RNA id: XM_021609673.2


Basic Information

Item Value
RNA id XM_021609673.2
length 5669
RNA type mRNA
GC content 0.49
exon number 17
gene id lrig2
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53127421 ~ 53136965 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaTAGTtaggactttgtggctgtggtaactagtgacgacggAACTCAAGGCGCCTTTGTTGTTCCTTCAATTAAACAGAAGTCGGGGAGATCATGTCTACTTGGTAGCTAGCGATTTATTGTGGTAAATTAGCTAGAACACTATGGACGATCCAAATACGTTTGATACGAAGGAAAATTAAAACTTGGTCCGTGGAAACATCGACGGTCTTGGTTACTTGACGAAAGCTAGCTAGGAGTTGTGTTGATATTGGAAGCGGAAGGAAATTCGAAGGGGAAAGAAGGGAAAAATCGGTGGTAGGACGTGGGATGCATTGCGCAAGTTGGAAGAAAGATTTTCCCGATGTTATGCGACAAATGGGTTTCCCAAGTCGTGAAAGCGGGGGGTTATTTTATTAATATCTAGTTATACGAATCGGTTGGTATTGTTGTTGAGACATATTTCATAATTGTCAGAAGCGAGCCACGTaaagtagctagctacagtactgtaggcattgatagttagctagctagacttTTAAAATGGCGGAAGCCTGGCCCAGACCCCCGGCCCTCTTTTTGTTGTTGAGTTTGAGTGCCTGCTGGGAAGTGGATTCCTGCCCTGCTCCGTGCTCTTGTATGAGGGGATCAGACGAAATCCAAATCCTGGATTGCAATAGGAAAAGGTTGTCCTCGGCACCTCTGGATCCACCTCACGGGATTACTCATCTCACTATGAATCACAATGAtctgacaactgtgccatacctTGGAGAAGTTACCTCAAACATCACAACACTCTTATTGGTCCACAACCTGATCTCAGAACTGTGGATGCATCAGCTGCAGCTGTACATCTCCCTGGAGACACTTGATCTGTCATCTAACTCGATCTCGGAGATCAAGGCTGGAGCCTTCCCACCAATGCAGCTGAAATACTTGAATTTAAGCAATAACAAGATCAGTGTCCTTGAACCTGGCTGCTTTGACAACATCTCTAGTTCCCTGCTGGTCCTGAAGCTGAACAGGAACAGAATAACACTGCTGCCATGCAAAGTATTCAGGCTTCCCCAGCTGCAGTTTCTGGAATTAAAGCGCAACAAGATCAAGATAGTGGACAGTCTGACCTTCAAAGGGATGGACTTACTGAAATCACTGAAGATGCAGCGGAATGGCATAACTAAGCTGATGGATGGTGCTTTCTTTGGGCTCAACAACATGGAGGAGCTAGAGCTGGAGCACAACAACTTGACGGAGGTCAACAAAGGCTGGCTGTATGGCCTGCACATGCTGCGTGTGCTGCGGTTCAGCCAGAACGCCATCGGCATCATCCGACCAGACGCCTGGGAGTTCTGCCAAAAGCTGGAGGAACTAGATCTGTCCTTCAACCACCTGACCCGGCTGGAGGAGACAGCGTTCAGTGGACTGGGTCTTCTGGAGAACCTGAATCTGGGAGATAACTCGGTCAGCCACCTGGGAGAGGGAGTCTTCAGCAGCCTGGCCAATCTGCGCTCACTAGACATACGGGATAATGAGATCTCTTGGGCCATTGAGGACTCCATTGGTGTGTTTGTTGGAATGAAGAAGCTGAACACTTTGATTCTCCAGCAGAACAAGATCAAATCTATCACAAAGAAGGCCTTTGAGGGTCTGGAGGCGCTTGAGCACCTAGACCTGAGCAAGAATGGGATCATGTCCATCCATCCTGATTCTTTGTCTCACATGAAGCTGAAAGTGTTTGTCCTGAACACTAGCAGCCTGCTTTGTGACTGCCAGCTGCAGTGGCTGGGCCCGTGGTTGACTGACAACCACTTCCTGCAGTCTGTCTCAGTCATGTGTGCCCACCCTGCCAGCCTGCTGGGCCGCAACGTTGTGTCTGTCAGCCTGGAGGAGCTCGTCTGTGATGACTTTCCAAAACCCAGGATCACAGAGCACCCTGAGACTGCCACCGCCCTGCGTGGGACCAATGTGACTCTGAGCTGCCTGGCGTCCAGCAGCAGTGACTCCCCCATGACCACGGCCTGGAGGAAAGACGGGGAGGTGCTGTACGATGCAGAGGTGCAGAACTACGCCCGCTACCAGGAGGGAGAGTTGGTCTACACCACCGTGCTGCACCTGCTCAACGTCAACTTCACAGACGAGGGACGCTACCAGTGTGTAGTTTCCAACCATTTTGGTGCAAACTACTCCAACCGGGCCAAGCTCACAGTCAATGAGCTACCATCCTTCCTGAAGACTCCCATGGATCTGACCATCCGTACAGGCACCATGGCCAGACTGGAATGTGCCGCCGAGGGTCACCCCTCACCCCAGATTGCCTGGCAGAAAGACGGGGGCACAGACTTCCCTGCTGCCCGGGAGAGAAGGATGCACGTTATGCCTGACGATGACATCTTCTTCATTGCCAATGTAAAGACGGAGGACATGGGTGTGTACAGCTGCACAGCCCAGAATGTTGCAGGAAGCCTGTCAGCCAACGCTACACTCACTGTGCTAGAAACGCCGTCCTTAATGCGTCCCATGGAGGACAGGACAGTAGCTCGTGGGGAGACGGCGGTGCTCCAGTGTATCGCAGGGGGCAGCCCTGCGCCCCGTCTCAACTGGACCAAGGACGATGGGCCCCTGGTCCTTACCGAGCGCCACTTCTTTGCTGCTGCCAACCAGTTGCTCATCATTGTGGACACGGGGCCGGCGGACACCGGGAAGTACACATGTATCATGTCCAACACGCTGGGCACGGAGCGCGGACACATCTACCTCAGCGTGTCGCCATCGCCCAACTGTGACACGGCCGGCGGCTACGACCAGGACGGCTGGACCACAGTGGGCATCGTGGTGATCGTAGTGGTCTGCTGCGTGGTGGGCACCTCGCTGGTCTGGGTCATCGTCATCTACCACATGCGTCGGAAGAGTGAGGACTACAGCATCACCAACACAGATGAGCTGAACCTGCCGGCAGACATCCCCAGCTACCTGTCCTCTCAACGCACACTGTCAGAGCCTCAAGAGGGATACAGCAACTCTGAAGCAGGGAGCCACCAACAGCTCATGCCACCACTGTCCAACGGCTACGTCCACAAGGGCACTGACGGTGTGTGTTATGGTGACACAGGCAGCGAGGTGGACACTGAGGCCAATGGGATGCTACACTGCCGCGTGGGCTCTCTGTTTACGGGACGGAGCAGCTTCCATCCTGGGGAGCCTCGTGAGGGACTGGCTGGGGTGCCTACAGGTGGTGCAGGGCCGCTGGTCATCTGCTCGGACTGCTACGACAACGCTAACATCTACTCTCGAACCCGGGAGTACTGCCCCTATGCCTACCTGGCTGAGGATGACTCCCTTGACAAGAGTCTGTCAGGCATCATGGCCCACTTTCCCAAGGAGTCCTACAGGGAGCAGCACACCCAGCATGAGGACACAGCCCTGGAGAGCCTCATCAACAACCAGGACTCCTCAGTCTTTCTCACCAGCCACGACCTCACCAAGAGGCTGAGCACAGCCCTCAGCCCCCCAGAACAACACTACAGCACCGATGTTCCCTCCAGGTTGTTTTGGGGCAAAGGAGAGGACCTGTCTACAGTGCCCCAACCAGGTCTGTCTCAGCAGCCAGTGAATGTGCACAAGACTCCCCTCGTGTCCTCAGTTGGcatgggtggagaggagaggagtggaaagggGGATGCCTCCCTTTCCCAGAGCACACAGGACCACATAAGTGCCTCTTATAGGACTAAGCCTCAAGAGCACACCCACTCCCCCACATAAAGCCTCTTCCCTATACACCCAGTCATCCTCTCCCACTTTGTCCTCTGCTCCAGCCACTACCTCCAAAGAGACGTATCACTTTCTGCCAAAAATGCTTTCTTGTATGTTTACATTACTTTCAATCATGCAGAGACAATTTGTTCCTATGAATTTGAAAAGGGACTGAACAGGtgactaaccccccccccccagattccctccacctccctttccTCCCACACCCTCTAGAGGAAACTGAATGTATCCATCAAAGAGCCATTTTGGATGCTTCCTTTTTGATTTTTAAGACATCAGAAGTTTGAAACTGTCCTCTGTACAGAAGTAGGGCATGGCAGCAGTGTTGGTAGATCTCCTGAGCGTTGTGCTTTACATTTGCAGTTAGTTGCCACATTATTTCTACAGTCACTTGTTGGAGAAGCCTTTATGATTTAAGGTACAAGTCCAGGACCACCTCTGCTCTCTCGTCCAGGACTAGAGGGGCCAGAGACCCCAGTCGTTGCTTGTTCAGCAGTGAGTGGTACGTACCTAACAGGGCCTATAGGTCAAGAAGGACCCTCGCTGAATGGATCCCACCTCTAGCCATCTGTATTGACTAACAGTCTGCTATTATACAAACTCAGAGACTGACACCAGACATGGTGTGTCTATATGCAATATTATTTTCCCCTATTCTCATCAATGTATCTTAAGCTCAGATTGTTTTCCCGTGTGTCAAATGGAGACAGTCATActaacaatttttattttttatttttaatgaaaGCGCGCTGTCAAAGCAAAGAAAATATTCGGTATTGCACATTTGACAATCATGGTTTCGGTTGCCCCTTTGTGTTGGTTCTATCAGAGGGTTTTCAACAGGCATTCTGAGTAACGCTCCATCAGGTATGGTTTCTCGTCACCTATATGCACTGATCATATTTTCCTAAAAATATTATTTTACAGGCACTTACCTCTCATGGTGGTATGTTTTATTATGCAGTGTGCATGCCATTTTAGATTTAGACCCCCAATTTCATCAACCCTAGATACTGACCAGATTTTACCTTTGGACTGTGAAGAATGTATTATATGTATGTGTACATATGGTCATTAATCTATTCAATATTATGTCCTTCAAGACCTAAGCAGAATCATTTTATTCCTAAACTGCAGTAagtttgtattttatttgttgcATGTATATGTGTCTGTCAGTATTATTTTTGTAGTTACTCCTGGGTGAATCCTAACTTGGTATGGGAGGTTTCCACAACAATGCTGAAAGATTTGGCCATAAATGTTGGTACTAATTTCAACAAGCTTAAACAAAGGCTTTTAATACTAGTTCTCTTTATATCAAGTCTACCTGTTTCCTTTGCTCAAATAAAATCACTGAATCATTTTGGCAATGGAGCATGGCTACTTCAGAATAAAATGTAGGCTATAAAAACACATTGCGTAAACATAAGTGTTTGTCACATGCTCTTTATTTAACTGTTACATAATGCATTCCCGCTTGAATCAAAACTTTTAGACATTCCATGGGGCATTGCTTGATAAAGCATCTGGTACAAAACCATTCCAAGCCCATGCCACTGCATTCAACATTAGCTTAAATAGGGGTCACAGATTACGCTCTCTGCTGGGTAATTAAGGCAGGTAGTTATTGTAGCTGATCGCTTAACCATCACACATTTATGACTCACTTTTTACCAACACATCTTAGTGTCTGCTTTGTGTTGCTTTCAGAACATCTTGTTTTTGTCATTCTACCAAAGTTCAGCAGTAATGCTCTGGCAATATTTACAATGCTGCTTGTTTTCTGACTTGTTGAAGTTTTGCATCTTGACTTACTTGTACATTCTGTAAAGCATGTATAAAGAACATTTTGTTTCTTGAAATGTAGCTGTAATTAAAATAATCACATTCTGATAATTCTGA

