RNA id: XM_021609702.2


Basic Information

Item Value
RNA id XM_021609702.2
length 2231
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC101268938
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53380501 ~ 53400793 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGTGGCGCTTTATCCGCCCCGCTCAAGATAGGAGGAAaccctccttctctgtcacacATTCACACTGGACAGGAGGAGAATGTTAGCAGCAGCATCCAAAAGGAGAATGACTGAGACCCACAAAATGATGGCTTTCGCTTTGCTTTTCATCGCCACACTCCTTCACGGTGGCGTAGTTGCAGAATATGAGGTTGTTACTGGGCTCACACGGCCAGTGAATGATGCTGGAGTCATTCGTGGGGATGACATTGATACTACACAACTGTCAGATGAAGCAGATACACCCTTTTTCCAGATCATTGTATTCCCCAGTATTCCTGGACTGGACCTCTCAGACATTTTAGATGACACCACAGCGGCTCCAGTCACCAAGGTGGTAGAGGAGACCACAGACATGAGGGAGGCCACAGAGAAGACTGGTGAAGCAGCAACCACAGACGACAACCAGGAGACCCAGGCTCCCCAGCAGATTCTGATCTCCCAGTCAAGTGACATGGTGCTCATTCCAGAGGCTGGTGTGATGTGTGTTGATAAACAAGCGGTCCAGGACAGAGATGCAGTGAGTCTGAAACTAAAGGCCTCGTCCAGCTGTGAAGAGACCAGGTCTAAAATTGAAAGTGTTCTGGAGCACCTGTGTGGGGTCGACTGTAAACTGGAGGTCTTTCAGGAGGACAACTCTAATGAAATCCTGATCTTTGGCCAATACATAGAAGCTGATGCTAAAGGAATGGCAGAGAAGTTCAACAATGACAATATAAAAGACAAGATTGATTTTGAGGAAGCTGTTCCTCGCTGGGGGAAGAACTCCAAGCTAGTGCTGGTCTCCCTGCTGCTCACTGGACTGCTCCTGGCTATTCTTCTCATTGCAGGCTACTACCTGAAAACCCACCGCCCACCACCCAAGGGAGCGAGACTGGCCGAAGAGGGTTTCCAGGTGGATGAGGAGAACCAGGCCAACACTCTGGTATCTGTGGCCCCTCTGCAACCACAGGATCCCCTGGACAAGCCCCCCACCAACGGCCACTCCGCCACCCAGACCCCCGTTGCCGACACCGAAATGTGAACAAGCTCTGAAGGACACCCCCACCGCCCCATTCCTCCATCACCACATTCCCAATACCTCTCCCCCTTAGAGTTACCTGGGGATACTGCACTCTGACACGGACAAAGATTCAACATCCAACCCCACCTGATCCAACCCTCCACCCCCAGGATGATGACAATGAGGAAACTGATGACGACGATgcctgtaatgtgaagaacagATTGTGATCACTGGCCTCTATTAGGTTTCAGTAGCGTCAGAGAAGGAGCCTAAACTCAGTTTGGGGGACTGGACAGCTGGGACACAGACTGCAGTCCAGAAACAATAATCACAGCAAAGAAAGGGCAACAGATCACCAAAATTGACAGTTTGTGTTTCCAAATTCAAGTATAAATCAAGGTATATGCTATATCTTAAACACTTGCAGATCTGAAATGTACTCATTTGAACTAAAGCGTCATTGTAGTTTAAAGTATTGATTGCTTGGTTCATTTGTTTGTATGATCTTATGTGATTGTTTGCTTGACTCGCCTGTTCGAGGTAAGAAGTCAAATTTGGGTAACAGAAGTGGAGAAAGAGTGATTCAATTAATGGAGATAATTTGAACCATTGAAGAGGTTGAATAGGCAGCTTTAAAATAAGTATCGATATGACTGGCTAGTGCAGAGCTCAGAGTTGAATCCTGTTGCCGTTAATCGAGGCCTGTCATAAATTGTGTGAGGGGCTGCCGTATGTTTGTTTCAGAATTATGTACAGTAGGCTTAGTGTGTCACTATTTATCAAGACAAACTTTCTATTGTACAgtttttttaaacatgtttttttctgttCTGACTTACCACTGTGTCTTTGAGAATGTTGAACCAGGTAGACTCATTTTATCATTCAGGAAAACAGACTGATCAAATTCGCCCACAAAACTTGTCTATAATATTAGTCTCTATGGTGCACTGCCGCTAGATTTTTGACAAAACCCCTAAACATATTCAACATTTCAAAGACACTTTATGTCCTCAATGAATCAGTCCATCATGAAACATACATGCATGGATGAAAGTGAAGCTGTATTTTAGCTATTGTTTTTTAAGGACTGATTGTTTTCATACAATATTGCATGTGTACATATGCCCTTTTTCTCGGTTTGTAATATCTGTGTCCCACATAAATTGCGATTGTGTCAATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU708580 lncRNA downstream 7120 53368443 ~ 53373381 (-) True LOC118965299
TU708607 lncRNA downstream 54511 53303844 ~ 53325990 (-) True G622987
TU708611 lncRNA downstream 60795 53317862 ~ 53319706 (-) True G622991
TU708471 lncRNA downstream 136659 53150477 ~ 53243842 (-) True G622874
TU708016 lncRNA downstream 234717 53145416 ~ 53145784 (-) True G622534
TU708636 lncRNA upstream 5237 53406030 ~ 53411743 (-) True G623013
TU708641 lncRNA upstream 12137 53412930 ~ 53413188 (-) True G623018
TU708762 lncRNA upstream 189371 53590164 ~ 53591403 (-) True kif17
TU708817 lncRNA upstream 334255 53735048 ~ 53737808 (-) False G623173
TU708815 lncRNA upstream 335471 53736264 ~ 53737808 (-) True G623173
XR_005052607.1 mRNA downstream 7072 53369634 ~ 53373429 (-) False LOC118965299
XR_005052608.1 mRNA downstream 7072 53369634 ~ 53373429 (-) False LOC118965299
NM_001160501.1 mRNA downstream 274637 53090437 ~ 53105864 (-) True pad
XM_021609659.2 mRNA downstream 538732 52785667 ~ 52841769 (-) True LOC110527983
XM_021609658.2 mRNA downstream 553964 52785667 ~ 52826537 (-) False LOC110527983
XM_021609704.2 mRNA upstream 29154 53429947 ~ 53486228 (-) True LOC110527988
LOC118965356 mRNA upstream 126055 53526848 ~ 53530100 (-) True LOC118965356
XM_021609705.2 mRNA upstream 189045 53589838 ~ 53602153 (-) False kif17
XM_021609706.2 mRNA upstream 189045 53589838 ~ 53602153 (-) False kif17
XM_021609727.2 mRNA upstream 212774 53613567 ~ 53623906 (-) False LOC110527994
TU708601 other downstream 57670 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 2421961 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 3074345 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 3444220 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 4083253 49295255 ~ 49297248 (-) True mustn1b
TU711185 other upstream 1671686 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 1763699 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 2032663 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 3290530 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 3433792 56834585 ~ 56835092 (-) True G627314

Expression Profile