RNA id: XM_036983534.1


Basic Information

Item Value
RNA id XM_036983534.1
length 3426
RNA type mRNA
GC content 0.47
exon number 19
gene id LOC110527997
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53704724 ~ 53732788 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCTCTTACACACCCTCACACTCAGTCATGCCCGTCGATCAAGTCAATGCTGCTTCCTGTTTTTTGCGAGTTCCCTCTGTATTGTCTCGTTTGGCTAAATTGGGCTTAGTGAGAGCTCCTGAGGAGAGTGTACTGACAGAAGGCTGAGCAGAACAACATAGCTGCTTGAGAGGAAGGGCTCTTTGTAAACCTTTAAAGGACTTTTTGAGTGGATGTCCACGTACAAGAGGGCCACTCTGGACGAGGATGACCTGGTGGACTCCACCGGAGATGAGATCTACCCCTCCTCTGCCATGCAGgtGACACTGCGACATGGCCCTGGTCCCAGGTGTTGGGCTGAGAAGACACACACTGAAAGGAGGCTGTTGGTCTTAGTGTGTGCTCTGTCTGTTGCCTTGTTCTTCTCACTCATCACTGTCGGGATCTTCTACAAAGAGACTCACCCTGGTATGTGTCTGACGGAGCCATGCATTACTGTGGCCAGTGCTGTGATGGGAGCCCTGGACCACTCGGTGGACCCCTGCCATGACTTCTACAATTTTGCCTGTGGGGGATGGGTGAGGAACAACCCCCTCCCTGAGGGAAAGTCCCGCTGGGGTCCCTTCAGCAACCTATGGGAGCGCAACATGGCCGTCATGAAGCACCTGCTGGAGAACACCACCATGAAGGGGCTGAGCAAGGCTGAGAAAAAGGCCCAGAGGTATTACAAAGCCTGTATGAATGAGACTAAGATTGAGGAGTTAGGGGCTCAGCCTCTACAAGAGCTCATTAATCAGACGGGGGGGTGGGCCCTAACCGGCTCCTGGGACAAGAACAATTTCCAGGAGGTTCTACGCACAGTGTCGGCCAACTACCGCTGCTCCCCATTCTTCACTGTGTTTGTCAGCACTGACTCCAAAAGCTCCAACAGCAATATTATCCAGGTGGATCAATCCGGGCTGGGGCTCCCCTCACGGGATTACTACCTTAACAAAACGGCCAATGCAAAGTATCTGAATGCGTACCTAGACTTCCTGGTGGAGTTAGGGGTCCTGTTGGGGGGCTCAGAGGAGACGTCCAGATCGCTGATGCAGGAGATTGTGGACTTTGAGACCACCCTGGCCAACATCACCGTAccccaggaggagaggagggacgagGAGCTCATCTACCATAAGATCCAGGCAAAGGATCTGGCGACCTTGGCTCCTGCGGTGGACTGGATGCCCTATCTCACAGATGTGTTTGCTCCTGTACCCCTCAATGACTCAGAGCCTGTGGTGGTGTACGCCAAGGACTACCTCCAGAAGGTCTCTGACCTCATTGCCAGCACTAACAAGAGCATCCTGAACAACTACATGATCATGAAGGTGCTGAGGAAGATGGTGTCCATCCTGGACCAGAAGTTCCAGGATGCTGAGCAGCGCTTCTTTGAAGTCATGTATGGAAccaagaagAGCTGCACTCCACGCTGGAAGCTGTGCGTCAGCGACACGGACAGTGCCCTCGGCTTTGCTCTCGGGGCCATGTTTGTCAAAGCCACCTTTGACGAGGACAGCAAGGCCATTGCAGAGGATATGGTCTCTGAGATCAAATGGGCATTTGAGGATAGTCTGAAGTATGTGGGCTGGATGGACCAGGAGACCAAAAAGGCAGCCAAAGAGAAGGCTGATGCCATTTACAACATGGTTGGATATCCAAAATTCATCATGGACCCCAAGGAACTTGACAAAGTGTTCAATGATtttgAGGTGGGGTCTGACCTGTATTTCCAAAATGTCATGCAGTACTACAACTTCTCTGCCAGAGTGACTGCGGACCAGCTGAGGAAAACCCCCAACAGAGACCAGTGGAGCATGACCCCTCCTACGGTGAATGCATACTACAATCCCACCAAGAATGAGATGGTGCTCCCAGCAGGAATCCTCCAAGCTCCTTTTTACAGCCGCTCTTGGCCAAAGGCCCTGAACTTTGGGGGAATTGGTGTAGTTATGGGACATGAGTTGACACACGCTTTTGATGACCAAGGGAGGGAGTACGACAAGGATGGGAACCTCCGCTCCTGGTGGAAAAACTCGTCTGTGGAGGCCTTTAAGAAGCAGACCCAGTGTATGGTGGAGCAGTACAGTAACTACAGCATCAACAAAGAACCCCTCAATGGAAAACACACCCTGGGAGAGAACATAGCTGACAATGGTGGACTGAAGGCTGCCTACAAGGCTTATATGAACTGGATTGCAAAGAATGGAGAGGAGGCCACCCTGCCTGCCCTGGGGATGACCAATCATCAATTATTTTTTGTTGGATTTGCCCAGGTATGGTGCTCAGTTCGGACTCCGGAAAGCTCGCATGAGGGCGTCATCACAGATCCACACAGTCCATCAAGATTTCGAGTTATTGGCACCATCTCCAATTCCCATGAGTTCTCTGAGCACTTTGGCTGCAAGGCAGATTCCCCCATGAACCCTAAACACAAGTGTGAGCTTTGGTGATGCTTTGCTACCCATTTGTCGGTACGGCAGGTGGCAAAATGGGCATTGGGGATTTGGAGCAAAATAGAGGCAAAGTCTCTAAGGAAGGAGAGCATTTGTCTTGATACCACTAAAAATCCatctgttttacccactttaccCTTCTCAGGGTCTTTATGAGGGCTGTAGGTTGAACCAGCACCAACTCTCTTCATAAAGACAATTTGTTTTAGAAAGCTGCCTTTTCTCCCAATTAAACTCTATGAAAATGTGCCTTTATGTTTATATAAAGGAGGAACAATTTTAACACTGGAAACCGAAGAAATTGTTATAAAAAAGGGAAAACTAATGGAACTTCTCTCAATCAGGTTTTATGTGGAGTTGTCATATGCCTTATTTTTCAACAGGAAGTGATATTTATTTTCTGTCGGTTTCTTTTTTAACTGTTACAATTTGTATCTGATCAATCCCCCTCCATATGTTGTCTTCACTTATTGTATATTTTTAGACTGCAAAAGAATGACGAGTTGCAATTACTGGATTTGGACTGAAACAATATAATCCAGAGGAAACCGTCAATCACATCTAGAATACAAGTCAAGTAGATTGTAAAAGTCATATTTTATTATTGCCCATGATTGACCCGATTCAATAAGCTATGTGTATGTAATTTCTGCATCAACAAACCTAACACAACATCATCATTTGTGTAAAGTCTGATTGCTTAATGTCTCCAGTTTATACAGTAGTGATGTTGTAAAGAAGTGATACTCCGAATTGCTGATTGCCTGATATGATAAGGGACATATTATTTGAATAGTTTTCAATCAGAGAATTCCTGAAACTTGTGAAGGATGTATTGACCATCGAACAAGTCACATAACAAAGTGTTTTCGCATTCTGGAGCTGCTCATGCATGACAAGGCTTTTGTGTCATAAAACTATTTTTCTAATCTAATAAAAATATTGTCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU708762 lncRNA downstream 113321 53590164 ~ 53591403 (-) True kif17
TU708641 lncRNA downstream 291536 53412930 ~ 53413188 (-) True G623018
TU708636 lncRNA downstream 292981 53406030 ~ 53411743 (-) True G623013
TU708580 lncRNA downstream 331343 53368443 ~ 53373381 (-) True LOC118965299
TU708611 lncRNA downstream 385018 53317862 ~ 53319706 (-) True G622991
TU708817 lncRNA upstream 15598 53735048 ~ 53737808 (-) False G623173
TU708815 lncRNA upstream 16814 53736264 ~ 53737808 (-) True G623173
TU708821 lncRNA upstream 21904 53741354 ~ 53748563 (-) True G623176
TU708822 lncRNA upstream 31459 53750909 ~ 53751186 (-) True G623177
TU708823 lncRNA upstream 32221 53751671 ~ 53751956 (-) True G623178
XM_021609744.2 mRNA downstream 767 53636783 ~ 53703957 (-) False LOC110527996
XM_021609754.2 mRNA upstream 46616 53766066 ~ 53771880 (-) True LOC110527999
XM_021608275.2 mRNA upstream 54905 53774355 ~ 53775511 (-) True LOC110527121
XM_036984488.1 mRNA upstream 101010 53820460 ~ 53835329 (-) True LOC110527124
XM_021609763.2 mRNA upstream 447101 54166551 ~ 54180404 (-) True LOC110528002
XM_036983545.1 mRNA upstream 475265 54194715 ~ 54198212 (-) False LOC110528966
TU708601 other downstream 381893 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 2746184 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 3398568 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 3768443 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 4407476 49295255 ~ 49297248 (-) True mustn1b
TU711185 other upstream 1353029 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 1445042 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 1714006 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 2971873 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 3115135 56834585 ~ 56835092 (-) True G627314

Expression Profile