Function

GO: NA

KEGG:

id description
K24609 LRIG2; leucine-rich repeats and immunoglobulin-like domains protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU707774 lncRNA upstream 10832 53104550 ~ 53116589 (+) True G622304
TU707680 lncRNA upstream 150778 52958978 ~ 52976643 (+) True G622216
TU707639 lncRNA upstream 218607 52908609 ~ 52908814 (+) True G622182
TU707289 lncRNA upstream 344133 52773612 ~ 52783288 (+) True LOC110527982
TU707273 lncRNA upstream 398619 52728527 ~ 52728802 (+) True G621850
TU707786 lncRNA downstream 2588 53139553 ~ 53139766 (+) True G622316
TU708020 lncRNA downstream 11344 53148309 ~ 53148515 (+) True G622538
TU708197 lncRNA downstream 220426 53357391 ~ 53403946 (+) True G622641
TU708223 lncRNA downstream 268869 53405834 ~ 53411747 (+) True G622662
TU708231 lncRNA downstream 277545 53414510 ~ 53414798 (+) True G622669
XM_036983493.1 mRNA upstream 36367 52922877 ~ 53091054 (+) False LOC110527984
XM_036983495.1 mRNA upstream 36367 53049723 ~ 53091054 (+) False LOC110527984
XM_021609666.2 mRNA upstream 36367 53065267 ~ 53091054 (+) False LOC110527984
XR_005052602.1 mRNA upstream 36367 53065268 ~ 53091054 (+) False LOC110527984
XM_021609665.2 mRNA upstream 36367 53065269 ~ 53091054 (+) False LOC110527984
XM_021609676.2 mRNA downstream 13078 53150043 ~ 53291749 (+) False LOC110527986
XM_021609674.2 mRNA downstream 13080 53150045 ~ 53294684 (+) False LOC110527986
XM_021609675.2 mRNA downstream 13080 53150045 ~ 53294684 (+) True LOC110527986
XM_036983515.1 mRNA downstream 168506 53305471 ~ 53334514 (+) False LOC110527987
XM_036983519.1 mRNA downstream 168507 53305472 ~ 53311558 (+) False LOC110527987
TU707108 other upstream 634181 52491168 ~ 52493240 (+) True G621695
TU707063 other upstream 735788 52391348 ~ 52391633 (+) True G621650
TU705038 other upstream 2053414 50960494 ~ 51074007 (+) True LOC110527970
TU703948 other upstream 2823189 50303430 ~ 50304232 (+) True G618712
TU703100 other upstream 3507253 49586870 ~ 49620168 (+) True tafa4b
TU708825 other downstream 616941 53753906 ~ 53754119 (+) True G623180
TU710327 other downstream 1686672 54823637 ~ 54824199 (+) True G624628
TU710684 other downstream 1910331 55047296 ~ 55052688 (+) False G624962
TU710686 other downstream 1910331 55047296 ~ 55052688 (+) True G624962
TU710695 other downstream 1933667 55070632 ~ 55072387 (+) True LOC110528007

Expression Profile