RNA id: XM_021609675.2


Basic Information

Item Value
RNA id XM_021609675.2
length 7476
RNA type mRNA
GC content 0.49
exon number 21
gene id LOC110527986
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53150043 ~ 53294684 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATACACCGAAGGATGGAGCCTGCCGAAAAGGTTGAGTTGAACGACGCGCAGTGACATCTGGGCGTTTCGAGATTCGCGCATCTCGCTTGGTGCTACCGCGGTGCCAGGTGTGTTTAAACCTGTGGCGACGGATGGGGTCGCGGTTGTCACTACATCAAAATGCGTAGGATCCGAACTACCACCTGGAACGATAATAAATGACCATTAAGTGAATGATGCGATAGAAAACGGCTCGTGTCGTCGTTATGTTAGTCTAGTCACAGGTATAAAGGCACTCTCGTTGATGCACTGTACGGTTTACGATTCTAAATCTCCGAGCAGATTTGTCTCTCACGCAGTATGGTGAGGTGAGTGGATACCTTGTTTTGACAATTTACAGCCAAAGGTTTAGGAAAAaagaaaaaacaacatttgatagGGTGATGGGGAGGCTAACACGCATTTATGCATTCATTTAGACATTGTATTGCTTTCTTGTTTATTGTTTTACGCACATAGAACATTCGGAGTTTTGCAACGGACATACTTTCAGTAGCACAGCCAGCTACTGGGGTGCTCGTACTGTTTTTTATTGACAGTGGTGCTACTCCAGGATTACTGTGGTTTATTCCTGGACAATATTACATTTATTTACACATTACCGGGAATACCTCATCCATGACGCAGGCTGGCTCCCAAAAGTGAATGATCAATTATAACAGAGACATGAAACTCCGATCAGAACCAGGGAATAACTCGAGATTAGAAGTCTTTGTTCGACCATATTTGCTCCTGCTTTAGTGCTTGAGAAACAAAGCAAAACCAAACAGACAATTTCAGATCAGTGACAGACAACATCAAAAGGATACAGTATGTCCAGAACGCTGAAAAAGAAGAAACATTGGTCCAGCAAGGTGCAGGAGTGTGCCGTGTCATGGGGAAGCCTCGGAGAATTCGGCAAtgtggtggaggtgctggggggtGCCGAACACGGAGAGTTCCCTTACTTGGGCCAGATGAAGTTGGATTTGATGGTGTGCCACGTCGGGAGAATGCCCTATTTTGGGGACGTTTTGTTGGAGATCAACGGAACCCCCATCAGTGGACTTACAAACCGCGACACGCATGCAGTCATTCGCCACTTTCGGGAGCCCATTCGTTTGAAGACTGTCAAACCAGGGAAGGTTCTGAACACGGACCTGCGCCACTACCTCAGCCTGCAGTTCCAGAAGGGCTCGTTGGACCACAAGCTGCAGCAGGTCATCCGGGACAACCTCTACCTGCGCACCATCCCCTGCACCACACGGCTGCCAAGAGAAGGGGAGGTGCCGGGGGTGGACTACAACTTCATCAGCGTGGGAGACTTCCGTATCCTGGAGGAGAGTGGCCTTCTGCTGGAGAGTGGAACCTACGATGgTAACTACTATGGGACCCCCAAGCCCCCAGCAGAGCCCACCCTGGTGCAGCCTGACCTGGTGGATCAGGTGCTGTTTGATGAGGACTATGACAACGAGGTCCAGCGTAAACGGACCACCTCCGTCAGCAAAATGGACAGGAAGGACAGTGTGGTCCCTGAGGAGGAGGACGATGATGAGAGGCCACCTCTGTCCAATGGCCTCCCAGagaATAAAGAGGGGGCATCATGGAGGAAGGCGGTGCCCAGCTACACCCAGTCCAGCAGTGCAATGGACTTCCGTACGTGGAGCTCTCTGCCCCGCGACGACAGCCTGGAACCACTGCCTCTCAACTGGGAGATGGCCTACACCGAGACGGGCATGGTCTACTTCATAGATCACAATAGCAAGACTACCACCTGGCTGGACCCCCGCCTAGCCAAGAAAGCCAAGCCCCCGGAGAAGTGTGAGGATGGAGAGCTTCCGTATGGCTGGGAGGAAATAGAGGACCCACAGTATGGAACATATTATGTAGAtcaCATCAACCAGAGAACCCAGTTTGAGAACCCAGTCCTGGAGGCCAAGAGGAAGCTGAGCCAGGAGACTACTGCCACTATCCAGCAGGGGGCACCCCCTCCCCCAGGTGAGCAGGTTGCACCAGGCTTCACCCCAGACCCATCCCAGCTGCAGGGAGAGATGTTCCACACTGCTCTGAGGAAGAGCTCCCAGGGCTTTGGCTTCACCATCATTGGGGGCGACCGCCATGATGAGTTCCTGCAGGTGAAGAATGTCCTCAGCGACGGCCCTGCCGCCAATGATAAAAAGATTGCCTCCGGTGATGTGATCGTGGAGATTAACGGGACATGTGTGCTGGGGAAGACCCACCCTGAAGTGGTGCAGATGTTCCAGTCCATCCCAGTGAGTCAGTATGTTGACATGGTGCTGTGCCGCGGCTACCCGCTGCCCCCAGACGTGGAGCCAGACAGTGAGGACCCACCTCCCCCATCTTCTCAGCCCCTGCAAGGGGGCGAGGTGGTGACGGCCGTGCCCCTCATCAATGGCCAGCCCCTGCTGGTGAAGGGTGACGTGCTGCACGGCTCCTCCCAGGAGCTGCACTACGTCACGACCGACGCCAGCGGGCGGCCCGTGGTGGCTGCCCTGCCCAACGGGAGGCGTCCTGAGCAGGGGGGAACAGGCCTGTTGCAGCCCGAACTTGTGAGTGTGCACCTGGTGAAGGGCCCAGGCGGGTTTGGGTTTGCCATCGCAGACTGCCCCCTGGGCCAGAAGGTGAAGATGATCCTGGATGCCCAGTGGTGCCGAGGCCTGCTGAAGGGAGACGTGATCAAGGAGATCAACCGTCAGAACGTCCAGACACTAAGCCACGCCCAGGTGGTGGACATCCTCAAAGACCTGCAGGTGGGGAGCGAGGTCAACGTGCTGGTGCTCAGAGGAGGTCAGACATCTCCTGTGAAGAGCCTGAAACCTAGGCAGGAGATGACAGCTAGCACAGAGACTCTGGACTGTGTTACAGACTCTGTCTCCCAGGCCCTCCCATACCATTCCAACACCTCAACCCTGCGCAACGACTCACCCAAACGGGACGCCACAGAGATGTACCTCAAGTCCAAGGCCCTGCTGGAGAGCAAGCAGCCTCACACCAAGGACTTGGATGTGTTCATCAAGAGGGACCAGGAGACTGGCTTTGGCTTCCGTGTTCTGGGAGGAGAAGGTCCAGAGCAGCCAGTGTATATTGGTGCCATCGTGCCCCTGGGTGCAGCTGAGAAGGATGGGCGTCTGAGGGCTGGTGATGAGCTCATAGGCATTGATGGAATCATGGTCAAGGGCCGTTCCCACAAGCAGGTTCTGGACCTGATGACCAACGCTGCCCGAAACGGTCAGGTCATGTTGACTGTGCGTAGGAAAGTCATCTACAGAGATATGACTGAGGAGGAGGCAGGGCTCCACATGGCTCCAGTGTTGGTGAACGGCTCCCCCAGACTCCCTCGTATCCAGATGCCCAGCGTGCTGGACCACGAGTCCTTCGACATCACCCTCCACCGCAAGGACAGCGAGGGCTTCGGCTTCGTCATCCTCACCTCTAAGAGCAAGCCCCCGCTTGGAGtGATTCCTCATAAGATTGGACGCATCATCGAAGGCAGCCCCACTGACCGCTGTGGCCTGCTGAACGTGGGTGACCGCATCTCAGCGGTCAACGGGCGGTCCATCGTGGGGCTGTCTCACAATGACATTGTTCAGCTAATCAAGGATGCTGGCAATGCTGTCACCCTCACCGTGGTCCCGGAGGATGAATACAAGGGTCCTCCCTCTGGAGCCAGCTCAGCCAAGCAGAGCCCTGCCCTTCAGCACAGAGCTATGGGTCAGAGGTCAGCCATGCAGGAAGAGCGTTATAACCTAGATCTGgaggagaaaagggagggagTCACCTGGGCTGACTACAAAACTCTGCCTCTGAGCGAACAGGGAACAATGTGTGTTACAGGCCCCAAACAGGGCTGCATCACGGTGGAGCTGGACCGGGGGTCCCGGGGTTTTGGcttcagtctgaggggagggactgAGTACAACATGGGCCTGTACATCCTGAGACTGGCTGAGGAGGGGCCTGCTCTGCTGGACGGGAGAATCCACGTGGGAGATCAGATAGTGGAGATCAATGGAGAGCCGACCCAGGGCATCACCCATACCCGCGCCATCGAGCTGATCCAGGCTGGGGGCAGCAAAGTGCAGCTCCTGTTAAGGCCAGGGCAGGGTCTGGTACAAGACAACAGTAAGTTGGATCCAACCATCACTTCACCCACACGTTTTCCTAGAGAGGCTCTTGTCTCCGAAAcgtcactcctctcttctccgtTCTCCAcctgcagctccgtctcaggttcctACCCTTTCATCAGTGAGACCCCTGACTGGAACTTCCTGTCTCCCCAAACACCCCATCCCCAGACCAGCAGGGGCACTGGCTCAGTGAAGTGGAATGGGGAgcgggcagacaggcaggcagacaggctctCTCCCATCACCCCTGAGCAGATCAACCTCTATAAGGTCAAACCAGGCCATACCAGGTCTAAAGGCTCCAAGGAGTCCAGCAGCCCCAAAAAAACAGGTGAAACATTCAAAGAGCGCTCACAGAGCCCCAAAAAGTCTGAGAAGAAGACCCAGGAAGCAGTGACAAGCAAGGGCAGGAATGCTTACCCTCAGAAAGGAAGTCGGTCACCCAGCCCCAGAAAGTTCCCTCGAGAAGGACACGAAGTCTTGAGCCAGCCACACATAAAGAAACAGCAGGTACAGCAGAGCACATCAAATGACCTTTTCAGCAAGGAGTCCTTTGAGAAAAACAAAAACTACAAAAGGGGGGATTCAAAGGGCAGGAAAAGcatgcaggagagagaggggggagggggaactaCCAAGGCTGCCCATGAGCAGGCTAGTATTCGAAGGAGGGTTGGGACAGAGGCAGGACATCACAGGCCAACTCCTCAGGAGGGCAAGGAGACAGGGGCAAGGAGAGATATTCTGAGAGACGGGGAAAGGGAAAAACACAAAGAGGAGAAAAGGAAAAAAGACACAGGGAATTCCTCAAAAGAGGAAAAGACTATAACAGATTCTGGAGCCTATACAACAGAGGAAAGCAGTAGAAAATACTCTGTGTTATCCCcaatagaggagaggatcagaaaAGACACAGGGGCCTCCTCAAATGACGTTCAGGAGGATGCTCAGAGCCAAAAGGGTCATATTAGCCCTGGACCCTGGAAAGTGCCCAGCTCAGCCAGAATCCTCTCCCAGGCTGAGGTGCTGCGTGACCTCACTTGCTGATACAGTATGGATAACACTGTGTTGACACATAATCACACAGACTTGAGCTGTACCTCAACATGCTGTATATTGTTGGTCAGTTTTTTTCTCAGATGAGAGGGATGGACGAGGAATCACAACAAATTGGCCATGTGTCATGTCCAGCTGTGTCCCTTAAGAGGTATTTTTTAACCTCTATTCGCCTTTGACATTGTGAATGGCATGTATCGCCAACGCTCTCAGCTCACTTCCTCTCTTCCTGCCTTGTGTGCTGCTTCAGACATCTTTGATCTGGGCTGTATGCTTGGCATGTTCAGGGCCCTGCCAGTCAGTGACACTTCAGAAATGTGATCATGTGCCAATTCTGGGACGTCTTGTTGAATGAATAATAACCATGCCTCACCCATCACAATGCAATTAGTATCCCATATGCATCCAAGGTGAAAGGTGTCTAACTCAAAGGGTGGCTGTCAGTAAGAGTTGTATTTTCATGTTGGATATCTACAGCAAGGGCCTTGGGATTGGTCATTTGACATGGCACTCTTTTTCCAGGGGATTTGCTCAACTGCATGCAGTCCATATGTTTGTTTTATTGCACGCCTTTTCCACTCCACTGAGGATGATCCTTTCTCCTGATGTGCAAATACCGTTCTGACCTGAACACCATGTAGAGATTTCAGACTTTATTCAGAAAGCATTAGCTTTACCAAGGATTCTAGACTGTTCTAAGACATGATTCCTGAATACAAAATATATCATTACAAAAGACCAGAAACTTGTGGTTTGAGATATTGTTCATCATGTGTATGATATTGTTTACCATGTTTATGATAATCTATGTGTAACTTAttgaaattatatatatatataccgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacacacactatatgtagCCATACTGAGCCATTCCATGTTTTGATATAGAGTACAAAGGTTCATCCTGAATCATCTTGCACCATCCTTTCTAATGCATTTTACTGATAGCAGTTGCCATGGGTCTTCATCGTTcatgaaatatatacagtacagtagctacTACATGCAGATTGCCATATGTGTCTGAAATTGCCATTGCTCCAAATGTGTTATATTGTggaaatactgtatatgtttaCCAATATGAATTCCATTGCACTACACCTTTACTTGTAGGATTACAATATGACCAATATTGTTTATTTTCTGAGAATCTTGATTCCTTTGAAAATAACCATTTGGGATGCCTAACATTGTTGCCATTTTAATACAGTGCCAATAGCACCGATTTTGATAAATAACTACGTTTTACTGTTGATGGCCAATATCGTAATTTCAAATGGTTTTTCTGCAATTAATTTTGGCTTGTGATTGTGTTAAACACTAAAGTAGACTAAGTATGGCTGCATTCAGACAGAAATGTAATGTCTGTCCAAAACTGATTGAGTATATTGTTTTTGTATGGGGGTCAAACATTGTCGGACAACGGAGTGGACATAAGTTGTCAAAAGTTGTCCGTCCAGGCGCTAAAGCGGTTTGGATCAAGACGTGTTTATAACTGAGCTCAGGGAATGCACCAAAGTAGCAAATGATGACGTGTGATAAAGTTAAGATTTCACAGAGCCAGAATTGACCGGATATCAACAGTGCTCTGAATTTGGTCCAGTGTGTGATGATGAGAGTGGAGTTTTCTATATAGTAAGCACAGACTCTGAAGGTCCAGGCCACTGATAGGACATACTGTGTACATTATGAGCCAACCAGTGGAGTTTTCTGAGCAATAGATTGTTGGTTGAATGAATGAGCACGCTCAACCTCCAGTCTTTCTTGAAGCTGCTAGTAGCAAGTACATGTTACAACCCAGAAATAGTTCATTAATGACTTGTTGTACTTACGTATTCTGCACCGTTGTATGCCCCCTCATATTCATTTATACCCAGTCTCATGTCTTGTCTCTGTATCATATTGTGGCCTTGCATTGCTTTAATAGTAAAAGGAATCCTTGTTGTCTTTCTACATTATGTGGGTACGGTAGTTGTAAATGTTTATATATTGTACAGCACCTTTATAAATATTCGCTGAGTGCTTTTCGGGAAGAAAATAGAGATATATAAATTGCTCCATTATTTTTTTATGTAAGAAAAATAAGATTCTAAGTAGTTTAAAAGAAAATGACCTTGACATGGTGTTCTGTTTATGCActgaaaaaataaagttttactGAAAACA

Function

GO: NA

KEGG:

id description
K06112 MAGI3; membrane-associated guanylate kinase-related

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU708020 lncRNA upstream 1530 53148309 ~ 53148515 (+) True G622538
TU707786 lncRNA upstream 10279 53139553 ~ 53139766 (+) True G622316
TU707774 lncRNA upstream 33456 53104550 ~ 53116589 (+) True G622304
