RNA id: XM_021609706.2


Basic Information

Item Value
RNA id XM_021609706.2
length 3493
RNA type mRNA
GC content 0.51
exon number 14
gene id kif17
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53589838 ~ 53602153 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGAACGCCGtgggaagacaggcagacagagcgaGCGGGCGATCTAATAGTCTCTGTTTAgcagttttgttttgtttttgtgcaCGGATTGTATTCATTGAAGGACATGTCATCTGCCAATCCAACCGATAAGCGGCCTGATATGTTAGCTAACGTCGGTAATGTTACAGGTTGTGTTTGCTTTGATACTTGGTCAATGTGAAATAGCTAGTTTAGCGACTGACTATATCATGCTGATTTGCTATCCTGCTTCTGTGACCAGATCAACAGGTTGATGTTAGACTTTACTATTTTGATCAGATAGTATGTCAGCTGCATGAAGTATGTCATAGCTGCCAGTGAGATTAATTGTTTAGCTACAAATGAACAGTAATCTAAACTATTGTAACGACAATTATTGTTTCTTGCCGCTAGCTTGCACAATGCCTGAAATGGATTCAACAACTGATGATTGATGTTGACATTGGTAGCCAATAATATCAATGATGATATTGACGTTTGTTGCCAATATCAAGAGATAATTcttatagacaaacattggtgtCAGACTGCCTTGCTAACTTGTCACCAGTGCTTGCCTGATATCAGACATACCAAGAAGACAGAGGCAAAAATGGCTTCAGAGGCAGTGAAGGTAGTGGTCAGGTGTCGGCCGATGAATGATAGGGAGCAAATCCTGAATTGTAAGATGGTAGTATCAGTAGAGACGAGTAGGTGTCAGTGTTTGATCAAGAAGCCAGGGGCGAAGGAGGAGCCACCAAAACAATTCACCTTTGATGGAACCTACTTCATTGGCCAAACCACTGAGCAGATGTACAACGAGATCGCCTACCCTTTGGTTGAGGGTGTGACTGAAGGGTACAATGGAACAATTTTTGCATATGGCCAGACTGGAAGTGGCAAGTCCTTCACCATGCAGGGGGTATCTGAGCCAGCAGCCCAGAGAGGGGTCATCCCAAGGGCCTTTGAGCACATCTTCGAGAGCATTCAGTGTGCAGAAAATACAAAGTTCCTGGTGAGGGCTTCCTACTTAGAGATCTACAATGAAGAAATCCGAGACCTTTTGGGAAATGACACCAAACAGAAAATGGAGCTGAAGGAGCACCCAGAGCATGGTGTATATGTGCGAGACCTCTCCTTGCACACAGTGCACAGCGTGGGGGAGTGTGAGCGCATTATGGTGCAGGGCTGGGGGAATCGATCTGTGGGCTACACCCTGATGAACAAGGACTCCTCCCGCTCCCACTCAATCTTTACCATTCACATGGAGATCTGCAACACAGATTCAGCTGGCGAGGACCACCTGCGTGCTGGAAAACTGAACCTGGTGGACCTGGCAGGCAGTGAGAGGCAGTCTAAGACTGGTGCCACCGGGGAGCGGCTCCGTGAGGCCACCAAGATCAATCTGTCCCTGTCGGCTCTGGGCAACGTCATCTCTGCCCTGGTGGATGGCCGCTCCAAACACATCCCCTACCGAGACTCCAAGCTGACCCGGCTGCTGCAAGACTCCCTGGGAGGGAACACGCGCACCCTGATGGTGGCCTGCCTCTCGCCTGCAGACAACAACTATGAGGAGAGCCTGAGCACCCTGCGCTACGCCAACAGGGCCAAGAACATCCAGAACAGGCCCCGCATCAATGAGGACCCCAAGGATGCCCTGCTCCGAGAGTATCAGGAAGAAATCAAGCAACTACGCGCCCTCATCTCTGGCCAGCTGGGCAGTGGCAACCTGTCATCGCTTCTGGCTGGTCAGTTGTCTGCGGGGACTTCTGCTGGTCCATCAAGGCCACAGTCTAGCAGTactgagggggagaaggagaagattAAAGAGGAATACGAGGAGAAGCTGGCCAGGCTTCAGGCTGAGTATAACGCTGAGCAGGAGTCCAAGGCCAAGCTACAGGAAGACATAGCTGTTCTGCGCTCTTCATATGAGACCAAGCTGTCCAGTCTAGAGAAGTCTAGGGCCAGCAGAGGGCACAATATTACCACGGCTGAGTCAGAGATCCCCATTCTAATGAAACAAGCTCTTGAGGAGGAATCATGCTGTGTCACTGCTGCCCCACATGAGCATGCGGATTTGGAACCAGCCCTGGCCAAGGTGAGCCAGACACAGACATCTCGCCAGGTAACCAGTGTTCAGACAGAGTCTGAGGGGGAGGAGAATGCAGACTCCCCTCCCATTGGCACCCCAGGCCCTCTGGACCAGAAGCATGTCCTCGAGAGGCTGCAGCAGTTGGAGCAGGAAGTGGTGGGAGGGGAGCAGGCTCGGAACAAGGAGTTACAGCAGAGACACCGACAGAGGAAGACCCTGGCAGACCAGAGGAAGAAGCAGCTGATTGAGGCTCTGGCAGAGAACCGTGAGGAGAGTGACAATGTGATGCTCAATGTCTATGACTCCATCCAGGAAGAGGTCCATGCTAAGAGTCGGCTCCTAGAGAACACCCAGGGCAAGCTGAAGGCGGCCAAGCTGGAGATCCGGGACCTGCAGGCGGAGTTTGAACTAGAGAGAAACGACTACCTGGCCACCGTCCGCAGGCTGGAGAGGGAGGGCCATTTGCTGCAGGCACTGCTGGAGCGCATGGCCCCTCTGGTCCGCCGTGACTGCAACTACAGCAACCTGGACCGCCTGCGAAAGGAGGCCACCTGGGATGAAGACGGTGCCACCTGGAGGCTGCCTGAGGTGGTGGTGCAGAAAATGGCCTTGCCATCAGTAGCTCCTTCAGCTCAGAGGCTCTCTGTATGCAGGAGCTCAGTGGCTGACACAGGAGAGTCCTTTCAGGATGACGAGGACCGATATAAGGAGATGTTGAACCGCAGCGACAGCGAGAACTTTGCCAGCAACTACTTCAAGCCTAAGAGAGCCAACCAGCTGCTGGGCGGTGAGCCACTGAAGGGACTGGCAGTTCACTCAGCACCCCAGGGGAACGGGACGCCTCACCTGACCTCCAGCGGCTCCAACATCGGCCCCTCACTCAGCACTGAATCCCTCCTCCCTCGCCCCTTCCGCCTCGAGTCACTGGGGATCACCCCATCCAATGGCAAGGTGAAGAGGAAGAAAAGCAAAACGCACATCCCCTATGAGGGGAACTGAGAGAGCTGGGCTAGAGGGGAACTCTTCTGCAACCTCTCAATTTTTACCTGCCACCCTTTTTGACTCCTAGAGACCACACTATTTGTTGACTTGTTTAGGTAGAGTATCTCGTTAATTCACTGTGATTGACCCTGTGGTGTTGGTGAACTATTGAACTTTTGCTAACCAGCAAtataatgtcacatttacatgGACACTTGGTCTGGCAATGTGATGTTACTGGTGTGTTTGTTTTTTAGTACCTTTTTAAATGTTAGCTAACATTATGCTACTACCTAATGCCACACACCATAGTGCTTGCACTGACTCTTAATGCTGTGATATGGTTTATCCAACCCTGAATGTATTATTTATCACTGTTGTGGTTTTTGGATGAACTGTTAATACAATATATTTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU708641 lncRNA downstream 176650 53412930 ~ 53413188 (-) True G623018
TU708636 lncRNA downstream 178095 53406030 ~ 53411743 (-) True G623013
TU708580 lncRNA downstream 216457 53368443 ~ 53373381 (-) True LOC118965299
TU708607 lncRNA downstream 263848 53303844 ~ 53325990 (-) True G622987
TU708817 lncRNA upstream 132895 53735048 ~ 53737808 (-) False G623173
TU708815 lncRNA upstream 134111 53736264 ~ 53737808 (-) True G623173
TU708821 lncRNA upstream 139201 53741354 ~ 53748563 (-) True G623176
TU708822 lncRNA upstream 148756 53750909 ~ 53751186 (-) True G623177
TU708823 lncRNA upstream 149518 53751671 ~ 53751956 (-) True G623178
LOC118965356 mRNA downstream 59738 53526848 ~ 53530100 (-) True LOC118965356
XM_021609704.2 mRNA downstream 103610 53429947 ~ 53486228 (-) True LOC110527988
XM_021609701.2 mRNA downstream 189045 53380501 ~ 53400793 (-) False LOC101268938
XM_021609702.2 mRNA downstream 189045 53380501 ~ 53400793 (-) True LOC101268938
XR_005052608.1 mRNA downstream 216409 53369634 ~ 53373429 (-) False LOC118965299
XM_021609727.2 mRNA upstream 11414 53613567 ~ 53623906 (-) False LOC110527994
XM_036983529.1 mRNA upstream 11416 53613569 ~ 53623905 (-) False LOC110527994
XM_036983530.1 mRNA upstream 11416 53613569 ~ 53623906 (-) False LOC110527994
XM_021609724.2 mRNA upstream 11417 53613570 ~ 53623904 (-) True LOC110527994
XM_021609713.2 mRNA upstream 22111 53624264 ~ 53629556 (-) False LOC110527991
TU708601 other downstream 267007 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 2631298 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 3283682 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 3653557 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 4292590 49295255 ~ 49297248 (-) True mustn1b
TU711185 other upstream 1470326 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 1562339 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 1831303 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 3089170 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 3232432 56834585 ~ 56835092 (-) True G627314

Expression Profile