RNA id: XM_036983571.1


Basic Information

Item Value
RNA id XM_036983571.1
length 4245
RNA type mRNA
GC content 0.48
exon number 11
gene id tfeb
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 56482373 ~ 56593011 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAGTGAACACAGGTGACCTGGGACTCGCCAAGCCCCGCTGACAACATCACAGCCAGCGGAAATAAAAACAATTAGCAGCTGGAGTGCCAGTATCATCAATTTTTCTGAAATTATTAATGACACATAATgcctttttttttatatatatatttttttttagcgTAGTTTGTGTTTGAGGATACGAGCGATTCCACTGACCGCATTGGAGCGCACTGGTGGAAGACCCACGTAATTTCCAGAACCTGCACTCCCAACTTCGTATCATCTGACCTTCAGAGCGTcttcctctctctctcgggcTGGACTGTGGTGCATCTGCGTCTGcacgcccccccctcccccctcgccCTCCAGCCATGGCCTCGCGAGTAGGGCTGCGTCTGCAGCTAATGCGAGACCAGCTGCAGCAGGAGGAGCTGCGGGAGCGGCAACAGCAGCAGAATGCGGCGCTGCAGTACATTCAACAGCAGAGTATGTCTGTCCCTGCTCCCAGCCCCGCCATCAACGCTCCACAACACTACCAGAGCATGCAGGTTCCTGTTGAGGTGCTCAAGgtcCAGACTCACTTGGAGAACCCAACAGACTACCACATCCGCCAGTCCCAGAGACAACAGGTGAAGGAGTACCTCTCCACCACCTACGCCACCAAGCAGACGGTGCATGCAGTAACAGGTGTGGTGcagccctcccctccccctccccaccactCCCCCCGGCTCCGTACGGAGCAGCTCATCACAGGAAACAGCGCCCCCAATAGCCCCATGGCCATGCTCAACATCGGCTCCAGCCACGAGAACGAGGTACACGAGATGGATGAGGTCATCGATGACATCATCAGCATGCAGTCGAGCTATGATGACATCCAGCAGTATATTGACCCTCTTCAGACGTCCAACACTCTCCCTCTGTCCAGCAGTCACCTGGACGTGTACACGGGCCCTGGGATGACCGGTCAATCTATCGCCATGACAAGCAATTCCTGCCCTGCCAACCTGGCCATCAAACGAGAGCTGACGGAAACCCGTGCAATGGccaaagagagacagaagaaagaCAACCACAACCTGAttgagaggaggaggaggttcaACATCAACGACCGCATTAAAGAGCTGGGCGGCATGATCCCCAAAACCAACGACCTGGACGTGCGCTGGAATAAGGGCACTATTCTGAGGGCATCCGTAGAGTACATCAAGCGTATGCAGAAGGACATGCAGAggaccagagaggtagagaacaACTTCAAGAGGATGGAGATGGCCAACAAACAGCTGTGGCTGCGCAtcgagGAGTTGGAGATGCAGGCTCGTCTGCACGGCCTCCCCAGCTCCTCTCCATCTGGGATGGGTTCTGGGGACCTGATGGGTTCCTACATTAAACAGGAAACCAGCCCTGAGGAGAagctccagcagcagcagcaggcccagCACCAAGCTCTTTCCCAGGGccaacaacacctccaccaccCCCAGTCCCACCACATTCAGCCCCAGCAGGGCCAGCCCAGACAGctgcctcctctcccccctcacctccagCCCCAACTTCCCCTCCAGTACCCAGCTGTGGGCAGCTCTCAGCCCTTTGACTTTGCCCAGTCGCTGGACTTGTGTGACGGGGTTCCTGGCTACCCGGAGGGCTTGTCAGGGCTAGGGGAGCTTGGCCTCCTTGGTACCCAGGGAAGGAGAGGCGACCTGGGCTTCCTGATGATGGACGAGCCCCTGTCTCCTCTAGGTGGagaccctctgctctctgccatGTCCCCTGAGGCCTCGGTTGACTCCAGCCGCAGATCCAGCTTCAGCATAGAGGacacagatatactgtagagggagtttacacacacacagacacacacacacacacacacacacagacacaggcacataTGGTACGTACAGAACACCCAATGGACATGCACCCCGAGAGCACAGATATACTGTGATATATGCTTTTGCTCTGTTCCTCAACCCTGCTACATATGCACTCCAGACGCCCTCACATACACTGTAAGCACTCGCGtagacactgtacacacactgagacatacttaaacacacacactcaaaattcTCATGGATGCACACCCTTAACACTCACATTCAACAGCAATATGAGAAACCAAACCCATGTTTCGGATTGCAATAGTTGTTCCCTACCACTGTAAATATCAGAGCACCTCTAAATGATACACAATCtagtacacacacaaatacacaacgAGCACAGACCGCTTCTTGTTCACTCTAACGCAGAAGGGCCCCTGTTATTTGAAGGGAAATATGTGAGGGACTGCCAacggtttaacacacacacacacacacacacacacacacaccgttcttCTGTAAAACACACTGCCATGACCTCTATGGTACTGCCATCTCCTGTGTGATCTATGACCTTTAGCCTTTAGGGTACTGCCAAGTCTACtccatgacctctgacccctgtgtgAATGTTGAGGAGAGATGGATTGGCCCTGCATTGTGAGATAGTGTAGCGATTGAAGAGGTTATGTCGCTCCACAGTGTAAGTAATTCCACGTAGCGACTCAGGATCTTCTGTAGCCCAGTCCTTAACCTGCCAACGTGCCTTGTGTTAGCCACCTGAAGCCCCACTCTATCTGGGTGGAGAGTGAAGGAGTGGGTTGTGTTTTAGTATATTGTagtgcagggttccccaactggcggcctgTGCTACATACATACCCCGCAAGTTTTCcgagacactttttttttttaaatgattgtttACATAAAAGACTGTTAAATGCCAGAAAATCAGCTCCAAGTAATTTTAGGGGTAGTAAAATAAAAGTATTCCCAAGCGTAAtagatgtgatcgtatacaaatgtaagaaaggtttgaaattatgttttgatatctgtttgggcttcttgcagtcaattagCAGTCTACAAAttctttgtaattatgttctggccccctgaccatccactcaaTAAATAATTGgcccgcagctgaatctagttgatgatccctgttgtAGTTTGTAGTTAGGAGATAGAGGAGCAGTCAAATAGATTGGTCTGTAGTGTCGTATTCCACACTGTAAAAACACAGCACCagcctaacacacacacgcacacaaagcaGTGTGCCATTAGGCTGTGTTCAAATCAACACTTTGAGCGAGACTTCAGTACCTCACCCGGTTTGTGCTTGTAGAACTGCCAGCTTTGGGTCAGCCAGATAAAACTACACACACTCACCAGGTACAAACCAAACCAACCCTGTAGAAGCCAAACTACGGCTGTAcaatacatgaataaactaacggGTAACAAATGAGTTTGGATGAGGGACTAGGGGtaacactttgatttgatatggCTTATGATCAGTAAAGAAAAACAGGAAGAAACATGATGATTTAAAAGGTATTTGTTTGTATTCTTGTTTATAGTTGTTTTTTATCTCCCAAAGCACTGGAACCTATATTTTATTGACTTTGTACATGAAATAATTTATGAAATGAGTTTTATTTCATATGTTTTATGCCACTAAGCCACTTAAATGTATTTGtccttttttatttgattttattccAAAAGTACCTTTTTCCTCTAACAGCCATCTAAATATGAAAGTATTTAAGCCTCTAGTGTGAAAGTGTACGACCAGTGGGGAGACATATTCTATACTTTTCTTTGTGTGAAGAACTGTTCAAATTTCACCTGAGAACAACATGTACAATTATATTATGCCATTTGTATATTGATTGGAATTGGTTTCTCTTTTTTAACCTATAGAAATTGGAACCAGAGACTGAGAGgtgatttatttgattttattctGTTTTAATTGTGCTTTTTGTGAATGTGAAGATGGCCTGTAGTACTGGTCCCCAGCCAAACCCAAATACCACAAGAGAAGGGTATTTTCCTTCATGGTCTTTAATTTCCATGGAGATAACTACCTTCTAATGGTACTCAGAAATACCATCGAGGAGATCCGTTGGCATAACCTTGAACAGACccgactttctctctctctgtctgccagagTTTGCCTTCATCCTaatcaattgttttatttttgtttttattgtcCAGCCGACACGCCAAAGAGCTTGTCTGCAGATAATGTGGTGTGTTGTCCCCTCTTTGACTGTCCCCCTCCCCCATGTCACTGTATGGGACTGAAACTGGCTGACTGGGCAGGGGAAACTGGCATTCTGGTTTTGCTTTGGATATAAAATGTTTTACCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU712297 lncRNA downstream 55414 56426750 ~ 56426959 (-) True G626402
TU712272 lncRNA downstream 83059 56399103 ~ 56399314 (-) True G626384
TU712267 lncRNA downstream 87802 56394347 ~ 56394571 (-) True G626379
TU712257 lncRNA downstream 94718 56387434 ~ 56387655 (-) True G626369
TU712255 lncRNA downstream 95902 56386175 ~ 56386471 (-) True G626367
TU713274 lncRNA upstream 155714 56748725 ~ 56750461 (-) True G627281
TU713288 lncRNA upstream 221586 56814597 ~ 56814801 (-) True G627295
TU713295 lncRNA upstream 224291 56817302 ~ 56817561 (-) True G627300
TU713300 lncRNA upstream 230109 56823120 ~ 56823415 (-) True G627305
TU713301 lncRNA upstream 231714 56824725 ~ 56825042 (-) True G627306
XM_021609801.2 mRNA downstream 747352 55727429 ~ 55735021 (-) True LOC110528023
XM_036981871.1 mRNA downstream 783065 55620553 ~ 55699308 (-) False pax7b
XM_021609806.2 mRNA upstream 6232 56599243 ~ 56604594 (-) True tmem183a
NM_001124727.1 mRNA upstream 123865 56716876 ~ 56720187 (-) True myog
XM_021609808.2 mRNA upstream 164055 56757066 ~ 56772425 (-) False mdm4
XM_021609807.2 mRNA upstream 164055 56757066 ~ 56772426 (-) True mdm4
XM_021609810.2 mRNA upstream 179804 56772815 ~ 56796284 (-) False sort1a
TU711411 other downstream 1048301 55433456 ~ 55434072 (-) True LOC110528020
TU711245 other downstream 1310173 55164492 ~ 55172200 (-) False G625472
TU711185 other downstream 1406977 55072479 ~ 55075396 (-) True G625426
TU708601 other downstream 3159542 53305536 ~ 53322831 (-) True G622985
TU705034 other downstream 5523833 50956271 ~ 50958540 (-) True G619733
TU713244 other upstream 98312 56691323 ~ 56696091 (-) True G627254
TU713310 other upstream 241574 56834585 ~ 56835092 (-) True G627314
TU713320 other upstream 253951 56846962 ~ 56852301 (-) True G627323
TU713292 other upstream 260556 56853567 ~ 56869375 (-) False vamp3
TU713290 other upstream 260806 56853817 ~ 56869375 (-) False vamp3

Expression Profile