RNA id: XM_021611136.2


Basic Information

Item Value
RNA id XM_021611136.2
length 2674
RNA type mRNA
GC content 0.56
exon number 8
gene id LOC110528971
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 55792291 ~ 55798284 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCAGCAGCATGGCGGTGCCATTAAGACTGCTGGTTCTATGCTGGGTGTTAGGAGCAGGGCGTAGTCAGAGCTCTCCACCATGGTTCCAGAACATCACTACCAACCTGTTTAACTCTTCTGGAGACATCCTCCTCGGGGGGCTCTTCCCCATCAACGAGCTCACCAGCAACCTGAGCCACAGAGTGAAGCCGGACAACATTAGCTGTGACAGGATTAATGAGCATGGGCTAGGTATGGCCCTTGTGATGAAGTACACAGTGGATGAGATCAACGCCAACTCCACCCTACTCCCTGGTATCAGGCTTGGCTATGAGATCTTCGACACCTGCAAGCAGTCTGCCGTCATCGTGAAACCCACACTCCTCTTCCTCACTGAGGGCTCCAACCGAGAGCTGGCCGTCATGTGTAACTACACAGACTATGTGACCCGTGTGGCGGCTGTCATCGGCCCATCCACCTCAGAGATGGTCTCAGTCATAGGAAAACTATTGGGATTCTTCCTCATACCACAGATCAGCTACCTCGCAACTAGTGACTTGTTCAGTGACAAGAGTATGTACCCATCGTTCCTGCGCACCGTGCCCAGTGACAAGAGGCAGGTGGAGGCCATGGTGCGTCTGCTGAACAGGTTCCAGTGGAACTGGGTGGCCGTGGTGGGCAGTGAGGATGAGTACGGACGCCAGGGCCAGCGCCAGTTCTCCACCCTGGCAGGAAGGAGCTCCATCTGTGTGGGCTACGAGGGGTTAATCCCTATGTACCGTGACCCACAGCCAGTGGTCAGAGAGATCCTGGACCGCATCGCAGAGGCTAAGGTGGGAGTGGTGGTGGTCTTTTCCCTCTCCCAGCCTGCCAGAGCCTTCTTCACTGAGGTGATCAGGAGGAATCTGACAGGTGTGTGGGTGGCCAGCGATGCGTGGGCCCTGCACAAAGACGTATCAACTCTCCCAAACATCCACACTGTGGGCACTATCATTGCCTTCGCAGTCCAGAGCCAGACCCTGGCCCTGCTCACACCCTACACCAGTGAACTCTTCTCCAGGATCAGAGAGGAGAGGGCCAGGCAGCCCTCACCAGATACAGAGTCAACCCGTGGTATGAACCAGTGCCCAGACTGCTGGAACCTGTCCCCAGACAACGTAGGTCTAGTGACAGAGCCCATACTGCTGAGGTCAGCTTTCAGTGTCTATGCTGCCATCTACAGCGTTGCACACGCACTGCACAATCTGCACGGGTGCAATGCCAATAGTTGCCCGAGGGGCCCTAAAATCAAAGTCTATCCCTGGCAGCTGTTGGAGGTGCTGAAGAAGGTAAACTTCAGTCTAAATGGAAGTCATTTTGAGTTTGACAGTAATGGAAACCCAAACATTGGCTACAACGTACTACAGTGGGTCTGGAGAAACAACAGTTTGAGTTTCAAAGATGTCGGCACCTTCTATAAGAACCTGTCAATCAACAACaccctcatccaatggcatacaGGCAGTACTAAGGCCCCTGAGTCTACCTGTTCCTCTGAGTGTGGCCCTGGCCAGGTGCGCAGAGTGAAAGGTTTCCATTCCTGCTGCTATGACTGTATTGACTGTTTACCGGGCACCTTCCAGAATGGCACAATGGACATCCAGTGTACCCAGTGTCTAGATGGCCAGTGGTCCCTGGTACGTAGCACCAACTGCACCGAGCCTACCTTTGACTTCCTGACCTGGAGTCAGCCTGAGTCCCTGGGGATGCTGCTGGCCATGCTGGTGCTGCTGGTCTGTCAGGGGGCTGTGGGGGTCCTTCTCCTGCAGCACCGGGGGTCTCCACTGGTGAGGGCCTCTGGGGGGGCCCTGGGTGGTGTGGCCCTCCTCAGCCTGATGGGGGGCTGTGCCTGCCTGCTGATGTTCCTGGGCCAGCCGGGGGAGCTGGTGTGTCGTCTGCAGCTGCCCCTCAGCTCTATTTTCCAAACGGTCACCCTGTCCACCATCCTAGCCATCTCCCTGCAGATTGTGTACGTGACAGAATTCCCTGGCAAGGCTCCTTTTCATCTGGATACACTGAGAGGCCCTGGAGGCTGTCTGCTAGTATTGGCCTGCTGTGGAGTGCAGGCAGGGATCTGTGGGTACTATGTCCAGGAAGGGCCCTCTCTATCCCAgtacctggccaagatgaaggtGACCTTTGTGAGGAAGTTCCTGCGATGCCCTGTGGAACCCATTTTAGCTCTGGGCCTGATGCAGGGCTTCAATGGCCTCCTCGCCCTCACATCCTTCATGTGCACCTTCATGTCTGTGAAGAGCGTTCGACAATACAACCTGGCCAGAGATATCACCTTCTCCACCCTGACCTACTGCATGGTTTGGGTGGTCTTCATCCCCATCTACACCGGTCTGAATGACAAAGACCGCTCCATCGTTCATGTATCTGTCAGTTTGCTCAGTAACATGGGGCTGATGGCGGCCTACTATCTGCCAAAATGTCATCTGCTGCTGAAGAAACCTGAGCTCAACACAGAAGAGCACTTTCGTACCTTCCTCGAGGAGGCTGAAGCAACTCCTCAGGAGGAGCATGACCAGGGACCTGCAGAGGAAGAACAGGGATCTGCAGGGGAGGGACAGGGATCAGGAGAGGGGCAGGGATCAGGGGAGGGGCAGGGATCAGGGGAGGGGCAGGGATCAGGGAAGGGACAGGGATAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K04626 