RNA id: TCONS_00034191


Basic Information

Item Value
RNA id TCONS_00034191
length 1809
RNA type mRNA
GC content 0.42
exon number 9
gene id XLOC_017150
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 9128256 ~ 9148323 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tagaattacactttattttataCAGCAGCTAAATGGCATTGTGGATTAAGTGTTTACCAGACTGTTTACCACTTCCAAACTCCAAGTGAACCATTTCGACCTGATTTTGCTCTAAAATATTAGTGTTGTTTGCCAGTTAAAGAATAAGGTTACTTACACAATGAAAACTTGGTAACAATTCCCTCAATTCCTTGTCATCCAAGATGTTAATTTCATTTTCTTCAGTTGAATTaagattttttacaaattttcagGAATTTTCTATAtattctgtatattttattagtGGACTTCAATGGTGTTTGTACGGAGTTCGATGGTTTGAATTTACAAACTGCACTTTCAAAGGGTCCTAAATAAGTCAAGGAAATATTaagttgttaaaataataatattaacaggcCCAATAACTTAATAAAATTGCAATTTTAAGCTAAACTGAAACTGCAGAATAGAAATTTAAACCATGTCAATTATGTGTGTTTTTCCTCTGAGTTTTTCCTCATATGTGTGAAAGATGATATCTGTGTCTCACTATCATAATACTTAACACACAACGGGCACTAAGACCCCACGTGAGAAAGGACGCTGTTGTACTTGACGCCTTCCTGTTTAGCAGTTCTGTCAAGATTTTGTCAGTGTTGAACCTGAACCTGAACTCAACACATTTGCTGGACACGCACTGGGATTAAAGGTGGTGTAATGGCGAGCAATCCTGCAGTGTTGATGCGGTTGGTGGCTTCGGCCCACGCTGTGGCAGAAAAGGCTGGAACAATTGTCCGAAGAGTGCTCAAAAGTGGAGAGCTCGGTATTGTTGAAAAGACAGGAGCCAATGATCTACAGACACTGGCCGACAGGCTTGTTCAGAAGAGTATTTGTGCATCCTTGTCCAAAAGCTTCCCTAAACTCACTATTATCGGGGAAGAGGATTTACCGGCTGAGACTGTCGAAGATGACCTGATAGAGAACGGCCAGAACAGCTTAATCCTAGAAAAGTCCTGTCCAGATCAGTATGCAAGCCTTAAAGAGGAAGAGGTAAGGCAGAAAGAGAATGTTCATTTTGTTATAATTAGTTTTATTCTGAAATATCTGAACATATATGTAGCACAGTTTGGTATTCAAATGATTTTCATCTGTATTTCTCAGCTAGTTGTGTGGGTCGACCCTCTCGATGGAACTAAAGAGTATACGGAAGCTGCAAGGGTTTTGTACAGCCCAGTTTACATACAGAAGCCAGTGCTGCCCCACAGAACACCTAACCGGCTCTTGGATCATGTGACAGTCCTCATAGGTATTGCTCATGCAGGAACAGCCATTGCTGGAGTCATCAATCAACCTTTCTACAACTACCAGGCGGGGGCTGGTGCTACTCTAGGCCGGACATTATGGGGAGTGTTGGGTTTGGGTGCATTCGGGTTTCAACTCAAGGAGGTCCCAGATGGTAAAAGAATCATCACGACCACACGGTCGCATAGTAATAAACTTGTGATCGACACAGTTCAAGCAATGGAGCCTCATGATGTCATCAGAGTGGGCGGAGCTGGAAATAAGATCATCCAGCTGGTGGAGGGAACGGCTTCCGCTTATGTGTTTGCCAGTCTAGGATGTAAAAAGTGGGACACTTGTGCACCTGAGGCTATTCTGCACGCAGTTGGaggtaAACTGACAGACATGCATGGGAATACATACAAATATGATGCCAATGTGAAGCACATGAATTCTGCTGGAGTTCTGGCAACATTGAGAAATCATGAGTACTATTTAAGCAAAGTGCCGCAGGCCGTCCAACAGGCTCTTCCCACAGACTGA

