RNA id: XM_021609727.2


Basic Information

Item Value
RNA id XM_021609727.2
length 2235
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC110527994
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53613567 ~ 53623906 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACCTATGTTGCGCAATGAGTGTATGGACCATCAATATGGGCTGCAGAAATGCCTTTTAAGTATGGCCTGATTTATATCGGCGCATCGTGCGTTTAAACGGTTTTTTTTTCATCTCAAATATGTCTCGAAAGGTAAAACGTTTCTAGTCCCGCCCAAACACACCGGTGAATAGCCAACTCTGAATTGAGTCGGGGCGGGCGTCAATTTGACGATGAGGTAActgactgggagaggaattcagaGTTTGGAACAGTGGAACGGGGTCCGGAGTACAAGAGTGCGGAAGTGAAAAGAGCGTTGTTGTGGCCCTAAAAACTCAGGGGAACTCCTCCAGAAACAGCAGCATAAAGAAGTAGGCTAACTCAGGAGTGAAAATGATGGGTGAGATACCGGTCAGGGAGGATGGCACAGTTACAAGGTCAGCTGAGACATGCAAGAAAAGGAGGCCTGTGTCCCTTAAATTTTCCATCAAAGGGGTGAAGATGTATGATGAAGATGAGACGACCCTCCTCATGGCCCATGCTCTACGAAGGGTCTCCCTTTCCACTGCCCGCCCCTCGGACGCCCAGTTTGCCTTTGTTTCCCACAACCCCGGCAGCCCTGATGCCCAGCTATACTGCCACCTTTTCAAGGCTAGGCATGCCAGAGCAGCCCAGTTCCTGAACCTGTTGCTGTGCCGCTGTTTCCAGCTGTCCTACCTGGCAAAGCACCCAGAGGAGGCGCAGGATGAGTCTGTCGGCCCACTGCCCAGCCGTGCCCCCTCCCTCCTCAACCAGGGCTTCCCTCTCTGTGTCAGTGCCCTTGTGTCATTCCGAAGGGCCCCCACTCAGGGCTTACTCCCAGGGGAAAAGGTCTTCCCATTGAAGAACAACGGAACAACAACTGAGGAACAACCGAGCAGCCAAGAGGAGGTCTTCAACTCCTCTCCTTCCCTGGTGCGCAAGAGAGCCATCCGCAACAAAGTACTGCGCTCAGGAGCCTATCGCTCCTTCACTTACAGCCCTCACAAACAACGTCACCTTCAGGATCAGCTAAACTCTCCAGAAGggaaggggcAGGACAAAATGCCAGTGAGGAGAGCCCGGGCCCCGAGCCTTGCTGAAACAGAAGAAGCTCTGGCTCAAGCAGTGTGGTGTTGGGCTGGCATTGCCACTGACAGCAGCTCCTCCCTGCTTGCAGAGGATGTCCTGGGGTCGTACCTGCTGTGCCCCCATCCTAAGAGAACTGGCTGTGGCTCTCTCATAATTCGTTTCTCTTCTGGACTGGTCACCCACCTAATAAACAACACCTCCAACGGGAAATACCTGCTTGAGAACTGCCACATAGAATTTAGCACCATTGCTGCCTTGATAGAGCACTGCACCGATATCAAGGGGGAGCTGGACTGTCCGCTGAGTTGTGCCCGTGTGAACCACTGCTATGAGTGGGAGGAGAACGTTGCTAAGGCACTGCCTTTAGCCTTACACCAAGGCCTCAAAAGAAAGAATGCAAAATACACCCAGAGGAAACAATGGGTTTAAAAGTAATTTCTGATCATTGGATTGATCGATGTATCTCATTTTCTAAAAGACACTGACCATATGTTACACTGACACCTTAAATATATAATTCATTAACTTGCATGCTTCACTTTTGTTATTGTTTTCAGATTTCTGATAGAAACACAACTCTAACTATCAAATTTACTTCCAGCAGGTGAATTGTGATGAGTAGAGTAACATTTTGACACTTAGCCTCTGGGATGTAGGGTTGTTTTAATGTCAAAAAGCTGTGTGTTTGAGTATATTCTTCTATGTTTTAGCTGCACCTACCTTACTTCACCTACGTTTCAATTaaattattttaatacattttaattacattattttaaaACGTAGGaatattatgtgtgtgtttgtatagacTATATAGGGACATTTTTTTATAGATTAAGCAGACTAAGGTTTTTTTGTACATTAACTCTGACTCATGTTAAGCTGTCTTTTTGAATTTGTGTTTTTCACTGCTGTCTTTTAAAGTGTTCTGTGAGAACTAGCAGTATTTCTTCATTTTGATTACAGATAAATGTACTTCCTGAATTAAAGGgtattgttgtgttttatatttgtaAGCATAATGCATTGCCATATTGTATACTGTataccaggtattcccaaactggggtacgccaaataaaaatgtgattcacatatttttaaaatatatatatatatatatatatcttcaaattttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU708762 lncRNA downstream 22164 53590164 ~ 53591403 (-) True kif17
TU708641 lncRNA downstream 200379 53412930 ~ 53413188 (-) True G623018
TU708636 lncRNA downstream 201824 53406030 ~ 53411743 (-) True G623013
TU708580 lncRNA downstream 240186 53368443 ~ 53373381 (-) True LOC118965299
TU708607 lncRNA downstream 287577 53303844 ~ 53325990 (-) True G622987
TU708817 lncRNA upstream 111142 53735048 ~ 53737808 (-) False G623173
TU708815 lncRNA upstream 112358 53736264 ~ 53737808 (-) True G623173
TU708821 lncRNA upstream 117448 53741354 ~ 53748563 (-) True G623176
TU708822 lncRNA upstream 127003 53750909 ~ 53751186 (-) True G623177
TU708823 lncRNA upstream 127765 53751671 ~ 53751956 (-) True G623178
XM_021609705.2 mRNA downstream 11414 53589838 ~ 53602153 (-) False kif17
XM_021609706.2 mRNA downstream 11414 53589838 ~ 53602153 (-) False kif17
LOC118965356 mRNA downstream 83467 53526848 ~ 53530100 (-) True LOC118965356
XM_021609704.2 mRNA downstream 127339 53429947 ~ 53486228 (-) True LOC110527988
XM_021609701.2 mRNA downstream 212774 53380501 ~ 53400793 (-) False LOC101268938
XM_021609713.2 mRNA upstream 358 53624264 ~ 53629556 (-) False LOC110527991
XM_021609714.2 mRNA upstream 358 53624264 ~ 53630350 (-) False LOC110527991
XM_021609711.2 mRNA upstream 358 53624264 ~ 53636278 (-) False LOC110527991
XM_021609712.2 mRNA upstream 358 53624264 ~ 53636278 (-) True LOC110527991
XM_021609730.2 mRNA upstream 12877 53636783 ~ 53703957 (-) False LOC110527996
TU708601 other downstream 290736 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 2655027 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 3307411 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 3677286 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 4316319 49295255 ~ 49297248 (-) True mustn1b
TU711185 other upstream 1448573 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 1540586 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 1809550 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 3067417 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 3210679 56834585 ~ 56835092 (-) True G627314

Expression Profile