RNA id: XM_021609780.2


Basic Information

Item Value
RNA id XM_021609780.2
length 4037
RNA type mRNA
GC content 0.46
exon number 20
gene id LOC110528009
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55132795 ~ 55158158 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTGGAGCCGGGCCATGGACGAttcaccatgctgccttgttgacaacatgaccgaGCTGTGGTCAAGTGGGTCATGTCAGCCAGGCTACGAGCGGCGCAGAACAGCATTCGATTGAGACAGGCGCTCATCCTGCCCGTTCATGTCACGGGCTATAGTCAGTGTGCCCCGCGGCTCAGCGTAATCGAATCCGCACAATGTCTACTTCCAAGATGGCGGCGGGATGTGAAAGAGTGGACAGTGGTCACAGCATGGATAAAAGCATAACTCTTCCACCCGACGAGATCTTCAGGAATTTGGAAAATGCAAAGAGGTTCGCAATAGACATAGGTGGATCTCTGACGAAACTCGCCTATTACTCCACTGTTCAACACAAAGTAGCGAAAGTACGGTCATTCGACCATACTGCAAAGGAGACTGAGGGTGACCCCCTCTATGAGATCTCTATGCAGGAGGAGATGTCGGCTCGCCTTCACTTCATCAAATTTGAAAATGCCTATATCGAAACCTGCCTGGACTTTATCAAAGACCACCTGGTCAACACTGACACCAAAGTCATCAAAGCCACCGGTGGAGGGGCTCACAAGTTTAAAGATCTCATAGAGAAGAAACTGAAACTCAGGGTGGACAAGGAGGATGAAATGACATGCCTGATCAAGGGCTGCAACTTTGTGCTGAGGAATATCACCCATGAGGCCTTCGTCTATGTCAAGCATGCAGACTCTGAGTTCCGCTTCCAGAACACTCACCCTGACATTTTCCCTTACCTGCTCATCAACATCGGCTCAGGGGTGTCCATTTTCAAGGTTGAATCAGAGGATACATTTGAGCGTGTTGGAGGAAGCTCCATAGGTGGGGGGACATTCTGGGGCCTTGGAGCATTGCTCACAAAAACAAAGAGGTTTGATGAACTCCTTCAGTTGGCCTCGAAGGGGCAGCACACAAATGTTGACATGTTGGTCAAAGACATCTACGGGGGATCTTATGGGTCCTTGGGCTTGACTGGGGACCTTATTGCAAGCAGCTTTGGAAAATCTGCTACTCCTGACAAAGAGTTCTCTAAAGAAGACATGGCTAAGAGCCTGCTCCATATGATCAGCAATGACATTGGGCAGCTGGCCTGCCTCTATGCCCGGCTCCACAACTTGACCAGGGTCTACTTTGGGGGTTTCTTCATCCGAGGACACCCTGTCACTATGCACACCATCACTTACAGCATCAACTTCTTCACCAAGGGTGAAGTCCAGGCACTCTTCCTGAGGCATGAAGGCTATCTGGGGACTATTGGAGCCTTCCTTAAGGGAGCAGAGGAAGACAATCCTAACCAATACAGTTGGGGGGAGAACTATGCTGGGAGCTCTGGCCTTATGAGTACTTCTCCTGACCTGAACCCCATGCAACGTGCACGTAGTGGAACATTTTCCTTTGACATGTTGGAGATGGACCGTCTGGAGAGGCAGCTGGTGAATCTGCCCCTGCTGCAGGACCCGTCCTCCTACATCCCAGACACAGTGGACCTCTCAGAGGACGCCCTTGCACGGGAGTACTGGCTCTACTGCTTCGAGGAGGCCCTGGATGGGGTGGTGAAGAGAGCTGTTGCCAGCCAGCCTGATCTTCCAGAGGCCGCTGAACGAGCAGAGAAGTTCCGTCACAAGTACCAGCACAAGCTTCAGACCCTCCGCCACCAGCCTTTTGCTTATGGATCCCTCACTGTAAGAAGTCTGTTAGACACAAGAGAACACTGTTTAAACGAGTTCAACTTCCCTGACCCATACTCAAAGATCAAGCAGGGGGAGAACGACATGGCCCTCAAGTACTTCCAGAAGGCAGTCAAGTCCCTGGGGGAGCTGAGCTGGGAGCAGAGGCAGTTTGCCCTGGTCAGGGGCCTCCTGGCTGGGAACGTCTTCGATTGGGGAGCCAAGGCTGTATCGGATGTTCTGGAGTCTGATCCGGAGTTTGGCTTTGAACATGCAAAACTGCAGTTGGAAGAGCGGCCGTGGCTTGTGGATGCCTATGACCAATGGCTCGAGAGACTGAAGGGCCCACCTCATAAGTGTGCATTGTTTTTCGTAGATAATAGTGGAATAGACATCATACTTGGAGTGTTCCCATTTGTCAGAGAGCTTATCTGCAGGGGAACAGAGGTTGTCCTTGCCAGCAACTCTAGCCCAGCTCTGAATGATGTAACAAACAGTGAGCTGCAGATCTTGACTGAAAGAATAGCTGCAATGGATTTAGTCATACAGTCTGCTGTGAAGGAGGACAGGCTGACGCTAGTCCAGAGTGGCTCCAGCTCTCCTTGCTTAGATTTGAGCCGTCTTGACAAGGTGTTGGCTGGGGTTGTGCGAGAGCGCCATGTAGACCTGGTGATCATCGAGGGCATGGGCCGGGCCATCCACACCAACTACTACGCCATATTGAGCTGCGAGAGCCTCAAGATGGCTGTCATCAAGaactcctggctggctgaccggCTGGGGGGCAAGCTCTTCAGCGTGGTCTTCAAGTATGAGGTGCCACCAGGCCACAAAACCACCACCCTGGATCATGTTCCAGTGACACCTTCATAATCTCTCTCTTTTTGAAGTCTGATCATGGGacaggttgaggtactagttggagAGGTCCAGTTGGCTGTAATGGGGTTGATTTGACCACCTCGTGATGATTGTACAGGGAGGTGTTAAGATAATCAGTGGACTTGGGTTGATTTGAAAGCTTAGTAGGTTAAAGCAGAGTATAACATTTCTTTGTAACACCAGAatgtttaaatgtctttattttttgaATATACAGCCATACTTTGCACCATGTTGTGTGTTCTTGTAGATCACATCTTAAATTATAGTTAAGGTATCAGAACAGACAACGGTTGTCAGTGGTAGAGGTGTGCACTCTTTGTAGATTGACTGTCAATGCTGGTGAGATACTCTACTGAGTGCATTTATAGACAGGTTATCATCAGTACCCTGCTGTTTACACACAGCATCCCAATGGTTACCATGACAACGTGTCCCTTTCAGTGGTGGAGATGCTTTGTGTGTGGCTTGCTACCAGGGTAATTACAGTAATCGGTGGTGAAGCAACACAAAAATATGGTAACTGTGCCTTAAGGTTGGAGTGATAAAAAGCATAGCTTGTTCAAAATGCAACCAACCTGGTTTCATTTCTCGTGTAGGGAAAGCATGGACGTTTGTTACCTTGGGCTACATGAGTGTCTTTTCTTTGATTCCAGGAGTTGCCTCCATCACTGCCACTAGGTGAATTGAGATTATTTACTTAATTGTGTGATGATCATTGTCTGAGAAGCTAAAAATGTTGCTACTGGGAATTTTGTTTGAAAAGAGTGGATAATAGCACTTTATTGATGGGGTTAAAATGATTCTTAAAATTCCAGAAGGTGGCAGTATTTTACTGTGAAATATGTTCCTAACAACCCAAACTAAATGTGAAGTATATTTTGTTCAATGGACGTTTTGAAAGTGTTGTGTCAAACTCAAAATGTGTATTTCAGGTAATTTTATTGCAAATGTTTAAGCCGTCTTTGTGTCATTATCATTTTGTTGGTAGCCTTAGTAAATTAAGTCTGCTTCCAAACAACTAAAACATTGAAGTTGTCAAACAGTAGGCTAACCACTGTCATTAACAAAATGTTGTGTAAAAGGGATTTACTTTCAATTCTTAAAATAGTTTAAACTAAGGCAATAACAGATCTGCGCTTTATTAAAGTAATGCTCTGGGTGATTGGAGGTGACAGTATTTGATGGTTAATTTACTTACTGATGATACTCATTCATACTATCTTTATCAAACCAGGTGTCTGAAATGTAGGTTGAGGTCTTGCTGTCCAAATGTTTCCATGGCTTTTTGCTTAACCTGTGAACTCACTTTGCGATATTGTATTATCATTTGTGTATATACATGATAAATAAGTGTTAATATAATTAATTTGCGTTAAGAGTTCATGATGCTCCGAAATTATGGAAAGTATTTTGTTCTATTGACAATCACTTTGATTTAAATCTGAATATATTTTAA

