RNA id: XM_036983515.1


Basic Information

Item Value
RNA id XM_036983515.1
length 2890
RNA type mRNA
GC content 0.38
exon number 19
gene id LOC110527987
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53305471 ~ 53334514 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAACTACTGGAAACCAAGTTTTAGATGAAGTGCTACAGTGTTGCTGGAAAGTGAAAATATCTTCAAGCGACAGTTGAAGTTGTCCATGGACTGGTTGGTACTGATTAAACAGCCAGCTAGATAGTGCCAACAAGATCAGAGAGAACTTGTTAGATCGAGAGACCGACTTGTCTTCACATAAAATCAACTTTAAAAAGGACAGCCAGTATAATGTTTTATTCAAAGGCATGGACTAAGTGCTTGATATGCCTTATCTTTTTAACAAGTGGAAATGCCGAGTGTCCCAAACCTCAAGTAGAGGGAAATGTTGTTCTAACGACTGATGCGCTATTAATGAACGATTTTCCGGAGGGAGGGGAAGCCACTTTTGAGTGTGCCAACGGCTACTTGAAAGAGCAAGGATCTGAAAGAATCACCTGCACAAGTGGAAAGTGGAGCACGCTCAAATTAACCTGCAAAAAGAAGGACTGTGGTGCCCCCAGGAAGATGCCACATTTGACATATGAGTTTAAGGAAGGCACACTTTTTGGTGCATCAGCAAGAGCAATCTGTGATAAAGGtTATCAACTTATGGGCCCAAGTTACAGGCAGTGTTATGCCATAGGTTGGAGTGGAAGACCAAGATGTAAAGTGGTAACTTGTGATAAACCTCCTGAGATAATGCATGGCACGATCATAGAGAAGCCTGGCGAAGAGTTACCAGAGTATGGTGGTGTCATACAGTACTCCTGTAATGAAGGTTACACCCTCATTGGAAACAAATCAATTGAGTGTATTGAAGATGGTGAATACAACTCATTACCTCCTGAATGTAAAGATGTCAATGACATTCTTTTGAAACCAACAACTATATCAACatcatcaataacaacaacatcgACTGTTCCACCCACAATACAAGATGTCAATGACATTCTTTTGAAACCAACAACTATATCAACatcatcaataacaacaacatcgACTGTTCCACCCACAATACGAGATGTCAATGACATTCTTTTGAAACCAACAACTATATCAACatcatcaataacaacaacatcgACTGTTCTACCCACAATAAGAGATGTCAATGACATTCTTTTGAAACCAACAACTATATCAACatcatcaataacaacaacatcgACTGTTCCACCCACAATACAAGATGTCAATGACATTCTTTTGAAACCAACAACTATATCAACatcatcaataacaacaacatcgACTGTTCCACCCACAATACGAGATGTCAATGACATTCTTTTGAAACCAACAACTATATCAACatcatcaataacaacaacattgACTGTTCTACCCACAATAAGAGATGTCAATGACATTCTTTTGAAACCAACAACTATATCAACatcatcaataacaacaacatcgACTGTTCCACCCACAATACAAGATGTCAATGACATTCTTTTGAAACCAACAACTATATCAACatcatcaataacaacaacatcgACTGTTCCACCCACAATACGAGATGTCAATGACATTCTTTTGAAACCAACAACTATATCAACatcatcaataacaacaacatcgACTGTTCCACCCACAATACGAGTTTCAGGGAGGAATAATGGCGTTGGGGAACATGACACCAATGCAGGTACTGAGATTGCAGCAGTTGTGGGAAGTGGGATCGGCACTGTCATAACAGTTACACTTATTGTTCTGATCACACGGTATTGGAAGAGGAAAGGCTCGTACCAGTTTGGAGAAGACCGAAGTCGAACAGAGGAATTATTACAATTTCAAAATAACTAAGTTGAATGCCTACCCAAGGGCTAGGACTGCACCTATCTGCTAGTCTGCATCTGTAGCCTTGAAAAGTAGTGCCAGCGGATTGTTCCTCTGACCATTCCCTGGTTGGACAAAGCCATTTAATTTACAGTGCCTTTATGTATGTGGCAATACTGAATGGAAGTTATAATTGCACTTTTTATTAAGTTGTTTTTGAAAGTCAGTTCAGCGGAAATGTTTTAACCCAATGTTTGAAAACCggtatttaaatattttttttctccatttatatacaaaactgaaatataccTAATTGTCTTTTCAACTGCCATATTTGACTACAGGTTGCTAGCTTGCTCTGTTGTGTGGGCAGAAGCCCCTGTAATGAGATTAGTGCACTAAACAAAATGTATGACTGAGGAAATCCCCAGGCTGATAATCACTGACCATTTCTAAATGTGTGCTTACTGATCGTGGCTCACAGGAAAATAACAGTAAGAGACAGTTTCCTGGACCCAGGTTAAGCCTACAGCACTGTATTCCTTTTCAAGTAGGCTTAATCTGGGTCCAGGAAACCAGCTCTTCATGTTATTTTCCTGCAGCCCCAAATGTCACAAAATAATGTCAATCTTATTTACTTAGAGGTTTTGTACTTTTGATTTTCTAGTTTGTATTGTGTGATTTAAGAGATCAAATTATTTTTATGATAACTGCCTTTGCTCCTTCTTTGAGACACATTTGTGTAAATATGAAAGTATGTACATTGTCTAATAATCATGGTTGGGTAGGTTCATttgtaaatgtaatctgttacagttactatacTATatgccagaaatgttccatatccacaaaaagcttatttctctcaaatgttgtgcataaaTTAGTTTACATCTAGGGTTGCCAACTTTTTCACTACCAAATAAGGGACAAAAGGTGGCGTGCCAGTCAGTGCACAGTGCCACGGCGGTATGGGTATGGTGTCGTGTGAATACAGTGATACAGTGTATATTCATATTCTTATTCAATTGGAAAGGCAAAACATTTTTATATTCCATTTAGCCTATAGCTTTACTAAAACTCCATCATTATGTAAACTTATATGAATAAATCTCTAAATAAATTATCAAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU708020 lncRNA upstream 156956 53148309 ~ 53148515 (+) True G622538
TU707786 lncRNA upstream 165705 53139553 ~ 53139766 (+) True G622316
TU707774 lncRNA upstream 188882 53104550 ~ 53116589 (+) True G622304
TU707680 lncRNA upstream 328828 52958978 ~ 52976643 (+) True G622216
TU707639 lncRNA upstream 396657 52908609 ~ 52908814 (+) True G622182
TU708197 lncRNA downstream 22877 53357391 ~ 53403946 (+) True G622641
TU708223 lncRNA downstream 71320 53405834 ~ 53411747 (+) True G622662
TU708231 lncRNA downstream 79996 53414510 ~ 53414798 (+) True G622669
TU708273 lncRNA downstream 189853 53524367 ~ 53527401 (+) True G622706
TU708352 lncRNA downstream 254475 53588989 ~ 53637160 (+) True LOC110527993
XM_021609674.2 mRNA upstream 10787 53150045 ~ 53294684 (+) False LOC110527986
XM_021609675.2 mRNA upstream 10787 53150045 ~ 53294684 (+) True LOC110527986
XM_021609676.2 mRNA upstream 13722 53150043 ~ 53291749 (+) False LOC110527986
XM_021609673.2 mRNA upstream 168506 53127421 ~ 53136965 (+) True lrig2
XM_021609665.2 mRNA upstream 214417 53065269 ~ 53091054 (+) False LOC110527984
XM_021609709.2 mRNA downstream 195719 53530233 ~ 53546191 (+) False LOC110527990
XM_021609710.2 mRNA downstream 195719 53530233 ~ 53546191 (+) True LOC110527990
XM_036983526.1 mRNA downstream 217794 53552308 ~ 53563191 (+) False LOC110527992
XM_036983525.1 mRNA downstream 217795 53552309 ~ 53563191 (+) False LOC110527992
XM_021609718.2 mRNA downstream 217796 53552310 ~ 53563191 (+) False LOC110527992
TU707108 other upstream 812231 52491168 ~ 52493240 (+) True G621695
TU707063 other upstream 913838 52391348 ~ 52391633 (+) True G621650
TU705038 other upstream 2231464 50960494 ~ 51074007 (+) True LOC110527970
TU703948 other upstream 3001239 50303430 ~ 50304232 (+) True G618712
TU703100 other upstream 3685303 49586870 ~ 49620168 (+) True tafa4b
TU708825 other downstream 419392 53753906 ~ 53754119 (+) True G623180
TU710327 other downstream 1489123 54823637 ~ 54824199 (+) True G624628
TU710684 other downstream 1712782 55047296 ~ 55052688 (+) False G624962
TU710686 other downstream 1712782 55047296 ~ 55052688 (+) True G624962
TU710695 other downstream 1736118 55070632 ~ 55072387 (+) True LOC110528007

Expression Profile