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0046855 inositol phosphate dephosphorylation biological_process
GO:0008441 3'(2'),5'-bisphosphate nucleotidase activity molecular_function

KEGG:

id description
ko00920 Sulfur metabolism
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-040718-46 Predicted to enable 3'(2'),5'-bisphosphate nucleotidase activity. Predicted to act upstream of or within inositol phosphate dephosphorylation and phosphatidylinositol phosphate biosynthetic process. Is expressed in intestinal bulb. Orthologous to human BPNT1 (3'(2'), 5'-bisphosphate nucleotidase 1).

Ensembl:

ensembl_id ENSDART00000183072

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036371 lncRNA upstream 120920 8998775 ~ 9007336 (+) True XLOC_017148
TCONS_00036370 lncRNA upstream 130793 8996867 ~ 8997463 (+) True XLOC_017147
TCONS_00036544 lncRNA upstream 1050537 8071324 ~ 8077719 (+) True XLOC_017144
TCONS_00036369 lncRNA upstream 1225968 7901956 ~ 7902288 (+) True XLOC_017142
TCONS_00036543 lncRNA upstream 1588114 7533716 ~ 7540142 (+) True XLOC_017139
TCONS_00034209 lncRNA downstream 634821 9782940 ~ 9791721 (+) False XLOC_017160
TCONS_00034211 lncRNA downstream 648969 9797088 ~ 9801542 (+) True XLOC_017160
TCONS_00036545 lncRNA downstream 803445 9951564 ~ 9953982 (+) True XLOC_017162
TCONS_00036546 lncRNA downstream 919816 10067935 ~ 10068758 (+) True XLOC_017163
TCONS_00036547 lncRNA downstream 1073296 10221415 ~ 10225073 (+) True XLOC_017165
TCONS_00034189 mRNA upstream 2593 9124369 ~ 9125663 (+) True XLOC_017149
TCONS_00034186 mRNA upstream 1060283 8028613 ~ 8067973 (+) True XLOC_017143
TCONS_00034185 mRNA upstream 1326914 7799615 ~ 7801342 (+) True XLOC_017141
TCONS_00034184 mRNA upstream 1535150 7584211 ~ 7593106 (+) True XLOC_017140
TCONS_00034183 mRNA upstream 1535245 7584211 ~ 7593011 (+) False XLOC_017140
TCONS_00034196 mRNA downstream 63118 9211237 ~ 9216772 (+) True XLOC_017151
TCONS_00034197 mRNA downstream 75395 9223514 ~ 9239037 (+) True XLOC_017152
TCONS_00034198 mRNA downstream 129180 9277299 ~ 9301208 (+) True XLOC_017153
TCONS_00034200 mRNA downstream 207793 9355912 ~ 9421263 (+) False XLOC_017155
TCONS_00034202 mRNA downstream 326722 9474841 ~ 9568005 (+) False XLOC_017156
TCONS_00034188 other upstream 132275 8993860 ~ 8995981 (+) True XLOC_017146
TCONS_00034187 other upstream 193733 8934408 ~ 8934523 (+) True XLOC_017145
TCONS_00034181 other upstream 1787062 7341078 ~ 7341194 (+) True XLOC_017137
TCONS_00034180 other upstream 1796926 7327813 ~ 7331330 (+) True XLOC_017136
TCONS_00034173 other upstream 2208392 6919748 ~ 6919864 (+) True XLOC_017131
TCONS_00034199 other downstream 151315 9299434 ~ 9299549 (+) True XLOC_017154
TCONS_00034201 other downstream 207851 9355970 ~ 9358130 (+) True XLOC_017155
TCONS_00034205 other downstream 572002 9720121 ~ 9722138 (+) True XLOC_017158
TCONS_00034207 other downstream 615248 9763367 ~ 9768749 (+) True XLOC_017159
TCONS_00034217 other downstream 1341502 10489621 ~ 10489890 (+) True XLOC_017166