RNA id: XM_021609796.2


Basic Information

Item Value
RNA id XM_021609796.2
length 1358
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC110528019
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55313448 ~ 55315903 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAACGCAacaattcattttttttgtaGGCATATTTTGGACCGCTATATTCAACAGACAGAAACACGTGGGGTCCTTTTCCTCCATAGGTCTACACAACGTGAGGACCATGCCGAAGTCAAAGAGAGACAAGAAAGTTTCACTAACAAAAACAGCCAAGAAGGGTCTGGAAACTAAACAGAACTTAATAGAAGAGTTGCGGAAATGTGTGGACATTTACAAGCATCTGTTCATCTTCTCTGTGGCAAACATGAGGAACAACAAACTGAAAGACATCAGGACAGCCTGGAAACACAGTCGATTCTTTTTTGGCAAAAACAAAGTCATGATGATCGCTATAGGTAAAGGATCAACAAGCGAGTACAAAGACAATTTGCACAAGGTCAGCCGGTTTCTGAGGGGAGAAGTGGGTGTGCTATTCACAAATAAAACCAAGGAAGAGGTACAAGAGTATTTCAGCCAGTTTAAAGAGATGGATTTTGCACGAGCAGGAAACAAGGCAGGGATGGCCATAACACTTGATGAAGGACCCCTGGAACAGTTCCCTCACTCCATGGAGCCACAGTTGAGACAGTTGGGACTCCCCACAGCACTCAAGAAAGGAGTGGTGACACTACTGAAAGACCATGACGTGTGCAAAGAGGGAGACACACTAACCCCTGAACAGGCCCGTATTCTGAAACTCTTTGGGATTGAGATGGCAGAATTCAGAGTGCAGATCAAGTGCATGTGGAACTCTGAAACGAGCGACTTTGAGAAGCTggctgaggaagaagaggaagaggccATGCAGGATAATGAcacagaggaggaagaagggggtGGGAAATGAATCTGGATAGACTAATGGACTTCTCAGACCTTAGGATTTTAATACTGTGTGACCTGTATGTTTTAATGTCTCAACCTTCAAGTGTTTCCTTTTGCCTATGAAATACTAGATTTCTGGTATGTTACCCATTGAATCTTGTGAACATACATTTTGTGCTTTATACATCTTTTGTGGTCCACTCAAATACAACAGTACAAACTAAACCGGTTTGCTTGGTTGTGTCTTataaaacatcccacaaaaaaaatgtttagtgGGAATTGTTTATGCACAGTATAGCTTTAAAATTGCCAGCTATGTAAAATTGTTAGCCACATTTTGATCCTTACAAACGCACTGGTCATGGCAGATCAGTGAAGATAAAATAATCCCATTGTTCTCCAGTTGATTAGACACAGCCTCCAGAAAATGTTTTTCCCTAATTCATTGAATTTAAATGAATTGCTCACCATTAGAATATACAAAATCAAAATAATCTGTGCCTTTCGTAGTTTGTTTTAATGAATACTTGCATCAATCTGATAAC

Function

GO: NA

KEGG:

id description
K14815 MRT4; mRNA turnover protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU710882 lncRNA upstream 10261 55302334 ~ 55303187 (+) True G625139
TU710831 lncRNA upstream 77834 55235355 ~ 55235614 (+) True G625089
TU710830 lncRNA upstream 78115 55235109 ~ 55235333 (+) True G625088
TU710829 lncRNA upstream 78402 55234740 ~ 55235046 (+) True G625087
TU710828 lncRNA upstream 78992 55234140 ~ 55234456 (+) True G625086
TU710915 lncRNA downstream 42571 55358474 ~ 55359040 (+) True G625170
TU710941 lncRNA downstream 114714 55430617 ~ 55430941 (+) True G625196
TU710943 lncRNA downstream 117555 55433458 ~ 55433752 (+) True G625198
TU710944 lncRNA downstream 118751 55434654 ~ 55434950 (+) True G625199
TU710947 lncRNA downstream 120688 55436591 ~ 55436817 (+) True G625202
XM_021608279.2 mRNA upstream 104740 55207615 ~ 55208708 (+) False LOC110527126
XM_021609788.2 mRNA upstream 114380 55197770 ~ 55199068 (+) True LOC110528013
XR_002474179.2 mRNA upstream 118386 55193493 ~ 55195062 (+) False LOC110528014
XR_005052710.1 mRNA upstream 133654 55178707 ~ 55179794 (+) True LOC118965383
XM_021609787.2 mRNA upstream 141248 55170794 ~ 55172200 (+) True LOC110528011
XM_036983552.1 mRNA downstream 17194 55333097 ~ 55416079 (+) True LOC110528970
XM_021609800.2 mRNA downstream 189503 55505406 ~ 55508166 (+) True LOC110528022
XM_021609802.2 mRNA downstream 395732 55711635 ~ 55714713 (+) False LOC110528024
XM_021611136.2 mRNA downstream 476388 55792291 ~ 55798284 (+) True LOC110528971
XM_036983565.1 mRNA downstream 791764 56107667 ~ 56295859 (+) False foxp4
TU710771 other upstream 99537 55211705 ~ 55213911 (+) True G625038
TU710810 other upstream 105185 55207661 ~ 55208263 (+) True LOC110527126
TU710695 other upstream 241061 55070632 ~ 55072387 (+) True LOC110528007
TU710684 other upstream 260760 55047296 ~ 55052688 (+) False G624962
TU710686 other upstream 260760 55047296 ~ 55052688 (+) True G624962
TU710967 other downstream 156565 55472468 ~ 55472843 (+) True G625222
TU710986 other downstream 395770 55711673 ~ 55714711 (+) True LOC110528024
TU711835 other downstream 755151 56071054 ~ 56078929 (+) True G626004
TU712312 other downstream 1166491 56482394 ~ 56485304 (+) True G626417
TU712869 other downstream 2003799 57319702 ~ 57323021 (+) True snrpe

Expression Profile