACTAGGACAGCATATGGCAAAGAAGTGAGCAGCCTGGACTCGTTTGGTAACCTGGAGGTTAGCCCTCCAGTCACTGTAAATGGAAAGAACTACCCTCTGGGTAGGATCATCATTGGAGTGGCCTTCCCTACGGCTACTAAGGGCCGCAACATGACCAAAGTAGTGCAAGACTTCCTGTGGGCCCAGAAAGTCCAGGAGCCCATTGCGTTATTCTCTGATTGGCTCCTGGTTGGGCATGTGGATGAATTCATGACCTTCGTCCCAGCTCCGGACAAAAAGGGATTCCGGCTTCTGCTCGCCAGCCCCGATGCAAGCTACAAACTATTCAGGGGCTTACAGAATGGCGGGCATGGACAAGCCAAAatgtttgatgGTCTTGGAGCAGAAGAGATTACAGTAGATGAGATTTTGAGTGACGAGAAACTCAAGGCAGAAAACAACTATGTCCAGagctgtatagactgGAACAGGGATGTCCTGAAGAGGGAGCTGGGTCTAGACGACGATGACATCATTGACCTGCCCATCCTTTTCCATGTGATGGAGAACAGGGCAGTGGCCTACTACCCAGACATGGTAAACATGATTGTGTTGGGAAAGAACCTGGGCATCCCTAAGCCATTTGGGCCCAAGGTGGATGGCCGCTGTGCCCTGGAGGCAGAGATGACCTCCCTCATGGAGGGGCTGGGACTCAGCTGCACATACATTGATGACTTTGCCTCCTACCACAAACTGCTGGGAGAGGTTCACTGTGGCTCCAATGTCCGCAGGGAACCGTTCTCCTTCAAGTGGTGGAACCTGGAGATGTGAAGGATTTGGGGGGAAGGAACGGTTGTAGTTAGAAAGAGGGAATCATGCTTGAAATAAACAGCAGTAACAATCACCAGCAGCAGTTGCCTTCAAACAACCACAGTAGTCCTCCAATGGTATTACACCTTtgtctttattaaacatattTGGCTTAATTTACAAAAGGGTGAAAAGCAATATTTACAAACAAGACTTTGGAACTTGAACAAGGGTTTAAGCGGACTGTCAACGAGAAGAGCAATACAATCACCTGAATCAAGCACATTGCAAATTAGATCTGTTGTTTGAATTGGCTGGGGGCTCAATCCAAATGTCTTGCATGTACAAACAGAACAACAGGACCACAGAGAAATGTGCAAATATAATCTGGAGCCACTGGAGGTAATCCAACTACTGGTATTCAAGAATTTTACAAAGACCAGTGAGACCTTTGtgataaaagtttttttttaatatattttgagTTTGTGTGCAATACACACTGACTCCAAAGGCTCTGTTAACATGATGAAACTTTATCATCTTTCCAATGACTTGTGGTGTTTTTATGATTAAATGCAAGACTAGCTGTATTTTGGTGTAGTGTTACTTAGACAGGGATCCTTAAGATTCAACTAAAAGATTTCAAAAATATTGTATGAAAACCGAATGTACTAATGTCACAACAGAGAAAGCACAACTAAATTCCACATTGGCTCTTCATTTCATTGAAATAAAAAGTAATGAAAACCA

Function

GO:

id name namespace
GO:0018101 protein citrullination biological_process
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004668 protein-arginine deiminase activity molecular_function

KEGG:

id description
K01481 E3.5.3.15; protein-arginine deiminase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU707824 lncRNA downstream 187305 52898545 ~ 52903132 (-) True G622347
TU707853 lncRNA downstream 208826 52878752 ~ 52881611 (-) True G622374
TU707845 lncRNA downstream 217706 52869067 ~ 52872731 (-) True G622366
TU707843 lncRNA downstream 228981 52861239 ~ 52861456 (-) True G622364
TU707841 lncRNA downstream 230276 52859951 ~ 52860161 (-) True G622362
TU707994 lncRNA upstream 17401 53123265 ~ 53123699 (-) True G622512
TU707996 lncRNA upstream 19295 53125159 ~ 53125391 (-) True G622514
TU707999 lncRNA upstream 28975 53134839 ~ 53136930 (-) True G622517
TU708010 lncRNA upstream 34208 53140072 ~ 53140363 (-) True G622528
TU708016 lncRNA upstream 39552 53145416 ~ 53145784 (-) True G622534
XM_021609659.2 mRNA downstream 248668 52785667 ~ 52841769 (-) True LOC110527983
XM_021609654.2 mRNA downstream 263900 52785667 ~ 52826537 (-) False LOC110527983
XM_021609656.2 mRNA downstream 263900 52785667 ~ 52826537 (-) False LOC110527983
XM_021609657.2 mRNA downstream 263900 52785667 ~ 52826537 (-) False LOC110527983
XM_021609658.2 mRNA downstream 263900 52785667 ~ 52826537 (-) False LOC110527983
XR_005052607.1 mRNA upstream 263770 53369634 ~ 53373429 (-) False LOC118965299
XR_005052608.1 mRNA upstream 263770 53369634 ~ 53373429 (-) False LOC118965299
XM_021609701.2 mRNA upstream 274637 53380501 ~ 53400793 (-) False LOC101268938
XM_021609702.2 mRNA upstream 274637 53380501 ~ 53400793 (-) True LOC101268938
XM_021609704.2 mRNA upstream 324083 53429947 ~ 53486228 (-) True LOC110527988
TU705034 other downstream 2131897 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 2784281 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 3154156 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 3793189 49295255 ~ 49297248 (-) True mustn1b
TU702811 other downstream 3894467 49195604 ~ 49195970 (-) True G617632
TU708601 other upstream 199672 53305536 ~ 53322831 (-) True G622985
TU711185 other upstream 1966615 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 2058628 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 2327592 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 3585459 56691323 ~ 56696091 (-) True G627254

Expression Profile