RNA id: XM_021609767.2


Basic Information

Item Value
RNA id XM_021609767.2
length 3093
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110528004
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 54202674 ~ 54485213 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGATAGAGCGcgcaggagagcgagagagagagagagagagagaaagagggagatacgCATTGACTGAGAAACATAGATTTTCATCCAACCTATCTGTTTTTTCTAATCCTCGACTGCACTGCTTAACGTTGATTGTCTAGCAGGACAATATTTTGTATTAGCCTATTACGTCGTTTCTTTTGACGAATATTGGTCCTCATTGCTGTAATTTAAGTGTATTTGTGGCGAACTTCTCATATTTCCCATTTATACTTAAACTGCATCATGAATAGTTTGTGGGCACCTCTCGATCTCATACCTTTGGAATGGTGGGGATTACACAGCCGAAAAACGGGGAGCATGTAAACGCGGATGGAGTTTGGGATTTATTGCAAAATAAGGGAAAGATGACTGTCTTCTCTTTGTGTCTCCTATTGTGCGCAGATCTACTGGATTTAGCTGTTGGATATTTGACAGTAACCATTGAGCCCCTTCCTCCTGTTGTTGTGGGAGAGACTGTCACCCTGAAGTGCAACTTCAAGACTGATGGAAGACTTCGAGAGATCGTATGGTATAGGGTCACAGACGGGGGCACCATTAAGCAGAAAATCTTCACCTACGATGCTATGTTTAATACCAATTACTCTCATATGGAGGACTACCGCAAACGGGAAGACCTTGTCTACCAATCTACAGTCCGGCTCCCGGAGGTACGGATCTCGGACAATGGACCGTATGAATGCCACGTGGGCATCTACGACCGAGCGACGAGAGAAAAGGTGGTCTTGGCATCAGGAAACGTCTTTCTCACCGTTATGTCACCTCCAAACAACATCTCAGTTTCGGCAGAGAACTGTCCAGCTCCATTCAGCCGGTACCAGGCCCAGAACTTCACACTGCTGTGCACTGCAAAGGGAGGCAAACCTGCACCTTCAgtgtacTTTAAGCGGGATGGAGAGTTGATAGAGGTGATATCCTACATCCACCCCTCAGCCGAGGACGGCGGTGGCTCAGCAGGGGTGCGTGGTGCCAGGCCACTCATTAGCAGAGACCTGGACGACACCAAGCTGCAGAGGTCCCTCTCCCTGTTGGACCCCGAGGGCCGGCCAGCCCGCATGTTCACCGAGAGCCCTGAGCGTCGTTGGACTCCGGGCCAGCACACCCAGGGTCGGCAGCAGAAGGAGCAGCCCAGCCCTGCCACGGAGATCATTCCAGAGACAGTTGTGAGCCGGGAGTTCCCTCGCTGGGTCCAGAGCACTGACCCACTCTACTACTTCAGTCACACCCACATCTCCCAGAGTGATGGCTCTGTGCTGGTGCAGGCCAGACTCACCTGGACCCTTAACCCCCAGCTGGACAATGACGCCATGTTCAGCTGTGAGGTCAAGCACCCAGCACTCTCCATGCCCATGCAGACAGAGGTCACACTGGcggCTCCTAAGGGCCCCAAGCTTTTGATGACCCCCACCAGGGCAAAGGTAGGGGATACGGTGCGCATCACCGTGCAAGGATTCCAGAATGAGGTGTTCCCTGAGCCCCTCTTCACCTGGACCCGGGTCGGGGGCCGTCTGCTTGACGGGAGTGCTGAGCGGGATGGGAAGGAGCTGATTCTGGAGCGAGTGCCAGCCGAACTCAACGGCTCCATGTACCGCTGCACGGCCCAGAATCCTCTGGGCTCCACGGACACGCACACCCGCCTCATCGTCTTTGAAAATCCTGCCATGATGAAAAACACTCAGAATCCGAACAATGGAGCCCCTCGCGTGGATGTAGTCGGACTAATATGGATGGTGCTGTCCCTGGCCCTCACAGTGACTGTGGAACTGACGTGAACCCTCCCAGCCAACACACactctgtatacacacacacaacacacagtagacccacagagacacaaacacacacaaacaatcccAAGCCtttccaacacacatacacacaccacatacacatacCACAAGCCcaaaacaccaccacaccacaaacagacacacatacaacCACACCACACAGTCCTGCAAGCCTTTTCCAGTCATCCAACCTGCCCTCCATGCATCAGTCTTTCAGGAACCAGTGCCACCACCCGATGGGCCTCTACTCTGTTTTTGAAATGAAATAATAACAAAGATtataatataaagaaaacaacTTCCTGAACATGAGAATAACCACCTCCAGTATGCCCCTTCCCCCGACCACACCTTCTTTTTGTTTCTTGTCACACCTCTGCCTGTTGATCAATAAAATTAGTTGttaaaaaaggaaaataaaaagcATTTGGGTTTGTTTTGATATGTTCAAATGTTGCAAGTGTGAAGAGAGACACTGAGCCGACGAGTGTGGGAGGGCCAACCAGTTGTCCCATTCACTGGGCTGTGTTGTACCCAGTCTTTAAGCTACACATAAACAACTGGGAACAAATGTGAACGCTCAATGAGCACGTTATTTTTTATCACGATTACAGGTATTTCTTTTCTTGGATGGCTTGGAATGTACAAGAGGACTAAACGCAAAGAGAAAATGGAAAATCTCCTTTTTGAGTGTATTTTGTGTACATCTGTGTAAATATTGAAGATAATCAAAGAGGTTTTATGGGTTCAGGTTAGGATTGGTTGGTGAAGAGTTGGGAGGGTTTGCAGCAGCTCACAGCCTTTGTTTGTATTTTCTCATCCTTTATCGCTGTTTCAAGAGATAATCCTATAGGCTGTCAGGACAGAACAGTTTACAGCCTTCTGATCCCATTCATTCAGTCTCTACATCTGTGTGACAAGTTTGAAAATGAGGACAGAAAAAAACAATGCAAATATCCTACATTATGTCTGCCGTTTTGGACTTGTAGTGCATGTGACGTTTGACAATTCGTTCTCCTTTTCGTGTTTTGCAGTGGTCAACACTGCATCTCATTGTCACTGGCCTGTAATCCAGTTATTTACTTGTTACATACTTAAGTGACATTGCATTATGTACAATATGTAACTCTTCCCCCTGACATCTCCTAGTAGGATCATGTTAGCCACCATTTCAGGAAGATGCTCACCTGAAGCAGAGTGCTAACAGGGTTGTTGCATTTGTTTCATATCACCTGTATTAAAATGGAGAGATTATCAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU709438 lncRNA downstream 4573 54197884 ~ 54198101 (-) True LOC110528966
TU709437 lncRNA downstream 4875 54197545 ~ 54197799 (-) False LOC110528966
TU709435 lncRNA downstream 5210 54197201 ~ 54197464 (-) False LOC110528966
TU709434 lncRNA downstream 5555 54196767 ~ 54197119 (-) False LOC110528966
TU709420 lncRNA downstream 6155 54195814 ~ 54196519 (-) False LOC110528966
TU709877 lncRNA upstream 16411 54501622 ~ 54501860 (-) True G624191
TU709964 lncRNA upstream 36719 54521930 ~ 54563391 (-) True G624276
TU710015 lncRNA upstream 96370 54581581 ~ 54581817 (-) True G624326
TU710219 lncRNA upstream 230170 54715381 ~ 54715671 (-) True G624523
TU710483 lncRNA upstream 331468 54816679 ~ 54816976 (-) True G624783
XM_036983545.1 mRNA downstream 4462 54194715 ~ 54198212 (-) False LOC110528966
XM_021609763.2 mRNA downstream 22270 54166551 ~ 54180404 (-) True LOC110528002
XM_036984488.1 mRNA downstream 367345 53820460 ~ 53835329 (-) True LOC110527124
XM_021608275.2 mRNA downstream 427163 53774355 ~ 53775511 (-) True LOC110527121
XM_021609754.2 mRNA downstream 430794 53766066 ~ 53771880 (-) True LOC110527999
XM_036983546.1 mRNA upstream 322438 54807649 ~ 54961056 (-) True LOC110528967
XM_021609769.2 mRNA upstream 513230 54998441 ~ 55036497 (-) False LOC110528005
XM_021609771.2 mRNA upstream 513230 54998441 ~ 55036497 (-) False LOC110528005
XM_021609773.2 mRNA upstream 513230 54998441 ~ 55036497 (-) False LOC110528005
XM_021609768.2 mRNA upstream 513230 54998441 ~ 55036498 (-) False LOC110528005
TU708601 other downstream 879843 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 3244134 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 3896518 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 4266393 49660035 ~ 49936281 (-) False LOC110527961
TU702832 other downstream 4905426 49295255 ~ 49297248 (-) True mustn1b
TU711185 other upstream 587268 55072479 ~ 55075396 (-) True G625426
TU711245 other upstream 679281 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 948245 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 2206112 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 2349374 56834585 ~ 56835092 (-) True G627314

Expression Profile