RNA id: XM_021608275.2


Basic Information

Item Value
RNA id XM_021608275.2
length 625
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110527121
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 53774355 ~ 53775511 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGTCAACCCTTTAAAAGGCAGAAGGGAGATGAATGGAGAGCAGAGAATGAGGTGAGACAAccttccaaacacaccaacaacaGCAAGACTAAAGGCTCAAAGCAAACCTGTCAAAATACAAGATGAAAACCATTCTCTCCATTGCTCTTGTGCTCTTGGCTCTCTATCTGGTCTCTGAAGCCCATGCAGTCCAAGTCAAAGTGCAGgAGGGCGACTTTGTTTTCTCACTGGAATCAGTGAAGAAGCTCCAAGAGCTGACAGAGAGCAGCAGTGTAAACGGGAAGCAGAATCCTCATCTCGCCAGCACCAGCTTTGCTTCCGTCTGTGCTAACCCCTCCCTGCCACAGGAGTTCATGCCCCTGTGCATGCAGAGAGGGGCCAGCATGTCTCTCTCAAGACTTGCTACTATGCCTATAGACATCTGTGAGATATGTGCCTTTGTTGCCTGCACAGGCTGTTAGGCAAGATATCAACCTGACTGCCAGCAGAAGACAAGCCACCCACATTATCATTCTGCATATTATGACAACAATGTGGATTTCATGTCTTCAAATTGCCATCCTCAGACATGATTGGCCCAAAAGATAACTGGACcagaaatgtagaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU708843 lncRNA downstream 8723 53765346 ~ 53765632 (-) True G623198
TU708837 lncRNA downstream 12769 53761311 ~ 53761586 (-) True G623192
TU708824 lncRNA downstream 21890 53752257 ~ 53752465 (-) True G623179
TU708823 lncRNA downstream 22399 53751671 ~ 53751956 (-) True G623178
TU708822 lncRNA downstream 23169 53750909 ~ 53751186 (-) True G623177
TU708887 lncRNA upstream 26396 53801907 ~ 53802189 (-) True G623240
TU709149 lncRNA upstream 146511 53922022 ~ 53922229 (-) True G623496
TU709150 lncRNA upstream 146829 53922340 ~ 53922590 (-) True G623497
TU709169 lncRNA upstream 179742 53955253 ~ 53955463 (-) True G623515
TU709177 lncRNA upstream 189324 53964835 ~ 53965052 (-) True G623523
XM_021609754.2 mRNA downstream 2475 53766066 ~ 53771880 (-) True LOC110527999
XM_021609749.2 mRNA downstream 41567 53704724 ~ 53732788 (-) True LOC110527997
XM_021609748.2 mRNA downstream 54905 53704724 ~ 53719450 (-) False LOC110527997
XM_036983534.1 mRNA downstream 54905 53704724 ~ 53719450 (-) False LOC110527997
XM_036983532.1 mRNA downstream 70398 53636783 ~ 53703957 (-) False LOC110527996
XM_036984488.1 mRNA upstream 44949 53820460 ~ 53835329 (-) True LOC110527124
XM_021609763.2 mRNA upstream 391040 54166551 ~ 54180404 (-) True LOC110528002
XM_036983545.1 mRNA upstream 419204 54194715 ~ 54198212 (-) False LOC110528966
XM_021609767.2 mRNA upstream 427163 54202674 ~ 54485211 (-) False LOC110528004
XM_021609765.2 mRNA upstream 427163 54202674 ~ 54485213 (-) True LOC110528004
TU708601 other downstream 451524 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 2815815 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 3468199 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 3838074 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 4477107 49295255 ~ 49297248 (-) True mustn1b
TU711185 other upstream 1296968 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 1388981 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 1657945 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 2915812 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 3059074 56834585 ~ 56835092 (-) True G627314

Expression Profile