RNA id: TU710810


Basic Information

Item Value
RNA id TU710810
length 494
RNA type TUCP
GC content 0.51
exon number 2
gene id LOC110527126
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55207615 ~ 55208708 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACATCCGCAACTATCTTTACTAAGAGCAAACATCAACTGACCAACAGCAATGGCTCCTGTCAATATGTGCAACATTGTGAGGACCACGAAAGATAAAATCAAACTGAGAAAACCAGTGGTCGAGAAGATGCGCCGAGACCGCATCAACAGCAGCATCGAACAGCTCAAGTCACTCCTCAAAACCGAACTTCAAGCACACCAACCCAACTCTAAACTGGAGAAGGCTGACATTCTCGAGACAGCTGTGTTTTACCTGAAAGACAACAGCACGCGCCCTGCTTCTTCATTCAACGTAGCGTCACCCGTCCAGAGCTACGCGGAGGGATTCACCCGCTGCCTGGAGGAGACGCTGCGTTTCCTCTCAGCGCACAACCAGCCGACTGACTCGCAACATAAGCTTGTCGATCACTTCCATCGGGTACAGAAACTTGGTGAGAGAGTCGCGCTGAGTCCAAACCGGGCGACGGTCCCTCACAAAAGCAGAACTCCGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU710780 lncRNA upstream 13382 55193527 ~ 55194279 (+) True LOC110528014
TU710779 lncRNA upstream 35947 55164275 ~ 55171714 (+) True G625042
TU710787 lncRNA upstream 37015 55170352 ~ 55170646 (+) True G625050
TU710777 lncRNA upstream 42254 55164275 ~ 55165407 (+) False G625042
TU710726 lncRNA upstream 103776 55103587 ~ 55103885 (+) True G624999
TU710827 lncRNA downstream 20414 55228677 ~ 55230776 (+) True G625085
TU710828 lncRNA downstream 25877 55234140 ~ 55234456 (+) True G625086
TU710829 lncRNA downstream 26477 55234740 ~ 55235046 (+) True G625087
TU710830 lncRNA downstream 26846 55235109 ~ 55235333 (+) True G625088
TU710831 lncRNA downstream 27092 55235355 ~ 55235614 (+) True G625089
XM_021609788.2 mRNA upstream 8593 55197770 ~ 55199068 (+) True LOC110528013
XR_002474179.2 mRNA upstream 12599 55193493 ~ 55195062 (+) False LOC110528014
XR_005052710.1 mRNA upstream 27867 55178707 ~ 55179794 (+) True LOC118965383
XM_021609787.2 mRNA upstream 35461 55170794 ~ 55172200 (+) True LOC110528011
LOC110528012 mRNA upstream 41912 55164188 ~ 55165749 (+) True LOC110528012
XM_021609796.2 mRNA downstream 105185 55313448 ~ 55315903 (+) True LOC110528019
XM_036983552.1 mRNA downstream 124834 55333097 ~ 55416079 (+) True LOC110528970
XM_021609800.2 mRNA downstream 297143 55505406 ~ 55508166 (+) True LOC110528022
XM_021609802.2 mRNA downstream 503372 55711635 ~ 55714713 (+) False LOC110528024
XM_021611136.2 mRNA downstream 584028 55792291 ~ 55798284 (+) True LOC110528971
TU710695 other upstream 135274 55070632 ~ 55072387 (+) True LOC110528007
TU710684 other upstream 154973 55047296 ~ 55052688 (+) False G624962
TU710686 other upstream 154973 55047296 ~ 55052688 (+) True G624962
TU710327 other upstream 383462 54823637 ~ 54824199 (+) True G624628
TU708825 other upstream 1453542 53753906 ~ 53754119 (+) True G623180
TU710771 other downstream 3442 55211705 ~ 55213911 (+) True G625038
TU710967 other downstream 264205 55472468 ~ 55472843 (+) True G625222
TU710986 other downstream 503410 55711673 ~ 55714711 (+) True LOC110528024
TU711835 other downstream 862791 56071054 ~ 56078929 (+) True G626004
TU712312 other downstream 1274131 56482394 ~ 56485304 (+) True G626417

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00002178 True 864 mRNA 0.58 3 CM030136.1 6258047 ~ 6262305 (-)