RNA id: XM_036983565.1


Basic Information

Item Value
RNA id XM_036983565.1
length 8955
RNA type mRNA
GC content 0.45
exon number 18
gene id foxp4
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 56107667 ~ 56295859 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCCCCAACATATCCTCAACCAACACACAACCCGAATAATTCAACACTGATTTGCTAGCGAAGGAGCGAGCGACAGATGGGATGCCAAAAACTGAGTCGATTATCGTCATTGGGACTTGTGGAGGGGTTAAGATCTGAATAACGGCGAGATAGCAGGATCAGATCAGAGTGAGGAGAGCCGGCAACGAACAGCCCGAAAAGCTGTGTGCTTTCTCTCCATCAACTTCCCCAAGGGCTGCGCATGCAGCCTGTGTGTGAGTTAGTGGCACTAGTATTGTTCTGACTTCACTAGCTACAGTGCCCACTCCTAGAGAGAGAACGCACAACAAAAGACAAGAAAGGAAGGAAGCACGGAGTAACTAACGAAGACGGTTGTCGTTGAAAGTAATGGTCCTGCGATACCAATCTTAGATTCCAAGATTTCTCTCTTTTTGTTATTTTGCCTTGAGTCTTTGTAGCGGTGAGGGGACTCGCCGTGTGGTGTTGCGCCGAGCAGAAGCGGGGCTGTCCACATGGTCCAGCCACTGGTGTGAAAGTTGACTTCTTCAGAAAACAAGAACAGGTGCCACGTGATGATGGTGGAATCAGCCTCTGAGACCATTCGAACTACGACCTCCAATCAGAACGGAGTCAGCAACCTCAGCAGCCAATTGGATggcgggggagggagagaaggcggGTCCAACGGAGACAACAATGGGGAGATCAGCCCAGTGGACCTACTGCACCTCCAGCagcaacaggCCCTCCAGGCAGCCAGACAGTTCCTTCTCCAACAGGCCTCTGGACTCAACTCCCCCAGCAGCAACGAGGTTAAACAGAGCCCTGTGCagGTGCCAATGTCCATGGCTATGTTGACCCCCCAGATGATCAGTCCTCAACAGATGCAGCAGATCCTGTCCCCTCCTCAGCTACAGGCCCTGCTGCAACAACAACAGGCCCTTATGCTTcagcagcTACAGGAGTACTATAagaagcagcaggagcagctgcatCTTCAGCTTCTgactcagcagcagcagcaggctggGAAGCAGGCAGCCAAAGAGCAGCAGATAGGTAACAAGCAGTTGGCTTTCCAGCAGCAGCTCATTCAGATGCAGCAACTTCAACAGCAGCACATGATCAACCTGCAGAGACAAGGCCTGGTCTCCCTACAGCCCACTAACCCCATGCAGAGCCTGCAGCAAGCCATGTGTCCTGGGGACCTGCAGCAGCTGTGGAAGGAGGTGTCGGGGGTGCAGTCTGCAGAGGAGGCCCTGAAGCAGCAGCACACTGGAGAGGGTCTGGACCTCAGCACCAACTCTACCTCAACCTCTTTCCCCaaagcaaacacacacagcagcctgCACAGCCTGCACAATGGACAGGACAACCACACCCCAaagagagacaggtacagagacagAGCAAGACTCTTTGAATGGATCTCCTCCTTCAGCAAGGCAGACCTCGGAGATGAACACCTCACGCCTTACTCCAAAGGTGGCCCGCTATCCAATAGccaccacgaGGAGCATGCAGGTTCCCATCCTCTCTATGGCCATGGAGAGTGTAAATGGCCTGGCTGCGAGGCGCTATGTGATGACATGGGACAGTTCATCAAGCATCTGAACAATGAACATGCTCTGGATGACCGCAGTACAGCCCAGTGCAGGGTACAGATGCAGGTGGTCCAACAGCTGGAGATAcagctGGCCAAGGAGAGTGAGCGGCTGCAGGCCATGATGACCCACCTGCACATGCGCCCATCGGAGCCAAAGCCTTTCAACCAACCTCTGAACCTGGCATCCAGTGGCTCCCTGctgaagagggagagcgaggtgtACCCCGAGGGTCTACCTCACCCCCCCACCTCCGCCACCACCCCCATCACCCCGCTCCGCCAGGGCCCCTCTGTCATCAGCTCCTCCAGTCTGCACTCACACTCACACCCGCACGGCGTGGGACCCATACGCAGGCGCATCGCAGACAAGTTCTGCACCCCCATCGCCTCAGGTATACGAGAGGAGCTGGCACAGAACTGTGAGTTCTATAAGAACGCTGATGTCAGACCTCCCTTCACCTACGCCTCTCTCATACGCCACgccATTCTGGAGGCTCCAGACAGGCAGCTGACTCTTAATGAGATCTATAACTGGTTTACACGAATGTTTGCCTACTTCAGGAGAAACACAGCCACATGGAAGAATGCTGTGCGCCACAACCTGAGTCTGCATAAGTGTTTTGTGAGGGTGGAGAACGTGAAGGGGGCCGTGTGGACGGTGGACGAAGTGGAATACCAAAAGAGAAGACCACCAAAGATGACCGGgaGTCCTACTCTGGTGAAGAATATGATTTCAGGCCTGGGCTTCGGTTCCCTAAACGCCAGCTACCAGgcggCCCTTGCAGAGAGCAGTTTAACTCTACTGAACAGCCAGGGCCTGGTTAACCCCTCATCTGCCGCCAGCCTCAACATGCTGCATGGGATGGGTCATGATGATGTCAGCTCCACTGTGGAACAGGTCAACAGCAACGGCAGCTGCAGCCCTACACTCAGCCCACAGCAGTatggACACCAGGTCCATGTGAAGGAGGAGCCCACTGAGATCGAGGAGGACAGCCGCTCCATGTCGCTCATGGCAACTGTCACTCAGAACATGGCATTGCCTAGCGATCGCGATGACCACGATTTGGATGATGAGCTTCCCACCGAGGAGCTGGAGTAGGATTGGATGAGCTGAACCAGTGGACGGGACTTTGAGGTTTAATCCCACCCGCTCCATTGGAGTGAAGCGAAATGATGACCACGTAAAAAAACAAGatagagataaaaaaaaaagataaagatCATGATTTTTATAAAGCAAGAAACCAACAACATTGACAAACAGGGTTAGACCTCCATTACATACCGACGCAAAAATAACACTCTGGAGCATTGCTTTATTCCCACACATTTTCACccacctcaccccctcctcctcaccccctccaCCCTCACCCGATGAGCAGCGTATTGTCAGAGAGACAGCTCTCAGTGGTGATATGGAGGGagggtcccctctcctctctcctctccctgttgaTTCACACAGATGGTCTGCCCGCCCTACAGTCCTTTAGTGCTGGTAGTTTGATGTTCACACCACTACAAtatacatacaggtgtgtgagagagagtgtggagagacacacacatcagaTCATGTGTATATATTGTTTGGAACAGTCACCAGGAGGTGTAtaactctcctcctcttctccggTCATGTTAGtttctttttcttttcttctTTTGCCTGAAAGAACTGCTGGGCTTATAGATGGAAGGAAGAACAGCGGTTTTCTCAAGGATTCACCTGCTCACACATCAGAAACCAAGCTTACAAACCAGTCAGTGATCCATAGGTGGGACTGAGACTGGATTGCAGGATTCTGCCCTATGCCCACTCTCTAGCCATTCTCTGCCCTATGCCCACTCTCTAGCCATTCTCTGCCCTATGCCCACTCTCTAGCCATTCTCTGCCCTATGCCCACTCTCTAGCCATTCTCTGCCCTATGCCCACTCTCTAGCCATTCTCTGCCCTATGCCCACTCTCTAGCCATTCTCTGTCCTATGCCCACTCTCTAGCCATTCTCTGCCCTATGCCCACTCTCTAGCCATTCTCTGTCCTATGCCCACTCTCTAGCCATTCTCTGCCCTATGCCCACTCTCTAGCCATTCTCTGCCCTATGCCCACTCTCTAGCCATTCTCTGCCCAAGCCAGACAAGACTCTCTTTACTCATTATGACAAACAAATAAAGAAGACAttgtttcccccccaaaaaagaccCTTTGGTGCTTTACTCCTCCTTCATGTGTGAGAGTGATGGGCACAGGGCAAcctgagagggggaggaaggagagatcaTCCACACAGAGATATCTGACTAAAATAGTTTATTATGGAATTTATTATGGAATAGAAAACATTTTATATCCAAAAAGTGGTGGCTTTTTCACTTCCTTCTTTCTTTGATGttatcttcatttattttttaGGATTCATATTTCCATGGTGATATAATTCTGTTTCAAAGTGTATTTTGTAAAAATTTAGTTTTTAGTTTTTATTAACTCTGCTTGTTCACACCATTCCAAACTAGTATTGGTGGCAAAGAAAGTGCAGTATTGTCCCAAAattccctataccccagcccaccATGAATACCTTTCTGTGTGTCTGGGTTTGCCAGTTTAGATGGCAGGAGATTGAGAATAGCACTTAGAATCGAGGGCCTCAGCTCCTGAGAACACTCACCAATAATCCCAACATTATCATCCATTTGTATTATTCCTTTTTAACTAACTTTCATTCCTTTTTATTTTATCTTCTCGTAGTTAGTTGAGAAACATCAGCTGTGATACAAAGCAATGCTTGAAAAAATATATTATGGCAGTCAGAGAATACCTCATCCCACAAATTTCTGCCCGGAAGTGTGTGCAAAATGTTAAAGAAGTAAGGGGGAATTCTTTGTGTGGGACACCAAAACGTGGCAACTCTGCTCAGTTTCATTTCAAAGTTCTAttgttactatagttactgtatagaAGCTGTCTGCAATTCACTGTGTGAGTTGAACTCAAAGGAATAGCACGTGAGATTTAAAGTCTTTTGTTTTCAGTGAGCATAAAAGCATTACCTTCTCTGCAGTGCCATACCAAATTTAAACACgttattttttatgtattttctgCTTTTTCTCccattttatttttgttacaGGTAACCAAAGAAATGTGTAGAAAACCAAAAACCCTGTAGTTTATTTTTCCCCTTTTGAGTTTTTCCTCTAAAGAACTGGCCAAAAGACAATAAACATCTGACATTTAAATGATTATTGTATTATCGTAACTCTTACGTTGAATTTGTTCATGACAGTACTGACCATTCCAAAAACCAAAGTATAAAATGCTAAATAGAATTTGGTGATGTTAAAATCTTTTTTACATATGTTTAACTGGTGCAAATGACGACTAACATTAGGCATGCTATGGTTGAAGGCCAAAAACAGTATTAACAaacaacacttttgcagttccaTAGATAAAGAAAGAAAGCACTTAGGATTTAAATCTCTATCTCTCCATGCTCAGGCTACCTGTGTTTCAAACACAACCCTATgacaggctctgctgtaggcaaGCCTAAGATGGGATTCAGGGTTAAAGATGACTAATAATTATCTTACCCTCATTAGGCACTTGAACACAAcatttatatacctgtatgtgacACTAGAAGCCAGCAAAAAAAGAAGTGGGCTGTTGTCAGTTGTCCATTAACTGGGATACCGtgtaaaacaaaaatacatttttattgcaCTGTAATAATGCATGTTTTGATTAATTTCCTCAACCAAAACAATATTTTCATTGTGAAACTCTATACATTCAAACATCCCTTTGTGCTATGCAGGAGAATGTCATTTTTCTGACCCGGCTCCCGGTTTGATTGAATAGGACCAAAAGTCCCATTGTCTAGCAGTGAACAGTTTACTTAATGTACTTTCTTTACTCCTCACCTACAGTATACTCTAGCAGACACAACAGTTTAACAAATACCAAAAAGGACAGGTGTTATAATAAATAGGAACAAAATGATAATGTTTCGCTCTTATAATGTCTTCATGCTCTCACGTTGCTATAGAAACACGTTCATAATCCCCTAGTCTGTGAGTAGTTGTGATAGAGACTGCTTGAAGCTGGCTGTCATTCCAAACATCACATCAGTAGACAAACGGAGGGTTTTTCAGAACAGACATACCATTATGACCATTTGTGATATTTACAGCAAAGAGAGAACAACTGACAAATGACAAAATCATACCAATGTGAAAGGAGCACACCAAGGGACATGTCAACTTATGTCTTTTTTCTAAAACAAAATTTGGGAACAGTTTTGTCAAATCAACTCTTGCACCATTTTCTTTGTTTTTTAATAAAGGAGTCTTTGTATTGACTTCCTGTGTAAAACAGCACTGTTTCCTGTAGAAGTAGCGTTATGATGCTTCACGTCATCAGACTGATTTATAACAAACAAAGTGGGAGAGGGACACCGAGAGTAAAAACCAAAAATAACACTACCTCCTTTTCAAAATGGTTCACAATAAAAGCAAATGGGAGACTGGAGACCAGAAATAtgtctggtttaaaaaaaaaatcttcctcAATAATAATAGTGAAATATACCAAAACACAGCTTACTGTTAATACACATTAAGTGGGGCTGAAAAAGCTTGTCTGGCTATCTGAACTCCAAATTCATGAGCGTGAGCGCAAAAACAAAGAGACGTTACAACAACATTACACCCCGTTAAAGATAGACTACCTCTCCTAAAACACCAGATAACTGGTGCGTTCTCCTAAGAGTGAAGAGTGAAGTGGTCACCATGTTTAAAAGGTCTACTCTCAGCTGTGTATTATTGGCTCTCTCCGTACTGTCCATTATCATAAAACTCTGTGAAAAGCCTCTTAACTGGGTGCTCTAATTGTATGCACGCATATTTATGAGCCGGCTTTGCCGGCAGCCAATGATAGTCCAGTCGTTAGCTGCGACTCAATGGGGCAGGAAGCTGGTTGTCAGGAGTGATGATGGGCAGAATGTATGAGTGCCCTGCACCCGCCattgggccacacacacactagtacacGCCAGCGGCCCACACTACACATGAATGGAGAGAACAGCTTTAAGATGGCAGCGATAAAGGAAACACACTCACCGGCTGTAGTCAGTGTTCAGTCGAAAGGGCCCTTAGTATCAGTCAATAAGCCTCAGAGCTGGGAATTAAAGCCCTGTGACATGGAGCTGGCCCTTCACGGCGAATAGTGGCCCCTGTCACTAGGAGCCGGGCCCCTGTTGGCCCCTTGGTTCAGACAGCTGAGGAGAGGCTCTGAGTAACTGAAGATACTATCCAAAGACAAACACAGAGCTTGCTGGGAGACGGACAATAATAACAGCTTACAAAGGAATGaatgattactactactattattgttATGATCCAAACTCTCACGAAAGAGGCGCTGCTGCATTCAGTAAATATATGATGTTTGAATTCTCATCCTTTAAGGTACACCTGTTTGCCAAGCTGTTTTATCAAGATGTAGATTGACATTCGTTGATGATGTTGACAGATCGCCATAGACACTTCTGTTCCTTCTCTGGTTTGGCTGTTATGATGTATTATTCTATATTAACACTTGGCTTAGCTCTCGAGGGCATTCTTTACCATTATGTCTTTTTGATTTTCTCTTTTCTTCATTTAGTTTTTGTAAAGCTTCCAGCTTGGATTCCTATACTGTATTGCTAATGCTGAAGTGTATGTATTTATCATATTAAGTGCTGCAGGTATCTTTGTTGAATAGTTAttcctttctttttttctctcgttTTCTTCATAAAAACGTCTGGGACGATGATTTTTTAAGTGTATTatctcaaaaaaaataaaagaattaAAGTTAGATAAGTGGTTTAGGTAACAGCTGTTTGTATATTTATCTTAGCTAGGTCTATTTTGATACCTTTTGTCTCTGTACTGCATTTTTAaggaaagaaaaagaaaaacaacagtaaaacaaCAAGTTGACTTCGTTATGTATTGTTGATACCTCAGAAGGACTTTTCTCTAAGACAGgaccaaaacctcagaaaaaatgagagaaagaggaaaatcATTGAAGAAAATATGTAGCCCCTCTCTTGCTTTTAAAGATGGACCAATGTAAAGGTGATGTTGTGGGTCCTTTATGTGCCAATATGtgtcctctgacccctgaccACAGTCATTCCTTTGATGACCTTTAACTTACAGCGGTCAATCACTCAATAGGACAACTGGGCGTGGCCCTCAATCAAACACCTGATGGCATTTGTCCAATTAGAATCCTAACCAAAGGTGTTGTGAGTGGCCATGGCTTACAAGCTAACAGACCAccacaaccataaccacaaccgTAACCAAACCAACCCTAGGCACTGATCTACCACAAGCTACTTCCCATACCTCAAACCATTCTTCGCTATCACCATCGCTATCATCTCTTGGACAAGCACTCTTCCTATTGGATCATTAGTGACTCCAGGGACCTAATTGGCCCCGCCCCTGCTCTATGATTGGACAGCTCTTCGGTGTCATGTTGAGGAAAAGGGAACGTAAAGGACAGTTGCCCATGTTATTATGAACTTcacagcccccccaaaaaatggaacTACCACTtcagctgtcctctggctgtccTCTGGTTGTATCTTAGGAATGTGTGTACATTCAGCTGTCCTCTGGTTGTATCTTAGGAATGTGTGTACATTCAGTGACTTTCTGTAACATTACTTAGTTTCTGTTTACCTCTCTTTTATCTTTTTATTTTGTTCTGTTTCTTCATTTTTTGAAAGTGTGACCCAGGGGAATTGGTAAAGTAGGAGCAGGCAGTGGTTTTTAAGATGGTCTAAAAGAGGTTTTAAAAAAGGCGACTTTGCCACCGAGACCTTTGCCCTTTCCCCCTTCCCTGGGTGGCCATGTAATGCCAGTCACTGCCCTTTCCCCCTTCCGTGGGTGGCCATGTAATGCCAGTCACTGCCCTTTCCCCCTTCCCTGGGTGGCCATGTAATGCCAGTCACTGCCCTTTCCCCCTTCCCTGGGTGGCCATGTAATGCCAGTCACTGCCCTTTCCCCCTTCCCTGGGTGGCCATGTAATGCCAGTCACTGCCCTTTCCCCCTTCCCTGGGTGGCCATGTAATGCCAGTCACTGTCCTTTCCTCATGCTGTATAAAACACACATATATCTGTGTATTTGTAACCTGAATCTTCTTGTGTCTGTCCATGCAGACAATAAAACAACTGTACAGTAGGTCTAGTTGCATGTAATCTGTACTAATTATTGACAATGGCATTATAAAATGCAATAAAATACTTATTACACTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU711794 lncRNA upstream 96626 56008179 ~ 56011041 (+) True G625968
TU711789 lncRNA upstream 103524 56002666 ~ 56004143 (+) True G625964
TU711785 lncRNA upstream 112480 55992773 ~ 55995187 (+) True G625960
TU711709 lncRNA upstream 214066 55893270 ~ 55893601 (+) True G625886
TU711708 lncRNA upstream 214516 55892929 ~ 55893151 (+) True G625885
TU712159 lncRNA downstream 13878 56309737 ~ 56309999 (+) True G626300
TU712181 lncRNA downstream 27881 56323740 ~ 56323941 (+) True G626310
TU712208 lncRNA downstream 46322 56342181 ~ 56369509 (+) True G626323
TU712295 lncRNA downstream 129875 56425734 ~ 56425974 (+) True G626400
TU712365 lncRNA downstream 229523 56525382 ~ 56525723 (+) True G626468
XM_021611136.2 mRNA upstream 309383 55792291 ~ 55798284 (+) True LOC110528971
XM_021609802.2 mRNA upstream 392954 55711635 ~ 55714713 (+) False LOC110528024
XM_021609800.2 mRNA upstream 599501 55505406 ~ 55508166 (+) True LOC110528022
XM_036983552.1 mRNA upstream 691588 55333097 ~ 55416079 (+) True LOC110528970
XM_021609796.2 mRNA upstream 791764 55313448 ~ 55315903 (+) True LOC110528019
XM_036984489.1 mRNA downstream 79340 56375199 ~ 56376062 (+) True mdfi
XM_036983584.1 mRNA downstream 310033 56605892 ~ 56715316 (+) False ppfia4
XM_036983580.1 mRNA downstream 310034 56605893 ~ 56715316 (+) False ppfia4
XM_036983578.1 mRNA downstream 310034 56605893 ~ 56716813 (+) False ppfia4
XM_036983579.1 mRNA downstream 310034 56605893 ~ 56716813 (+) False ppfia4
TU711835 other upstream 28738 56071054 ~ 56078929 (+) True G626004
TU710986 other upstream 392956 55711673 ~ 55714711 (+) True LOC110528024
TU710967 other upstream 634824 55472468 ~ 55472843 (+) True G625222
TU710771 other upstream 893756 55211705 ~ 55213911 (+) True G625038
TU710810 other upstream 899404 55207661 ~ 55208263 (+) True LOC110527126
TU712312 other downstream 186535 56482394 ~ 56485304 (+) True G626417
TU712869 other downstream 1023843 57319702 ~ 57323021 (+) True snrpe
TU712997 other downstream 1247023 57542882 ~ 57585844 (+) False G627035
TU712995 other downstream 1283191 57579050 ~ 57596051 (+) False G627035
TU712996 other downstream 1283191 57579050 ~ 57596051 (+) False G627035

Expression Profile