RNA id: XM_021609794.2


Basic Information

Item Value
RNA id XM_021609794.2
length 5314
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC110528018
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55228600 ~ 55309126 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttGTGTTTTTGCACGTGAGGGTACGTGACAGAGAATGGGAGGGTTGATGCGTACAGTGCCCAGTTTAGCAGTTTGCTTGAATGACCCAGCGGCGCCACAAAGAGGCAGGGGTAGGGCTGTAGACTAGTCTGTCATCACACCGCGGTACCAGAGTCCGGAGAAAGAAACGCGAATATGAGCAAAGACAGTGAGTGTGTCTAGAGAGAATGGGAAAGGGAGAAACTGAGCGCATAGGCCTACAGCATCTGAAAAAGCAGAGGCAAACGCACGGTGTGTCATATTCCTGCGTATAACAGAGGAGGATGGAGACTTTCCCGTTGCGCCAGAGATCTGGACTGATAAGATTATATGTTTGTGGATAGCCTACCAATAGGAAAAGGTGTTTTCTGGAGGTTTGAGGACAGCGAAGGTCCATCACCTTCAACTGCCCCGTCAATCTAATTTCAAGGAGCCACATCATAAGAAACTACCTGGAGAACTGGCATTTTGGAGGATATTATCGGTTTTATTGTTAAATTCATGtagcaaaacaaaaaacaaaaggtTTTATCATTTGTATGTTTACCAGTATGATGAACTCTTTTTTTGATTCTTCGCCTGCTGCTATGATTGCTACAATTCCTGTCAGCGGTATGTCCACTGCTGGGACGGGCGCTGTAACCAGTGCGCTTCGAAATGATTTGGGGTCCAATATTCACGTCCTGAAGACTCTGAACCTGCGGTTTCGCTGTTTTCTTGCCAAAGTTCATGAATTAGAGCGGAGAAACAAATTATTAGAGAACCAACTGCAGCAAGCCTTGGATCAACAACGATACCAAGTATACACTCGTGAAGTAGCTGTCCAAACCGACTCTCCTGAATCCCGACTGCCTGGTACCATTTGGAGTTTCACGCACGTGAGAAGACACGGAGAGCGCTATGAGACTCTCCAGGGCCCTGGTGTATCCTGGAATCATCCGGACGGTGTTGGGGTCCAAATCGATACCATCACCCCAGAAATACGAGCTCTGTATAATGTGTTGGCTAAAGTCAaacgagagagagatgaatacaAGAGAAAATGGGAAGAGGAGCTGAACAGACGAGAGCAGCTCGAGTCCTTGGTGGAATCCACTCAGGAGAGTGCCCAGGAGTCAGAGAAGATCCAGGATGAACTGAATGAGAAGGTGGAGAGGCTGAAGGCTGAGCTGGTGGTCTTTAAGAGCCTTATGAGCAATaAAATGTCCGACATGGACACTAAGATCCAGGAGAAAGCCACGCTGGTGGACATGGACATCTGCCGGCGCATTGACATCAGCACCAAACTGTGTGACGTGGCTCAGCAGTGCAACTCAGAGGACATGTTAAAGATGTTCAACGTGAGCCCGGCCAGGTCGCTCCCAGAGAGGggtgCCATGGCGTGCTGCAGGAAGAAGGAGTGCAAGCCTGTGTCTGACGAGGACAGCTCTGAGATGGATGCAGACCCCAGCACAAGTACCTCAGAGGAGGAGGTCCCGCTCAACGTTACTGACGAAATGAAACGCATGCTCAACCAGCTAAATTGTTCAGATGATAATTTTGTTGCCAGGAGGGAGACGTTTGACATTGATGATGACTGTGACAGCCTGACGTGGGAAGAGAATGACGAGACCCTGTTGTTATGGGAGGACTTCAACAACTACAACATACAACCCGGTGCCATCACCGCGGCAAACTGCACAGTCACCAGCGCAGCCAACAGCAACACAGAGGAGCCTGTCTCTCAGGATGGAAGCCTGGGCAGCCTCATAGACGAGACAGAATCACTATTCAAGACCAGAGAGCAGGAGTACCAGGAGACCATTGGCGCAAttgagatgGAGCTAGCCACAGCGAAGAGTGACATGAACAGACACCTGCATGAGTACATGGATATGTGTAGCATGAAGCGTGGTCTGGACGTGCAGATGGAGACGTGCAGGAGGATGATTAAAGGGGGCAGGaactctccctctgtcagttcGGTGGCTAGCAGCGACTCAGGGAACACTGACGAGATCCAGGACAAACTACTAGACAAGGATGGAGAGGCTGAGGTGCCAATCAGTTGATAGCCTGGCTCCACCCCCTTCCTCCCCTGTTCACTGACAGCTGCTCACAGAGCTCCACTCTGCTTGGGGGCTGACCCCAGTGTTCTGCCCTGCTTGGCATCCTTAGCCAAGGGGTACTGGTGGTCCTGATGGTCCCAATTGTCCTATGGATCTGGCCCACTGTCCCAGGCCCGGAACTGGTGCTTATTGTCTCTGTTCTCACAGGAATGAAGGGGGACGGGGTTCATTTGCTTCACAAGTGTTTTAAGGCAGAGGTGGTACATACAATATAGTGTCTGAGCTGTGCTCTCTTCCACAGTGCTGCACAGGAACATCCAGCAAAACAATCAACATGATCAAACATGTCATTCTGGCTCACTCTTAGCATAGTCTAAGCAGTTCCACTGTCACCACTGTCATTCTATTGGCCTGAGGCTGAACAGTCCATTTGGTGAACAGGGAACAAAATGCACAACATTACCAGTTAACATCACCAGTGAGAACATCTATCCTTTTGAGTTTTTTAATTATCACACAAAAAATCACAGATCAAGAGCAGTCACACTATTTTGTACTTGCATGTTCCCCATAGATGCAGATTGATCattcacatatactgtacatgcaaaTGTTCAAATGGGGATTGAAATGTTCTCACCAGAGTCAAAGCTAAAAAATCAGTTTGACTGGACTCTCCACAGTTACCAGGGTTGACTGGGGAACGGAGCACagccctttgctgctataatgcATTGTTCACATTCTATGCAATTTAGCTAGCCTTATTTCAGGATAACCTTTGACCTTCACTACCCCTCTTTTCCCTCATGATTTGCCTTTTTAAGCTGGGCAGGTGTTTTCTATCTGTTATTCAGAGTGCTCCTGTGTGTTCTCCAAAGTAGAAGAGCAATGGGAGGTGCAGAATTATCTCATAAAAGGAAAACTCCCTAGTGTCCTTTGTCAAAGGCACACCTTCTCCCCCTATCCATGTTAATTTAGAGGCTGTAAACATTTGAAAGGTTATCCAAAACAAAATGGAACAAGGTGCCAGCAAACATGCTGTCTTTGATTTGTATTGCCTTATGCTTATTACTATCATAGTAAGCTTCAGCTAACTTTAATCATTTCCCCTTAAATGTATCTAATTGGTAGAACTAAGTTATTGATGATTCCTTGGGCTACTCTTTGGTAAGTCCAAAGcagtggaagctgctgaggggaggatggctcgtgataatggctggaatggcgtgaatggaatggcatcaatggaaaccatgtgtttgatgtatttgatactaaTCCACCTATtcagctccagccattaccacgagcccgttctctcCAATTGAGGTGCCACCAACTTCTTGTGGTCCAAAGAGCTTTTGAAAGTTATTGGTCACCTGTTTGTTCTCTCAGAGATAGGGTACTGAAATGATATATTACATAAAACAATCACGGAATCAGGCAATACTATGAACATTGGTTAATGATACATTCCCTAGATTATACACTGAAAAATTTGGTATTTAGGATTTTATTTTGCCAATCTTGGATACTAAACTCAGATGACCTTTCATAACAACTCCCACCTGTCTGTCCAGCAGGGTGCACTGTTCCTATCATATTCCGTTGTCTAATTGTCATGAGCCCTGGATTGGGTTTATAATTGTTTGTACGTAGATAAGAGGGCTGTTGGCATGTGATTGTATACCCCAGATGCCTTTCTGTTCATATTGCCctatgtataattttttttttttgtattacatcctgtctaaTGATTTGAATTAAATGAATCAATTAACAAAATTGATCAATGCATGTGGATTGGGAGAGGTTTTCTGGAAGTTATTTTTCAATTGGTTTATGGAGTGTTGTTTGTTTGCAGAATCAAGGACACACGTGCTATTTGTATGATGAGGGTTTTAAGACGGAGAAATAATGACATTTGTCATTGCATTGTTTTATGAAGGAAGAAGGGCTATTGCTTTTGGTTGTTTCTTTGAATGATTTTACATTGAACTAGAGGCACATAGTTGTAGTATTGCAATTCCCTATAATTTCTTAAATCAAAATATGCATTATGTTCCTGTAATTTTACATGGGCCCATGAATTTGCGTTGTACAGATTGAATTGTGAGTGTTGAGGCATAAATGACATATTATCTTCTTGTTTAACAATCGTGGATGGTAAAAATGGTATGGAAACTTAATTATTTCATAATTTCATCTGACACAAAGATTCTGGCCCAACCAGTCTATTGTATAATATTTCCTAAACCATGGTAAAATGTCAAAACTCATACACACTATAAAGACAAATAACATTTAGGGAGAGGCCTTCTTCCCAGCTAACTATAAAAATAATTGGTGTTAGATTTAAAATCAGCCTGACGAGTGCAGCAGTAAGCCATGCTTTTTTTGGGTCCTTTGTTACACCATACAGTATAGGCTGGGAAACACCTTGTATGTTGTACAGTAGACCTATGTGCCTTTAGTTCTCATGTCTCATGATGACTGTAATATTGTTGCATATTTTCAATTGAACAGATTGTAGACGCCTTCTTTGCTGAATGTATGATCAATATTTAGGAGCAGTCTTCTGACTAGACCTACAGTCCCAACCTTACAATCAGAACTGGTGCATATCTCAGGATATGGGTCAGAACACAGAAACCTGATGTGTACATGGCACATTGTTCTTTATTGTCTAAGCAAACACAAATTGTACATGTATAGTTGAACTACTACATTATGTACCCTTGCAGGACGTACGTTTGGCTTATTGAGCCTATATGGGAATTTGAAATGGTTGGGTTTAATTGTTTCATAGGTATTTTATATGGTTGGTTTTATCGATGTAGTGCTAGGGTCTAAAGTGTTACATTAGCCATTACTGAAATGTACACTGTATGacccaaagtatgtggacacctgcttgtcgatcatctcattccaaaatcatgggcattaatatggagttggtcccccatttgctgctataacagcctccactcttcatggaaagctttccactagttggaacattgctgcggggacatgCTTCCCTTCAGTCACAAGAGAATTCGTAAGGTTGGGCATCGATGTTGggagtcagtgttccaattcatcccaaaggtgttcgatgtggctgaggtcagggctatgtgcaggtcagtcaagttcttccacattgagttcgacaaaccatttctgtatggacctcgctttgtgcacgggggcattgtcatgctgaaacagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU711241 lncRNA downstream 40965 55171062 ~ 55188756 (-) True G625472
TU711271 lncRNA downstream 59061 55170394 ~ 55170660 (-) True G625477
TU711235 lncRNA downstream 67534 55161005 ~ 55162187 (-) False LOC110528015
TU711233 lncRNA downstream 67534 55161550 ~ 55162187 (-) True LOC110528015
TU711172 lncRNA downstream 131444 55097743 ~ 55098277 (-) True G625414
TU711336 lncRNA upstream 4379 55313504 ~ 55314949 (-) True G625531
TU711365 lncRNA upstream 50699 55359824 ~ 55360081 (-) True G625560
TU711373 lncRNA upstream 59515 55368640 ~ 55368849 (-) True G625568
TU711375 lncRNA upstream 60220 55369345 ~ 55369642 (-) True G625570
TU711377 lncRNA upstream 64273 55373398 ~ 55373642 (-) True G625572
XM_021609791.2 mRNA downstream 3794 55209582 ~ 55225927 (-) True LOC110528017
XM_021609790.2 mRNA downstream 25471 55202139 ~ 55204250 (-) True LOC110528016
XM_021611133.1 mRNA downstream 33267 55195854 ~ 55196454 (-) True LOC110528968
XR_002474180.2 mRNA downstream 67475 55160922 ~ 55162246 (-) False LOC110528015
XM_021609780.2 mRNA downstream 71563 55132795 ~ 55158158 (-) True LOC110528009
XM_036983553.1 mRNA upstream 111341 55420466 ~ 55477160 (-) False LOC110528020
XR_005052611.1 mRNA upstream 111341 55420466 ~ 55477165 (-) False LOC110528020
XM_036983556.1 mRNA upstream 111341 55420466 ~ 55538752 (-) False LOC110528020
XM_036983555.1 mRNA upstream 111341 55420466 ~ 55553852 (-) False LOC110528020
XM_036983559.1 mRNA upstream 111341 55420466 ~ 55553852 (-) False LOC110528020
TU711245 other downstream 57521 55164492 ~ 55172200 (-) False G625472
TU711185 other downstream 154325 55072479 ~ 55075396 (-) True G625426
TU708601 other downstream 1906890 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 4271181 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 4923565 50304448 ~ 50306156 (-) True LOC110527964
TU711411 other upstream 124331 55433456 ~ 55434072 (-) True LOC110528020
TU713244 other upstream 1382198 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 1525460 56834585 ~ 56835092 (-) True G627314
TU713320 other upstream 1537837 56846962 ~ 56852301 (-) True G627323
TU713292 other upstream 1544442 56853567 ~ 56869375 (-) False vamp3

Expression Profile