RNA id: TU711233


Basic Information

Item Value
RNA id TU711233
length 525
lncRNA type sense_over
GC content 0.50
exon number 2
gene id LOC110528015
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55160922 ~ 55162246 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGACCTCTACAGCACAGGGATCCAGCCATGGAGCCTACAATCACTTCAGCAATGACCTACTATAAGGACCACCTGACTGACCAAAAAGAAAGACAGTGGTGGGGAAGTTATTCAGAGATCGTATCAACAGCAGCATTGAGCGGCTCAAGTCTCTCCTGGGTCCAGAGATCCTCAATCAGCAACACAACTTCCAGTTGGAGAAAGCAGACATCCTGGAAATGAGTTTGCTTCCTGAGAGGACGGCAACACATCCAGCGAGTGAGCTCCTCCTTATGCTCAGCACCTGTCAATCAGGGTTACTCCAGATGTGTCCAAGAGATTGTACACGTCTTGTCCAAGGATGAGGTGAAGACACATCCCAGAGAAGACTGCTGAGCCACTTCCAGATACTTCAGCCATCCTCTGATAAGAACAGAAGGGAGAGTGTCCTGCCTCAGGCAACAGCAAAGAGAAGAGTCCAGTCAGTAGCGTCCATTGGAGGCCCTGGTAGAGTCCTACAGTCTGGAGCTCCACTCATAGAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU711163 lncRNA downstream 60433 55079890 ~ 55101117 (-) True LOC110528008
TU711172 lncRNA downstream 63273 55097743 ~ 55098277 (-) True G625414
TU711162 lncRNA downstream 115459 55044189 ~ 55046091 (-) True G625404
TU711168 lncRNA downstream 118676 55042455 ~ 55042874 (-) True G625410
TU710478 lncRNA downstream 187112 54974192 ~ 54974438 (-) True G624778
TU711271 lncRNA upstream 8207 55170394 ~ 55170660 (-) True G625477
TU711241 lncRNA upstream 8875 55171062 ~ 55188756 (-) True G625472
TU711159 lncRNA upstream 66413 55228600 ~ 55231756 (-) True LOC110528018
TU711336 lncRNA upstream 151317 55313504 ~ 55314949 (-) True G625531
TU711365 lncRNA upstream 197637 55359824 ~ 55360081 (-) True G625560
XM_021609780.2 mRNA downstream 3392 55132795 ~ 55158158 (-) True LOC110528009
XM_021609781.2 mRNA downstream 3395 55132795 ~ 55158155 (-) False LOC110528009
XM_036983548.1 mRNA downstream 4862 55132795 ~ 55156688 (-) False LOC110528009
XM_036983550.1 mRNA downstream 29164 55106749 ~ 55132386 (-) False LOC110528010
XM_021611133.1 mRNA upstream 33667 55195854 ~ 55196454 (-) True LOC110528968
XM_021609790.2 mRNA upstream 39952 55202139 ~ 55204250 (-) True LOC110528016
XM_021609791.2 mRNA upstream 47395 55209582 ~ 55225927 (-) True LOC110528017
XM_021609794.2 mRNA upstream 67534 55229721 ~ 55309125 (-) False LOC110528018
XM_021609795.2 mRNA upstream 67534 55229721 ~ 55309125 (-) False LOC110528018
TU711185 other downstream 86154 55072479 ~ 55075396 (-) True G625426
TU708601 other downstream 1838719 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 4203010 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 4855394 50304448 ~ 50306156 (-) True LOC110527964
TU703492 other downstream 5225269 49660035 ~ 49936281 (-) False LOC110527961
TU711245 other upstream 2305 55164492 ~ 55172200 (-) False G625472
TU711411 other upstream 271269 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 1529136 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 1672398 56834585 ~ 56835092 (-) True G627314
TU713320 other upstream 1684775 56846962 ~ 56852301 (-) True G627323

Expression Profile