Function

GO: NA

KEGG:

id description
K24265 PANK4; bifunctional damage-control phosphatase, subfamily II, fusion protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU711163 lncRNA downstream 31678 55079890 ~ 55101117 (-) True LOC110528008
TU711172 lncRNA downstream 34518 55097743 ~ 55098277 (-) True G625414
TU711162 lncRNA downstream 86704 55044189 ~ 55046091 (-) True G625404
TU711168 lncRNA downstream 89921 55042455 ~ 55042874 (-) True G625410
TU710478 lncRNA downstream 158357 54974192 ~ 54974438 (-) True G624778
TU711235 lncRNA upstream 2847 55161005 ~ 55162187 (-) False LOC110528015
TU711233 lncRNA upstream 3392 55161550 ~ 55162187 (-) True LOC110528015
TU711271 lncRNA upstream 12236 55170394 ~ 55170660 (-) True G625477
TU711241 lncRNA upstream 12904 55171062 ~ 55188756 (-) True G625472
TU711159 lncRNA upstream 70442 55228600 ~ 55231756 (-) True LOC110528018
XM_021609783.2 mRNA downstream 409 55106749 ~ 55132386 (-) False LOC110528010
XR_002474180.2 mRNA upstream 2764 55160922 ~ 55162246 (-) False LOC110528015
XM_021611133.1 mRNA upstream 37696 55195854 ~ 55196454 (-) True LOC110528968
XM_021609790.2 mRNA upstream 43981 55202139 ~ 55204250 (-) True LOC110528016
XM_021609791.2 mRNA upstream 51424 55209582 ~ 55225927 (-) True LOC110528017
XM_021609794.2 mRNA upstream 71563 55229721 ~ 55309125 (-) False LOC110528018
TU711185 other downstream 57399 55072479 ~ 55075396 (-) True G625426
TU708601 other downstream 1809964 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 4174255 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 4826639 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 5196514 49660035 ~ 49936281 (-) False LOC110527961
TU711245 other upstream 6334 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 275298 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 1533165 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 1676427 56834585 ~ 56835092 (-) True G627314
TU713320 other upstream 1688804 56846962 ~ 56852301 (-) True G627323

Expression Profile