RNA id: XM_036983575.1


Basic Information

Item Value
RNA id XM_036983575.1
length 6154
RNA type mRNA
GC content 0.52
exon number 30
gene id ppfia4
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 56605892 ~ 56716813 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGCGTGGCATAATAGCGCGTCGACGCGCAAGGTGGTGCTGATGTGAGGGGTTCTTCTGCCGCTAGAgcaaatgttacatttttttatggAGAGAGCGTTCGAAGATTTTCCGTTGTCTTAACACAATACTGAATTTGTCCGCTGGTCAAAAGGGGGGAAATAAACGACGTGCGACCATGTGGATTGCTGTGGTCACATGCGGTGACATAGATGTAAATGATGCTTAAATTATTTTGTAGAAAGCGGCGAGTTGCTCGGTTTCCGTAGCGGTAGTGGTGACAGCTGCGGGAGCCCgtgtgtgagggagagggaggagtggtgtgtgtgtctgctcggTGGCGGTGTGGAGATGGCAGCGGGGGGTTGAGAAGGCAGATGCCGCAGACATGCCTAGCTGGCTATCGCCGTCTCTCTGTGAAAAGGTTATCGGCAACTGGTGTCTGTTGAAGCAAAAGAGCGCCTAATAAACCTCGGAACCCAGATCAGTTGATTGGAACATGTCATCGACAGGGTCAGCGGCGGCATCACAGTGTATCTGATCCGTCAATCAAATCACACGCACTGGAATTACATGAGTGGCGCGCGGGGTTGGGCGGATGTGCCAGATGAACCATCGCCGGCAGACATGGAAAAAAGGTCAACAATCGCCTGATTTAAATTTCATGATTCTGGAAGAAAGTTTTTCATTAAGATGATTAATGCCATTTTCTAATAATCGCGATCATCAACGATAAATAGTCTATTCACATCAATCAATCATTGTGTTTATTAGCCAGCGGCAGCGAGTAGCCTACAGAGAGCAGAGGATATCGCCCATATCATTACAGCGATACACGCCTATAGGACTATAAGCACCAAGCAGCGAATATGATGTGCGAGGTGATGCCAACGATCACCGAGGGGGACTCGGGGGGTCCTCCCCGGGGTGGAGGGGCTCAGAACGGCTCGGACCCGGAAGCCAACTTCGAACAACTGATGGTCAACATGCTGGACGAGAGAGATAAGCTGCTGGAGTCCCTGCGCGAGACCCAGGAGACACTCATCCAATCACAGACCAAGCTGCAGGGTGCGCTGCATGAAAGGGATGTGCTCCAGCGTCAGATCTACGCGGCTCTACCTCAGGAGTTTGCCACTCTGACCAAGGAGCTGAACGTGTGTCGGGAACAGCTgctggagaaagaagaggagataTCTGAACTGAAAGCTGAGAGGAACAACACCAGGCTTCTCTTGGAACATCTGGAGTGTCTGGTGTCTCGTCACGAGCGCAGTCTGAGGATGACCGTGGTGAAGAGACAAGCTCCTCCTCCCTCTGGGGTCTCCAGCGAGGTGGAGGTCCTCAAGGCCCTCAAGTCCCTGTTCGAACACCACAAAGCCCTGGATGAGAAGGTGCGTGAGAGGCTTCGGGTGGCTCTTGAGAGAGTGACTACACTAGAGGGACAGTTATCAGCCACAActcaggagctgATCATTGTGAggcagaggaaggagggagaatcTTTGGACAGGAATGATGCTACCAAACCCACCTGGaagAGGCTACCTAACGGTTCCATAGACGCCCATGACGATGGCAGCAGGTCAGTGGAGCTGCAGGAGCTTCTGGATCGGACCAATCATGAGCTGGCTCAGAGCCGTGAGCGTTCGGGCACGCTCAGTACACGAGTGGCAGAGCTGGAGGCGGAGCTAGCCAACACTCGCCGAGACCTGAGTCGCAGCGAGGAGCTGTCAGTCaaacaacagagggaacagagagagGGGCTGGCGCAGAGGGAGGATATGGAGGAGCGGATTACAACGTTAGAGAAACGTTACCTGGCCGCTCAGAGGGAAACCACACACATCCACGACCTCAACGACAAACTGGAGAACGAACTGGTTACCAAGGACTCTCTGCAccgacagAGTGAGGAGAAGGTGCGTCAGCTGCAGGAGTTGTTAGAGTTGGCAGAGCAGAGGCTGGCTCAGACCATGAGGAAGGCTGAGACACTACCAGAGGTGGAGGCAGAGTTGGCACAGAGGGTGGCAGCCCTCACCAAGGCCGAGGAGCGACATGGCAACGTTGAGGAGCGACTCAGACAGCTGGAGTCACAACTGGAGGAGAAGAACCAGGAActgagcaggGCACgtcagagagagaagatgaaTGAAGAACACAACAAGCGTTTGTCTGACACAGTAGACCGTCTGCTCACTGAGTCTAACGAGAGACTGCAGCTTCACCTTAAAGAACGCATGGCAGCACTGGAGGACAAGAACTCCCTGATTCAGGATCTGGAGAACTCCCAGAAACAGCTGGAGGAGTTCCACCACACCAGGGAGCGTCTGATTGGTGAGATTGAGAAGCTGCGGAATGAGATCGACCACTTGAAACGCCGGAGTGGAGTGTTTGGAGATGGATCACACCCACggtctCACATGGGCAGTGCCAGTGACCTGCGTTTCTCAGTGGTAGAAGGGCAGGATGGGCACTACAGCTCTGCTGTCATCAGACGGGCACAGAAGGGCCGCCTGGCAGCGCTACGCAACGAACCCAACAAGGTGTGTGCGGTGTTTGAGCAGGAATACTCATCTCTACGTGGCAGTGTCAGTCACCTCCTGGGCAGTGATGTGGAGGCTGAGTCAGACCTAGATGATGATGTTAGCTCCGTCCTCCTTTCACCCAGCGGCCAATCAGATGCACAGACTCTGGCTCTGATGTTGCAGGAGCAGCTGGATGCCATCAACGAGGAGATCAGGATGATCCAGGTGGAGAGGGAGTCTGCTGACCTTAGGGCAGATGAGATAGAGTCTCGTGTGAACAGTGGTAGCATGGACGGACTCAACGTTACACTCCGCCCCCGAACCATGCCCAGCTCAGCCACTGCCCAGTCCCTGGCTTCCTCCTCGTCCCCTCCCACCAGCGGACGCTCTACCCCCAAACACAACACCCACAACGCCAGCCACCAGCTGGGAATCATGACCCTGCCTAGCGACTTAAGGAAACACCGTAGAAAAATAGCAtctccaGTGGAAGCTCGTGAGGACAAGGCTACTATCAAGTGTGAGacgtctcccccctcctctccccgcaGTCTGAGACTGGAGACCAACTTCGCCCAGCTCACTGGCAGTCTGGAGGACGGAcgagggggtAAAGCGAAGAAGGGCATCAAGTCATCTATAGGTCGTCTGTTTGGGAAGAGCAAGGAGAAGggcaggatggagggaggagggacactggggagggagggacaccctctgcctgccctgatgcCGGGAGTAGACTTTGAGATGAGCATCGGAGACACCATGACTCTGGGCAAGCTGGGCacgcaggcagagagagaccGCAGGATGAAGAAGAAaCATGAGCTGCTAGAGGAGGCCAGGAGGAGAGGACTGCCCTTCGCTCAGTGGGATGGACCAACTGTGGTCTCCTGGCTAGAGTTGTGGGTGGGGATGCCCGCCTGGTACGTGGCAGCGTGTCGTGCCAACGTGAAGAGCGGTGCCATCATGTCGGCCCTGTCGGACACAGAGATCCAGAGGGAGATTGGCATCAGTAACCCCCTGCACCGCCTCAAACTGAGACTGGCCATCCAGGAGATGGTGTCCCTCACCAGCCCCTCTGCCCCGCTCACCTCTAGAacgTCCTCCGGAAATGTGTGGTTAACCCATGAAGAGATGGAGAACCTGGCTTCCTCCACTAAAGCGGAGAATGAGGAGGGCAGCTGGGCTCAGACTCTGGCATACGGGGATATGAACCATGAGTGGATCGGTAATGAGTGGCTGCCCAGCCTGGGTCTGCCTCAGTACCGCTCCTACTTCATGGAGTGTCTGGTGGACGCCCGCATGCTGGACCACCTGACCAAGAAAGACCTCCGCACACACCTCAAGATGGTTGACAGCTTTCACAGGGCCAGTCTGCAGTATGGGATTATGTGCTTGAAGAGACTCAATTACGACAGGAAAGACCTGGACCGTCGTAGAGAGGAGAGCATGCACGACATGAAAGaTGCGTTAGTGTGGACCAATGAGCAGGTAGTGCACTGGGTCCAGAGTATAGGTCTGAAGGACTACAATACCAACCTGATGGAGAGTGGAGTCCACGGGGCTCTCATTGCTCTGGATGAGACCTTCGACTACAGCAGCCTGGCTCTCATATTGCAGATCCCCATGCagaacacacaggcTCGGCAGGTTCTAGAGAGAGAGTTCAACAACGTCCTGGCTCTGGGCACTGACCGCAGACTGGAGGAGagtgGGGATGATAAGACGTTCCGCCGCTCTCCATCGTGGCGTAAGCGTTTCCGAGcgcgggagggaggagggggaatgGGCATGATGGCGGGCTCCATGGAAACACTGCCCGCTGGGTTCCGTATGCCCTCCATGTCCATGCCCCCATCCATGGCCCTGGTGCCCAGGAAACAGCTGCAaccagaagCTCCTCCCCCGGCTCCCCAGAGACTCGACCCCTCTGCTGTACGGACGTACTCATGCTAACTCCACTCCACTTACTAACAGGAGCTAACGTTAACAGTTTATTCCCATGACCTGTATGGACACATGCTTGCGGCCTTTCGAGAGTGACATGCCAAATTTGGGAGAGATCTTGACGTTAAGGGACCTGTATCCAGCGTCACCTCTCACCTTCTCCGTGGGACACGTGCAATTCGGAGGTGACCTCTGACTTTTTGACCTTTGAACTCTGAGCGTGCTCATTGCCACACTCGCTGCTGTAAAGGAGACTCGGCCCAGTTGCTATTCCCAGTAAACCCAGTACCCCCAGTAGCCTTGTTGTTGTGGTGTCGTGCTCCCGCATAGTCCTAATTCCTAATCTGTCGGTTCTAGTCCTAATTCTTTATCTGTGGGTTCTATTCCTAATTCCTACTCTGTGGGTTCTAGTCCTAATTCCGAATCTGTGAGTACTAGTCCTAATTCCTACTCTGTGGGTTCTAGTCCTAATTCCGAATCTCTGGGTTCTAGTCCTAATTCCTACTCTGTGGGTTCTAGACCTAATTGCTAATTTGTGGGTTCTAGTCTAACTCTACTCTAGCTCCTGGGTGTTTTCCACCTACACGTCGTCCCCTCGGTTATGCAAGGTATTAATCATTTATTGTCTCTCTGTAAATAAAATGGATGACAtatgtttttttatataaatatatataaatatatatattggaaTTATTTATGGAGAATATTATAATATCATTGCTGTATGAAACCCAATGCCCTGTATTCGGTGGTGACTGTTCTATTTGTGTGTTGGACCTCTGTGTGTCTTATATGCTGTCAGTGTCTGGAGTTATATGAAGGACTCACTAAGCAGGGGCCTGTTACTCTATGTGATACTACTACTATGATTCTCAGCCACAGGTTCTTGGGTCCAGACCTAAACGGTTCAGTTACCTTTCCTGCCTTTTATCCctactttccttctctcttttcaTATCTCCTATCCTCCTTTCCCATCTccttttctcctttcctcctgCTCTTTCCTATCTCCACTTGTTTCCTTCCTCTATTTGACACTGATGTAGCTACCATGAGTAGAGTAGGTGATCCTGTAGATATGAGAGGATACAGGATGAGCTGTGTGTGTAAATGAAAGCAATAGGCTCCAATATTTGAGACTTAAGGGAAACAGCATGTTACGAAAGCCAAACCCTAGACTAACCTCCATGGATGGATGGTGTTGTTTTTCTCTACTTcgtttcaaatcaaacagtaaaTTGCTGCTAGGCATCAGCCAAACGAAATCCTCACAAACAGGACACCTGACAGAGACAGTGATGATGCCATATATGGACTTTTCCCCTGCCGCCCCTTTCCTGTCCAGTTGCCATGGGGATGTGAAAGTGGCCAATGATGCTGCCCGAGCACTAGCACGTGTTGTGTGTAtgacctcctctcctccaatgagagagctctgtcagtgaaCTAGTGAAGTGTTGGATGGGtgtatttcttttgattttacagCCAATGTTTTAAAGGTGTCTAAAAGATGTAATGTGTTACTGTGGCAGCTAcgagtactgtgtgtgtatttattccAGGTGTGAAATGATGCTGACAAATCAAGATTTTATTATTTGGCTATTTAAAAAGTGTATTGTATTTATGACACTATAGACATAAGTAAAGCTGTTTTTTGTAAAGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU712365 lncRNA upstream 80171 56525382 ~ 56525723 (+) True G626468