TAS1R3; taste receptor type 1 member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU711150 lncRNA upstream 1768 55790302 ~ 55790523 (+) True G625392
TU711085 lncRNA upstream 63070 55675051 ~ 55729221 (+) True G625328
TU711059 lncRNA upstream 165650 55625619 ~ 55626641 (+) True G625302
TU710995 lncRNA upstream 220549 55566982 ~ 55571742 (+) True G625244
TU711007 lncRNA upstream 264203 55525472 ~ 55528088 (+) True G625256
TU711152 lncRNA downstream 157 55798441 ~ 55798681 (+) True G625394
TU711669 lncRNA downstream 44090 55842374 ~ 55842892 (+) True G625846
TU711670 lncRNA downstream 46584 55844868 ~ 55845248 (+) True G625847
TU711686 lncRNA downstream 71865 55870149 ~ 55872520 (+) True G625863
TU711689 lncRNA downstream 76890 55875174 ~ 55875523 (+) True G625866
XM_021609802.2 mRNA upstream 77578 55711635 ~ 55714713 (+) False LOC110528024
XM_021609800.2 mRNA upstream 284125 55505406 ~ 55508166 (+) True LOC110528022
XM_036983552.1 mRNA upstream 376212 55333097 ~ 55416079 (+) True LOC110528970
XM_021609796.2 mRNA upstream 476388 55313448 ~ 55315903 (+) True LOC110528019
XM_021608279.2 mRNA upstream 583583 55207615 ~ 55208708 (+) False LOC110527126
XM_036983565.1 mRNA downstream 309383 56107667 ~ 56295859 (+) False foxp4
XM_036983567.1 mRNA downstream 335672 56133956 ~ 56295859 (+) False foxp4
XM_036983568.1 mRNA downstream 335674 56133958 ~ 56295859 (+) False foxp4
XM_036983561.1 mRNA downstream 335676 56133960 ~ 56295859 (+) False foxp4
XM_036983563.1 mRNA downstream 335678 56133962 ~ 56295859 (+) False foxp4
TU710986 other upstream 77580 55711673 ~ 55714711 (+) True LOC110528024
TU710967 other upstream 319448 55472468 ~ 55472843 (+) True G625222
TU710771 other upstream 578380 55211705 ~ 55213911 (+) True G625038
TU710810 other upstream 584028 55207661 ~ 55208263 (+) True LOC110527126
TU710695 other upstream 719904 55070632 ~ 55072387 (+) True LOC110528007
TU711835 other downstream 272770 56071054 ~ 56078929 (+) True G626004
TU712312 other downstream 684110 56482394 ~ 56485304 (+) True G626417
TU712869 other downstream 1521418 57319702 ~ 57323021 (+) True snrpe
TU712997 other downstream 1744598 57542882 ~ 57585844 (+) False G627035
TU712995 other downstream 1780766 57579050 ~ 57596051 (+) False G627035

Expression Profile