RNA id: XR_005052611.1


Basic Information

Item Value
RNA id XR_005052611.1
length 2834
RNA type mRNA
GC content 0.49
exon number 13
gene id LOC110528020
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55420466 ~ 55566988 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACTGACCTGACTACCCCGACACTGACCTGACTACCCCGACACTGACCTGACTACCCCGACACTGACCTGACTACCCCGACACTGACCTTGACTACCCTGATACTGACCTGACCAAGAGACTATCCAGACTGAAAGTAGCCGTGTCTTAGACTGACCCACCACAATCTTTAACCGGAGCACCTGAAGCCGTGCCTGGTGGCTCCCAGTCCCAGCCAGGATGCAGGTGTCGTTAGTGTGTACGGACCACAACCGTGGAGGGGTGAGCCGCAGTACAGAGGAACGGCTCAACCACCGCCAGAATGCCAACAGCCCCAACACAGGCACCCGCAACAAGTTCAGGGCTGTGGCCATGGTGGCCCGTAGTCTGGGACAGCTCACGGTCCAGAGCCAGCCCACGTCCAGCGACCAGAGCATACGGACCGGCATGAAGTATAGAAACCTTGGGAAGTCTGGCCTGAGGGTGTCCTGCCTTGGACTAGGAACATGGGTGACGTTTGGTGGACAGATAACAGACGAGATGGCCGAGCAGCTTGTGTGCCTGGCCTACGAGAACGGCATCAATCTGTTTGACACAGCAGAGGTCTACGCTGCAGGGAAggCTGAGGTGGTGCTGGGGAACGTCATAAAGAAGAAAGGATGGAGACGTTCCAGTTTGGTGATCACAACCAAGATCTTCTGGGGCGGAAAagcagagactgagagaggctTGTCCCGAAAACACATTATAGAAGGTTTAAAGGCCTCACTGGAGAGACTGCAGCTAGAGTATGTGGACGTGGTGTTTGCAAACAGACCGGACCCCAACACTCCCATGGAAGAGACGGTGCGGGCGATGACCCATGTGATCAACCAGGGCATGGCCATGTACTGGGGCACGTCCCGTTGGAGCCCCATGGAGATCATGgAGGCGTACTCTGTGGCGCGGCAGTTCAACCAGATCCCTCCCATCTGTGAGCAGGCTGAGTATCACATGTTCCAGAGGGAGAAGGTAGAGGTGCAGCTGCCAGAGCTCTTCCATAAGATAGGTGTGGGGGCGATGACATGGTCACCACTGGCCTGTGGGATCATCTCAGGGAAATACGACAGCGGGGTACCACCTTACTCCCGCGCTTCTCTTAAGCGTGGTGTCTACGGAACGAGGGGGTGAGCTCCGTACTCTTGGGGGCATCCAACACCGACCAGCTGATGGAGAATATAGCAGCAATACAGGTTCTTCCCAAACTATCCTCCTCAATCACACACGAGGTAGATAGCATCCTGGGGAACAAGCCGTACAGTAAAAAGGACTACCGTTCCTAACTCACCACCACGCCAGCCAGCAGGGCTGCTCCAGGGCTGCTCCAGGGCTGCTCCAGGGCTGCTCCAGGGCTGCTCCAGGGCTGCAGCACAGCGCCATGCCCCACCTTTGCCTGATCCTCCGTTTGCTTGAGCTTTTACTGAATTAGACCCCGGCGCATGAGTCTGACCCTGCCTCAGCCACCCTGGGGAGCATCATGTAGACTTCCAGAGAAAAGGATGAAGAAATAAAGAGAGATGGTCACATCTGCAGGGAAGGAAGGACAGATAGAAGAAAGATGTATttttaaaactgaaaaaaaaatatgtttataaaAAACATGCTTGCTTGGCAGCCagatatttcttttttttgcatTTGTTTCTCTAAATACTGAATGCATACCAATGGATTTAAGTTTATACAAATATACAACAAAAACTCTGTTGCACATGTATGCCACACATTCGTTTTTTTGGAGTTCTGTTTAATATGTACGTCACAGTTTCTCTGAAACAGCTGTTAGTTTGTGTAGTCTACATATTATCAGTGTACCAGCCTCCTCGCAGGCAGAACAATCAGCACTTTACTATTGTACAGTTCAGTCATTGAGAGGTTGTAGAATATGTGAGAGGATGAAATAACTCAACTATACCACACACGGTGAGTCATTGCACTGTAGGATCTCCTCCCCTGTTTCAGTTTCCTACCTGTTCCCCTTCGTCAGTCTGGTCTCCACAGTGCTGGTTCATAACAGACTGTTATTTGACAATAGTCCCTGGCCAACGGAAACACTAGTTGGTTTAAGTGGCAGCCCTTCCTGCCCAATAGGAGTGAAAGCTCAGGGATCGGAACAGTATTTAATGTCCATGTCTTTCTTTCATGTGTGGACACCTAATGGGGACCTGTCCACTGTCAAACCAGGGACATTTTCACGTGGCTTTGAGCCAAAGATATTCTAACATCTTTCAACGCCACATCTAAGTGGGTGTGGCTTGTTGGAAGAGTATAGCAACCGTCTTAAAGCCTATACTATCCAGCTTATTACCTATTGACTCTCTTCACGTGTACAGTATAATCACTTGATCATGCTGTTCTATGCTTATACCCACATACACAGTACACATTAATTGTACACTCCTCTATTTAGGGAATGATACATTGATTTTCAGAAGGCAGATGATAATCTATACATTTTCAATAATCATATAAATTGCACCCTGAAGACATCTGCCGCTGCCCTCATATTCACTCTCTAGCTGTTAGGTCCTCTCTTACTGTGAGACAAAGCGCAAAGTGGATAGCATGTGATACGTCCTCCATGCATGAGCCTTCGTCCAACAGCCTCTGGGGATTAAGCAAAGTCATGGTCACAAGAGTAAACTAACACGTGTAAATATATTGAATACTCACTCCTCTTTCGTAACTCATTCTCTGGTTCAACACGTTCAGTTTTCTAGTACTGTAGGTCAAGGTCACGCGTTCAGTAAAAACGTGCAGTATCTTTTTTTACAATCAGGGTCAAGTCTTAATGCTATGTATGTTTTTGTAgggtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU711416 lncRNA downstream 7799 55412108 ~ 55412667 (-) True G625604
TU711415 lncRNA downstream 9183 55410781 ~ 55411283 (-) True G625603
TU711402 lncRNA downstream 13295 55406931 ~ 55407171 (-) True G625596
TU711401 lncRNA downstream 14438 55405804 ~ 55406028 (-) True G625595
TU711400 lncRNA downstream 14726 55405361 ~ 55405740 (-) True G625594
TU711453 lncRNA upstream 5689 55482854 ~ 55483172 (-) True G625641
TU711457 lncRNA upstream 18196 55495361 ~ 55495568 (-) True G625645
TU711461 lncRNA upstream 23034 55500199 ~ 55500434 (-) True G625649
TU711463 lncRNA upstream 28007 55505172 ~ 55505401 (-) True G625651
TU711465 lncRNA upstream 30558 55507723 ~ 55714702 (-) False G625652
XM_021609792.2 mRNA downstream 111340 55229721 ~ 55309126 (-) False LOC110528018
XM_021609793.2 mRNA downstream 111340 55229721 ~ 55309126 (-) False LOC110528018
XM_021609794.2 mRNA downstream 111341 55229721 ~ 55309125 (-) False LOC110528018
XM_021609795.2 mRNA downstream 111341 55229721 ~ 55309125 (-) False LOC110528018
XR_005052610.1 mRNA downstream 127645 55290527 ~ 55292821 (-) True LOC118965300
XM_021609799.2 mRNA upstream 89957 55567122 ~ 55571727 (-) True LOC110528021
XM_036981864.1 mRNA upstream 143388 55620553 ~ 55699308 (-) False pax7b
XM_036981865.1 mRNA upstream 143388 55620553 ~ 55699308 (-) False pax7b
XM_036981867.1 mRNA upstream 143388 55620553 ~ 55699308 (-) False pax7b
XM_036981868.1 mRNA upstream 143388 55620553 ~ 55699308 (-) False pax7b
TU711245 other downstream 248266 55164492 ~ 55172200 (-) False G625472
TU711185 other downstream 345070 55072479 ~ 55075396 (-) True G625426
TU708601 other downstream 2097635 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 4461926 50956271 ~ 50958540 (-) True G619733
TU704151 other downstream 5114310 50304448 ~ 50306156 (-) True LOC110527964
TU713244 other upstream 1214158 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 1357420 56834585 ~ 56835092 (-) True G627314
TU713320 other upstream 1369797 56846962 ~ 56852301 (-) True G627323
TU713292 other upstream 1376402 56853567 ~ 56869375 (-) False vamp3
TU713290 other upstream 1376652 56853817 ~ 56869375 (-) False vamp3

Expression Profile