RNA id: XR_005052613.1


Basic Information

Item Value
RNA id XR_005052613.1
length 4425
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC118965301
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55644983 ~ 55649872 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCACCTTCAGTTCTCTCAAATGCATCTCATCTTGAATGTTGTTGTTGACGTTGATTTAGTTCTCTCCTGTATTCCTCCTTCTATGTCATGAAATAACAAACCAGTACAAATAGACTCACCATCATGATGGAAAttataatgttatattatggGTTTTCAGACAGCATCTGTCCAGAGGAGATATGTTTGTGTGTTGGTATATGTGAGCTATTTTCTCTGGTGTCTGGTACTGATGGGCTACCCGTTACTGGTAAAGAGGACAACATTCTGTGATTCCCAGTAAATGGTCTGTGTTGGCCAACTACCAAGTCTGTAATGGAATCCTGCCGACAGGTGCACCCATCCCAATCCCGTAACGTTTTCCCATTACGGCCGCTGGAAAAGCCATCCACACCGGCACAGGGGTTGTTGTCATGTGGGATATAAGTTTGGCTAGTTTGAGAGAGAGGCACTAGCTATGtcaaggggtggggtggggggttaaGCTGTGGCTGGGCCAGAGTTATGAGAGCAGATTTGTTGTGTTGGTCCTGTTTCATTTGGTGTAACAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATTAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCATGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCATGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCATGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCATGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCATGTTTTGGATAGAGGCCAGGAGTATGAAGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGACAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCATGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATGTCAGCATGTGTTGGATAGAGGCCAGGTGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCATGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCATGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGACAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGACAGGGAACTGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGGACTGAAATATCAGCAGGTGTTGGATAGAGGACAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCATGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATGTCAGCATGTGTTGGATAGAGGCCAGGTGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCATGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCATGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCATGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCATGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAAAAATATCAGCATGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGACAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGACAGGGAACTGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGGACTGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCATGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCATGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGGGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCATGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCATGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCATGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAGAAATATCAGCAGGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGACAGGGAACAGAAATATCAGCATGTGTTGGATAGAGGCCAGGAGTATGAGGTGGAGGCAGGGAACAAAAATATCAGCAGCGACTGAAAACATTAGTATTGCTTTTTTTGATGGAGGGAATTTTGTGTCAATCACCTGGAACTCTCTTGCTTTGAAGACCTGAGAGGATTTTCATTCACAACAAATAGTTCCCAAACTTTTCATTTGTGAAACATATTTTGGAAGTCTTCACCATATACTCACAATGACATACAAACTATAAGTGGCACGCCTGctcccactacccctccaccaGGCTACCCGTCATAATACTCACCTGTTAACATCATTACGCGCAgctgcgctcattggactcacctggactccctcACTGTGTTGATTACCCCTGTGTATATGTCTGCTCCTCTGTGTTGTTCCCTGTAGTAGTATTGTTTGTCGTGTCGTCTTTATGTCCAGACGCAGTTCCTGTTCTGTTGCATGTCTGTCTATATTAAATGGATCACTCcatgtacctgcttctcatctcctgtGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU711463 lncRNA downstream 139582 55505172 ~ 55505401 (-) True G625651
TU711461 lncRNA downstream 144549 55500199 ~ 55500434 (-) True G625649
TU711457 lncRNA downstream 149415 55495361 ~ 55495568 (-) True G625645
TU711453 lncRNA downstream 161811 55482854 ~ 55483172 (-) True G625641
TU711444 lncRNA downstream 175768 55468920 ~ 55469215 (-) True G625632
TU711464 lncRNA upstream 63919 55713788 ~ 55714702 (-) True G625652
TU711628 lncRNA upstream 143096 55792965 ~ 55793222 (-) True G625805
TU711635 lncRNA upstream 152169 55802038 ~ 55802343 (-) True G625812
TU711655 lncRNA upstream 176192 55826061 ~ 55826268 (-) True G625832
TU711685 lncRNA upstream 219069 55868938 ~ 55869191 (-) True G625862
XM_021609799.2 mRNA downstream 73256 55567122 ~ 55571727 (-) True LOC110528021
XM_036983554.1 mRNA downstream 77995 55420466 ~ 55566988 (-) False LOC110528020
XM_036983558.1 mRNA downstream 77995 55420466 ~ 55566988 (-) False LOC110528020
XM_036983555.1 mRNA downstream 91131 55420466 ~ 55553852 (-) False LOC110528020
XM_021609801.2 mRNA upstream 77560 55727429 ~ 55735021 (-) True LOC110528023
XM_036983573.1 mRNA upstream 832504 56482373 ~ 56515656 (-) False tfeb
XM_036983570.1 mRNA upstream 832504 56482373 ~ 56555348 (-) False tfeb
XM_036983569.1 mRNA upstream 832504 56482373 ~ 56593011 (-) False tfeb
XM_036983571.1 mRNA upstream 832504 56482373 ~ 56593011 (-) False tfeb
TU711411 other downstream 210911 55433456 ~ 55434072 (-) True LOC110528020
TU711245 other downstream 472783 55164492 ~ 55172200 (-) False G625472
TU711185 other downstream 569587 55072479 ~ 55075396 (-) True G625426
TU708601 other downstream 2322152 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 4686443 50956271 ~ 50958540 (-) True G619733
TU713244 other upstream 1041454 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 1184716 56834585 ~ 56835092 (-) True G627314
TU713320 other upstream 1197093 56846962 ~ 56852301 (-) True G627323
TU713292 other upstream 1203698 56853567 ~ 56869375 (-) False vamp3
TU713290 other upstream 1203948 56853817 ~ 56869375 (-) False vamp3

Expression Profile