RNA id: LOC110528008


Basic Information

Item Value
RNA id LOC110528008
length 3778
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC110528008
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55079890 ~ 55101228 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGATTTACAGAATGGTGACCAAGACCACCAACGGCAGATGCTCACGTGTTTTTTGCAAATATGAAATAAGGTGAAGAGAGGAGACGGATATTAAGGGTCACGTGAAAGGAGTCAGGCTGTTGTCCCATGGGTTGTGTTTCTTTCCCGGTTAGGAGGTATTGAGAAGTTTTGAGTGTGAAGTTTAACAATTATTTATGAAATCCTCAAAAACCGAAGGGGGCCTAACTACATCCGTATTGGCCTGAAATTATGGAAATTCCTGCCATAAACCTCAAGGCCATAGTACTGGTGCACTGGCTTCTGACCGTCTGGGGTTGTATGGCCTGGCTGCCCCCCTCTTATGCCTGGGGTAACTTCAGTGTCCTGGCTCTGGGTGTGTGGGCCATTGCTCAGAGGGACTCCATTGATGCTGTACTTATGTTTCTGATTGGTATTGCAGTGACGATACTGACAGACATCATCCATTTTGGGATCTACTACCTGCTGCCCGAGGGTCTGAGAGGAACCGGGACACATTCCGCTTCAGTGCGGGCATGGCAATCCTGGGCCTGCTACTCAAGCCTGTCTCCTGCTTCATCATCTACCAAATGTACAGAGAGCGTGGAGGAGATTACAACTTCAACTTTGCAGGCTTCCCCAGTGTAACACGAAACAGAGATGCTTACCAGTCCATTGACCAGCAGGACCAGACAACCAGCTCAGCCAACCCCTTCAACCAGGCCAGGGACACCAAGGCTGGAGCAACAAACTCCTACTGAGAGCCAGCACAGCACTCACTTTATTCTCATGGAAATGCATGTTTTCATGAAGGAATCCATGTTTTTGTTCAATTGTGTTTTTTCAAAGCCAATTCAGTCTTCCTTTCATATGGGTATCTGTGAACTGTAAGAGTCATTTGTATATTATTCTGTGCTTCATTCAATTCCTTACCAATAATGTCCTGATCTAAATACATACTGTCGTGGTAAAATATGACATGTACAGTATGCTTGATGCTCAGGGTAATGTCACATACACTGGCATATGGAGAGAACTTGAAATACCTCAGTCACTGCATAACAGTAAAATGAGAGCTGTGATTACATTTGAGATGTAATGGTACGAAAtcactaaccacgtttccatccacagtttttatgtgaGGAAAGTCCTACGGAAAACAAAGTGTCATGACATTTTTCTAAAGAACAACAGATAATGTGCTCTTTCtacactagctaggtttccatccgattggcgacagattttcttGGGAGTATTCCAAAATCCGCATAAAGAAAATctgtgcattttcccaccagtggtgttccCACCAAATGGACTGGTGGAAAATAAAAATCAGTGAGTGATGACATAGTGTATGGAGGTACATTTGTCCAAAACTTCAATTTCATTTTGCTATCAACCACGCTCCATTTTGGCTAGACTGCCCCATTTGCTTGCAgtgcttctttaaaaaaaaaaaaaaatgtttaaaaactttttttgttgttaaaaACACAAGTCTTCTTTTGCACTTTTGACCCCACAGCTGTGGGTGGGCTTTAGTGAGAGGTGTGGATGATGCTTCTCCATTGGTCAGACATTTTTTTGAGTGTCAGTTTGGCTACAACCAACTGTTCAGCCTTTCTTTCCAACACAAAGGAAGTCATTGCGTACACTTATGAAGAAGGACTGTGTGAtgatctcaggtaagcagcactagGTCTTCTTCCGTCCAACTTCTACATAGCTAGTAGTTCGCTCCTACGATTGTGTCGGTTCATAACATTAAGGTGTTTCCACAACCATTTCTCGCTTAAATCAATTTACtgacaaaaagatcccaccatgtagAAAGAACAAATGATCTGTCGACATTTATCAAATTGTACTGAAACTGCTTCCTTCACAGCTGTCGTGATTTGTTTTATATGGTATGACTTTATGTGCATAACTGGATGGAAAAGttatggtgggatctttttgtgtgtAAAATTAATTCTGCGAGAAATGGCTGCTGAAACGACTTTATGGTCAAATatttatataggcctaataaccatcatattgaagtaaacttggagtcaggTGATGATTTGGTGTGTGGACCGCTATGACTCGAGGAAACTGCAGTTTATTAGTCTACAGATGAGAGAAATTATGATTTGATTATATTTATTAGGATGAACCATTAGACAAAGCCAAttgcgacagctagtcttactgggatcCGACGTATAACAAAAAATACATAAATTAATTCATGGGGTTGTGAAAGTGCGAGTTGATGAGCTCGAGGGTCTTATTGTGGTGACATCCTTGTGGTGACATCCTTGTGCCATGTCTGAAGAAAGATCTTTGTTGTCATAATCAATGTTCCCCCTAAGCTCCGAGTATGTGTGGGAAGGCAACTCCCCCAGGACTGCCtcacagaagaaatatcagctcGACCTGCGCAGAAACGCACGAGATTAAACTTCACTGAACTATCTAGTTTTCCCTGTTAATACCTGTCAATGTTTCCCTTTACAGTAGGAACTGTGAttgaatcaacgcaatattatctactttcaatgcaacataatgaagcaaaaacaaactatgcaagacttTTTATGCAAAACTGTTGTAGTCATTATGTGTCAGAGTAGGATTCTGTTGCATTGACAGGCAAGACTCAggccgtactctacacagaccggtgcaccATAACCAATCAGCTGCAGtaagcctatatgcaaatagaccattgccatatatggatcagtgccattcactttgaactggactgtttttACAGAATGAGCTTGTCTTGAGATCAAACCGAGAGCTACATGTAGCACAGTGTACACGTtcgttcatatcctttgctagtgagttattagcccagtcaaatatcatttgtagtcagcaatgggggagtgattgcttcctacaagagcacaaaatgtgtgcacttctagacatctttgaaaaagAGAGTCTGGTAAATAGCTTTTTTTAGTCTTAaaagggcagtgttgtattttgagacaggcttgaataagctaagttgCCAATAGGCAGaaggtagcataatttgtctgattctcttaTATGGGAATAATGgtgcattttattttgttaagTAATTTCTTGCATCAAGCAACACAACTAAATGTAAGTCACTTTTCTGAAAGACAAGTAGATagacaggttaatgtcaagcccttcatgttttttctctcaaattatttaaactgtaggcctacattgaacaccataCTTTGattgctactgtaggctgaatgatagaacagctatttccatgttagcatgtcatgggatgcattttcatcaaatagccacagtagcctacttgaacCCTGTTATAACTGTAACTTAAAgatgggtacagcctcagtgttcacagtaaacgagTGCCAGAGGTTCCACAGAATTctcacaatgttcaagtttgcactcagcagacctgaaatttgcttgTGTACTTTTTGAAATCAGACTTGTATCTctgtctgaacacacagtatGAGATGCTTCCCACTGGGCAAagatgtcaattcaatgtcttttccatgttggttcaacgaaatttcattgaaatgacatggaaacaacgttgactcaaccagtgtgtgtgcccagtggatTGGTGCCTTCCATACCGTCTGGGTTAAAGCTATAATCTACAGTTGAAACAATAGCAAAGCGCCACCCTGCCTCtgatttggtaaaaagctgagggaccaagctttaatttcctgactgatgtcttcagatgttgcttcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU711162 lncRNA downstream 33893 55044189 ~ 55046091 (-) True G625404
TU711168 lncRNA downstream 37110 55042455 ~ 55042874 (-) True G625410
TU710478 lncRNA downstream 105546 54974192 ~ 54974438 (-) True G624778
TU710598 lncRNA downstream 108002 54971726 ~ 54971982 (-) True G624892
TU710595 lncRNA downstream 111113 54968666 ~ 54968871 (-) True G624889
TU711235 lncRNA upstream 59777 55161005 ~ 55162187 (-) False LOC110528015
TU711233 lncRNA upstream 60322 55161550 ~ 55162187 (-) True LOC110528015
TU711271 lncRNA upstream 69166 55170394 ~ 55170660 (-) True G625477
TU711241 lncRNA upstream 69834 55171062 ~ 55188756 (-) True G625472
TU711159 lncRNA upstream 127372 55228600 ~ 55231756 (-) True LOC110528018
XM_021609774.2 mRNA downstream 27197 55047293 ~ 55052787 (-) True LOC110528006
XM_021609768.2 mRNA downstream 43486 54998441 ~ 55036498 (-) False LOC110528005
XM_021609770.2 mRNA downstream 43486 54998441 ~ 55036498 (-) True LOC110528005
XM_021609769.2 mRNA downstream 43487 54998441 ~ 55036497 (-) False LOC110528005
XM_021609782.2 mRNA upstream 5521 55106749 ~ 55132386 (-) False LOC110528010
XM_021609783.2 mRNA upstream 5521 55106749 ~ 55132386 (-) False LOC110528010
XM_021609786.2 mRNA upstream 5521 55106749 ~ 55132386 (-) False LOC110528010
XM_036983549.1 mRNA upstream 5521 55106749 ~ 55132386 (-) False LOC110528010
XM_036983550.1 mRNA upstream 5521 55106749 ~ 55132386 (-) False LOC110528010
TU711185 other downstream 4588 55072479 ~ 55075396 (-) True G625426
TU708601 other downstream 1757153 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 4121444 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 4773828 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 5143703 49660035 ~ 49936281 (-) False LOC110527961
TU711245 other upstream 63264 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 332228 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 1590095 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 1733357 56834585 ~ 56835092 (-) True G627314
TU713320 other upstream 1745734 56846962 ~ 56852301 (-) True G627323

Expression Profile