TU712295 lncRNA upstream 179920 56425734 ~ 56425974 (+) True G626400
TU712208 lncRNA upstream 236385 56342181 ~ 56369509 (+) True G626323
TU712181 lncRNA upstream 281953 56323740 ~ 56323941 (+) True G626310
TU712159 lncRNA upstream 295895 56309737 ~ 56309999 (+) True G626300
TU712506 lncRNA downstream 11587 56728400 ~ 56728632 (+) True G626594
TU712521 lncRNA downstream 21148 56737961 ~ 56740360 (+) True G626598
TU712522 lncRNA downstream 32326 56749139 ~ 56750289 (+) True G626599
TU712527 lncRNA downstream 34214 56751027 ~ 56766586 (+) False LOC110528029
TU712525 lncRNA downstream 37955 56754768 ~ 56766586 (+) True LOC110528029
XM_036984489.1 mRNA upstream 229832 56375199 ~ 56376062 (+) True mdfi
XM_036983563.1 mRNA upstream 310035 56133962 ~ 56295859 (+) False foxp4
XR_002474181.2 mRNA downstream 33991 56750804 ~ 56759223 (+) False LOC110528029
XR_005052614.1 mRNA downstream 100468 56817281 ~ 56842143 (+) False LOC110528032
XM_036983591.1 mRNA downstream 100469 56817282 ~ 56842143 (+) False LOC110528032
XM_036984435.1 mRNA downstream 131693 56848506 ~ 56849449 (+) True LOC110528976
XM_036983597.1 mRNA downstream 301732 57018545 ~ 57029242 (+) False LOC110528036
TU712312 other upstream 120590 56482394 ~ 56485304 (+) True G626417
TU711835 other upstream 526965 56071054 ~ 56078929 (+) True G626004
TU710986 other upstream 891183 55711673 ~ 55714711 (+) True LOC110528024
TU710967 other upstream 1133051 55472468 ~ 55472843 (+) True G625222
TU710771 other upstream 1391983 55211705 ~ 55213911 (+) True G625038
TU712869 other downstream 602889 57319702 ~ 57323021 (+) True snrpe
TU712997 other downstream 826069 57542882 ~ 57585844 (+) False G627035
TU712995 other downstream 862237 57579050 ~ 57596051 (+) False G627035
TU712996 other downstream 862237 57579050 ~ 57596051 (+) False G627035
TU712999 other downstream 862237 57579050 ~ 57596051 (+) True G627035