TU707680 lncRNA upstream 173402 52958978 ~ 52976643 (+) True G622216
TU707639 lncRNA upstream 241231 52908609 ~ 52908814 (+) True G622182
TU708197 lncRNA downstream 62707 53357391 ~ 53403946 (+) True G622641
TU708223 lncRNA downstream 111150 53405834 ~ 53411747 (+) True G622662
TU708231 lncRNA downstream 119826 53414510 ~ 53414798 (+) True G622669
TU708273 lncRNA downstream 229683 53524367 ~ 53527401 (+) True G622706
TU708352 lncRNA downstream 294305 53588989 ~ 53637160 (+) True LOC110527993
XM_021609673.2 mRNA upstream 13080 53127421 ~ 53136965 (+) True lrig2
XM_021609665.2 mRNA upstream 58991 53065269 ~ 53091054 (+) False LOC110527984
XM_021609671.2 mRNA upstream 58991 53065269 ~ 53091054 (+) False LOC110527984
XM_036983492.1 mRNA upstream 58991 53065271 ~ 53091054 (+) True LOC110527984
XR_005052604.1 mRNA upstream 61082 53065269 ~ 53088963 (+) False LOC110527984
XM_036983515.1 mRNA downstream 10787 53305471 ~ 53334514 (+) False LOC110527987
XM_036983519.1 mRNA downstream 10788 53305472 ~ 53311558 (+) False LOC110527987
XM_036983520.1 mRNA downstream 10788 53305472 ~ 53311558 (+) False LOC110527987
XM_036983522.1 mRNA downstream 10788 53305472 ~ 53311558 (+) False LOC110527987
XM_036983523.1 mRNA downstream 10788 53305472 ~ 53311558 (+) False LOC110527987
TU707108 other upstream 656805 52491168 ~ 52493240 (+) True G621695
TU707063 other upstream 758412 52391348 ~ 52391633 (+) True G621650
TU705038 other upstream 2076038 50960494 ~ 51074007 (+) True LOC110527970
TU703948 other upstream 2845813 50303430 ~ 50304232 (+) True G618712
TU703100 other upstream 3529877 49586870 ~ 49620168 (+) True tafa4b
TU708825 other downstream 459222 53753906 ~ 53754119 (+) True G623180
TU710327 other downstream 1528953 54823637 ~ 54824199 (+) True G624628
TU710684 other downstream 1752612 55047296 ~ 55052688 (+) False G624962
TU710686 other downstream 1752612 55047296 ~ 55052688 (+) True G624962
TU710695 other downstream 1775948 55070632 ~ 55072387 (+) True LOC110528007

Expression Profile