RNA id: XM_021609802.2


Basic Information

Item Value
RNA id XM_021609802.2
length 1371
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC110528024
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55711635 ~ 55714713 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAAAACTACACAAAGAAGAACATCACTTCCTGTTTAAAAATGGCTGCACCCATACTAATGTCACATTAGACATTAGAAGTGCTCTTTTCTGTAATGTTGAAAACGTGTTCGATCTCTTACGTATTCTTTGGACCTCTTTTGCAGGGTATACCTAAACATGGTCCATCTATCATCCTTCCTACTGAAGACGTACCATGGAGGACACATTGTCATCAGATTGGCAATGGCTGGCCACAAACAGTCTAACAGACCTTTCTACCGCATTGTGGCAGCTTACAACAAGCGAGCACGAGACAGTAAATACATAGAACAGCTAGGCTCTTATGACCCCCTGCCAAACATCTACAATGAGAAACTGGTCAGCATCAACTCTGACAGGATCAAGTACTGGATGGGCTGTGGTGCACATCCAACGAAGCCTGTGGCCAAACTTCTAGGACTGGCTGGGTTCTTCCCCCTGCATCCCATGACGGTGACAGAAACAGAGCGTCACAGGGCCCTGGCAGAACTAGCAGAGGAAGCAGCTCCAGAGGATGGAGTTAAGCAGCAGCAACTATGATAGCTGGAGCATGGGGGACTGTCAAGCATAGCATGGTGTGGTTACTGTACACAAAGGACAGCTAGAAATGACATTCTCCTCCCAAAAGGTTAACTGTTTCCAAGTGAAAGCCTTTGTTCTATATGAACTATGAATATTCTTAAGCAGTGCTTTTCCTACaaattttctttttttatttcaccattatGATAAGTGCTACATATTCACATCTCAAAAGCAAAGACATTTGTTACGATTTTCAGGAAGTATTTTATATTAGCTCAGTCGCTAGGAACAATTTGTGTAAGTTGGTTTACAATTTGGCTTAACCCTGTCAGCTGTAGTTGCAGATATTCCACTACTGACGTGCTGCCAAGATGAAACTAATGTATTTTGCATAGAGGCCCCTGTGGGACAGTCATTTAACCTTTTGAGGTCCCATTTTAAATGAAAGAATAACGTATGTCGTACATAAAGTCTTCATATATAATCTAAGTGTATGTCAAACTCTATAAAGGATGTCATAACCAGGCACAATGTAGGGTGAATTGCCAAATGTCACATACCTCATTGTGTATGTTTATGCACCATTTATAGAGCATGACATACAAATATAGAggatttgtgaagcatttatgtcGTGCATATGAAACATTTATGTATGCTATATAAGTTGTACTGTATTTAAAATGTGACCCTGTTGGATGGTGGACGCAATATTTAAGTCCGTCAAACATAGGAGAGtaatgacatacagtgccttaaagtattcatacccctggacttaCTCAACATTTTGTGTTAGTCTGAataaaaaatggattaaataga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU711059 lncRNA upstream 84994 55625619 ~ 55626641 (+) True G625302
TU710995 lncRNA upstream 139893 55566982 ~ 55571742 (+) True G625244
TU711007 lncRNA upstream 183547 55525472 ~ 55528088 (+) True G625256
TU710970 lncRNA upstream 236325 55475040 ~ 55475310 (+) True G625225
TU710969 lncRNA upstream 237417 55474000 ~ 55474218 (+) True G625224
TU711150 lncRNA downstream 75589 55790302 ~ 55790523 (+) True G625392
TU711152 lncRNA downstream 83728 55798441 ~ 55798681 (+) True G625394
TU711669 lncRNA downstream 127661 55842374 ~ 55842892 (+) True G625846
TU711670 lncRNA downstream 130155 55844868 ~ 55845248 (+) True G625847
TU711686 lncRNA downstream 155436 55870149 ~ 55872520 (+) True G625863
XM_021609800.2 mRNA upstream 203469 55505406 ~ 55508166 (+) True LOC110528022
XM_036983552.1 mRNA upstream 295556 55333097 ~ 55416079 (+) True LOC110528970
XM_021609796.2 mRNA upstream 395732 55313448 ~ 55315903 (+) True LOC110528019
XM_021608279.2 mRNA upstream 502927 55207615 ~ 55208708 (+) False LOC110527126
XM_021609788.2 mRNA upstream 512567 55197770 ~ 55199068 (+) True LOC110528013
XM_021611136.2 mRNA downstream 77578 55792291 ~ 55798284 (+) True LOC110528971
XM_036983565.1 mRNA downstream 392954 56107667 ~ 56295859 (+) False foxp4
XM_036983567.1 mRNA downstream 419243 56133956 ~ 56295859 (+) False foxp4
XM_036983568.1 mRNA downstream 419245 56133958 ~ 56295859 (+) False foxp4
XM_036983561.1 mRNA downstream 419247 56133960 ~ 56295859 (+) False foxp4
TU710967 other upstream 238792 55472468 ~ 55472843 (+) True G625222
TU710771 other upstream 497724 55211705 ~ 55213911 (+) True G625038
TU710810 other upstream 503372 55207661 ~ 55208263 (+) True LOC110527126
TU710695 other upstream 639248 55070632 ~ 55072387 (+) True LOC110528007
TU710686 other upstream 658947 55047296 ~ 55052688 (+) True G624962
TU711835 other downstream 356341 56071054 ~ 56078929 (+) True G626004
TU712312 other downstream 767681 56482394 ~ 56485304 (+) True G626417
TU712869 other downstream 1604989 57319702 ~ 57323021 (+) True snrpe
TU712997 other downstream 1828169 57542882 ~ 57585844 (+) False G627035
TU712995 other downstream 1864337 57579050 ~ 57596051 (+) False G627035

Expression Profile