RNA id: XM_021609799.2


Basic Information

Item Value
RNA id XM_021609799.2
length 1135
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110528021
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55567122 ~ 55571727 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGTGTGTTCCTGCAGAGAGCTCTGCTTCCTGACAAAATAAAAGTCCTCTGACAGATATTTGCTGTCTTGTTGtgacactcactcacccactcgcTCAATAATGGCAGGCAAAAAGGCATTAGTAATCCTCTCTAAGGGTGCAGAGGAGATGGAAACTGTTATACCTGTGGACGTCATGCGTAGAGCTGGGATTGCTGTGACGTTGGCAGGGTTGACTGGCAAAGACCCTGTGCAGTGCAGCAGAGACATCTACCTTGTTCCTGATTCCAGCCTGGAGGATGCCCGCAAGCAGGGTCCGTATGATGTGGTTCTTCTACCAGGGGGGGCTCTCGGTGCCCAGAACTTGTCAGAGTCCCCTGCTGTAAAAGAGGTGTTGAAGGACCAGGAGGGCAGGAAAGGGCTGATTGCTGCTGTCTGTGCAGGTCCCACGGCGCTGCTGGCACATGGTATTGCCTACGGCAGTACGGTCACCACCCACCCTGGTGCGAAGGACAAGATGATGACTGGAGGCCACTACACATACTCAGAGGCTCGGGTCCAGAAGGATGGCCATCTGATCACCAGCCGTGGGCCAGGAACCAGCTTTGAGTTTGCCCTGGCCATTGTAGAGGAGCTCATGGGGCCTGAGGTTGCTGCTACAGTCAAAGCACCCCTGGTTCTGAAAGACTGAGTGGTGTTGAGTGTCACAAGCTGAAGAACTGCAAGCAGCATGATCAACTTCACCCCACCTACTCAGCACTGTTCATTATGATACACAGGCCAATCATTGTGAACAAATAATAATGGTTGACAGGATAATAGTAATAACATGGATTTTATTATtgtctccttctctttccttcaCTGGGATATGTTGCCCAGTGAAGACTAGTAGTTTAGAATGTAGCCACAGCATGAAATAAAAATTACATTTGTGTTTCATCATCACACAGAGAAAAATTATACAAAGGTTATGGATTAGTAATCTTACTGAATCGACAAATATAAAATTGAATTGGTAACGTTACAGTGCTGCTACTGGTAGTCTCGATGTTTGAGGTCTACGAGTCGTAGTCTACAGCAGTATGCAGGTAGGTAGGCTAAACAGCAGATTTGAGAGCTTCAAATAAATATGATTTTAAGGATTGGTAAAA

Function

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0006954 inflammatory response biological_process
GO:0070301 cellular response to hydrogen peroxide biological_process
GO:2000277 positive regulation of oxidative phosphorylation uncoupler activity biological_process
GO:0007338 single fertilization biological_process
GO:0006508 proteolysis biological_process
GO:0060548 negative regulation of cell death biological_process
GO:0050821 protein stabilization biological_process
GO:0043523 regulation of neuron apoptotic process biological_process
GO:0005634 nucleus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
K05687 PARK7; protein DJ-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU711463 lncRNA downstream 61721 55505172 ~ 55505401 (-) True G625651
TU711461 lncRNA downstream 66688 55500199 ~ 55500434 (-) True G625649
TU711457 lncRNA downstream 71554 55495361 ~ 55495568 (-) True G625645
TU711453 lncRNA downstream 83950 55482854 ~ 55483172 (-) True G625641
TU711444 lncRNA downstream 97907 55468920 ~ 55469215 (-) True G625632
TU711464 lncRNA upstream 142061 55713788 ~ 55714702 (-) True G625652
TU711628 lncRNA upstream 221238 55792965 ~ 55793222 (-) True G625805
TU711635 lncRNA upstream 230311 55802038 ~ 55802343 (-) True G625812
TU711655 lncRNA upstream 254334 55826061 ~ 55826268 (-) True G625832
TU711685 lncRNA upstream 297211 55868938 ~ 55869191 (-) True G625862
XM_036983554.1 mRNA downstream 134 55420466 ~ 55566988 (-) False LOC110528020
XM_036983558.1 mRNA downstream 134 55420466 ~ 55566988 (-) False LOC110528020
XM_036983555.1 mRNA downstream 13270 55420466 ~ 55553852 (-) False LOC110528020
XM_036983559.1 mRNA downstream 13270 55420466 ~ 55553852 (-) False LOC110528020
XM_036983556.1 mRNA downstream 28370 55420466 ~ 55538752 (-) False LOC110528020
XM_036981864.1 mRNA upstream 48826 55620553 ~ 55699308 (-) False pax7b
XM_036981865.1 mRNA upstream 48826 55620553 ~ 55699308 (-) False pax7b
XM_036981867.1 mRNA upstream 48826 55620553 ~ 55699308 (-) False pax7b
XM_036981868.1 mRNA upstream 48826 55620553 ~ 55699308 (-) False pax7b
XM_036981869.1 mRNA upstream 48826 55620553 ~ 55699308 (-) False pax7b
TU711411 other downstream 133050 55433456 ~ 55434072 (-) True LOC110528020
TU711245 other downstream 394922 55164492 ~ 55172200 (-) False G625472
TU711185 other downstream 491726 55072479 ~ 55075396 (-) True G625426
TU708601 other downstream 2244291 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 4608582 50956271 ~ 50958540 (-) True G619733
TU713244 other upstream 1119596 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 1262858 56834585 ~ 56835092 (-) True G627314
TU713320 other upstream 1275235 56846962 ~ 56852301 (-) True G627323
TU713292 other upstream 1281840 56853567 ~ 56869375 (-) False vamp3
TU713290 other upstream 1282090 56853817 ~ 56869375 (-) False vamp3

Expression Profile