RNA id: XM_036983588.1



Basic Information


Item Value
RNA id XM_036983588.1
length 5269
RNA type mRNA
GC content 0.52
exon number 30
gene id ppfia4
representative False

Chromosome Information


Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 56605892 ~ 56716813 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGCATAGTACAGTAGTGTAGCTCTGTCGTTTGTCCCAGCAGAGAGGAACCTCCTTTATTCCAACCAGGCTCACTGTCACACAGCAGGGATTTAGGAGCACATGAGacacaagctctctctctctatctctctgggaTTGGTTGGTCTGGTTTGGGATCTGATATGATATTCCGTCATGAATCCAACAGTGAAGATCCATCTCCAGAATGGGATCCACTTTAACACCTACATGTACCAGGAGTTTGCCACTCTGACCAAGGAGCTGAACGTGTGTCGGGAACAGCTgctggagaaagaagaggagataTCTGAACTGAAAGCTGAGAGGAACAACACCAGGCTTCTCTTGGAACATCTGGAGTGTCTGGTGTCTCGTCACGAGCGCAGTCTGAGGATGACCGTGGTGAAGAGACAAGCTCCTCCTCCCTCTGGGGTCTCCAGCGAGGTGGAGGTCCTCAAGGCCCTCAAGTCCCTGTTCGAACACCACAAAGCCCTGGATGAGAAGGTGCGTGAGAGGCTTCGGGTGGCTCTTGAGAGAGTGACTACACTAGAGGGACAGTTATCAGCCACAActcaggagctgATCATTGTGAggcagaggaaggagggagaatcTTTGGACAGGAATGATGCTACCAAACCCACCTGGaagAGGCTACCTAACGGTTCCATAGACGCCCATGACGATGGCAGCAGGTCAGTGGAGCTGCAGGAGCTTCTGGATCGGACCAATCATGAGCTGGCTCAGAGCCGTGAGCGTTCGGGCACGCTCAGTACACGAGTGGCAGAGCTGGAGGCGGAGCTAGCCAACACTCGCCGAGACCTGAGTCGCAGCGAGGAGCTGTCAGTCaaacaacagagggaacagagagagGGGCTGGCGCAGAGGGAGGATATGGAGGAGCGGATTACAACGTTAGAGAAACGTTACCTGGCCGCTCAGAGGGAAACCACACACATCCACGACCTCAACGACAAACTGGAGAACGAACTGGTTACCAAGGACTCTCTGCAccgacagAGTGAGGAGAAGGTGCGTCAGCTGCAGGAGTTGTTAGAGTTGGCAGAGCAGAGGCTGGCTCAGACCATGAGGAAGGCTGAGACACTACCAGAGGTGGAGGCAGAGTTGGCACAGAGGGTGGCAGCCCTCACCAAGGCCGAGGAGCGACATGGCAACGTTGAGGAGCGACTCAGACAGCTGGAGTCACAACTGGAGGAGAAGAACCAGGAActgagcaggGCACgtcagagagagaagatgaaTGAAGAACACAACAAGCGTTTGTCTGACACAGTAGACCGTCTGCTCACTGAGTCTAACGAGAGACTGCAGCTTCACCTTAAAGAACGCATGGCAGCACTGGAGGACAAGAACTCCCTGATTCAGGATCTGGAGAACTCCCAGAAACAGCTGGAGGAGTTCCACCACACCAGGGAGCGTCTGATTGGTGAGATTGAGAAGCTGCGGAATGAGATCGACCACTTGAAACGCCGGAGTGGAGTGTTTGGAGATGGATCACACCCACggtctCACATGGGCAGTGCCAGTGACCTGCGTTTCTCAGTGGTAGAAGGGCAGGATGGGCACTACAGCTCTGCTGTCATCAGACGGGCACAGAAGGGCCGCCTGGCAGCGCTACGCAACGAACCCAACAAGGTGTGTGCGGTGTTTGAGCAGGAATACTCATCTCTACGTGGCAGTGTCAGTCACCTCCTGGGCAGTGATGTGGAGGCTGAGTCAGACCTAGATGATGATGTTAGCTCCGTCCTCCTTTCACCCAGCGGCCAATCAGATGCACAGACTCTGGCTCTGATGTTGCAGGAGCAGCTGGATGCCATCAACGAGGAGATCAGGATGATCCAGGTGGAGAGGGAGTCTGCTGACCTTAGGGCAGATGAGATAGAGTCTCGTGTGAACAGTGGTAGCATGGACGGACTCAACGTTACACTCCGCCCCCGAACCATGCCCAGCTCAGCCACTGCCCAGTCCCTGGCTTCCTCCTCGTCCCCTCCCACCAGCGGACGCTCTACCCCCAAACACAACACCCACAACGCCAGCCACCAGCTGGGAATCATGACCCTGCCTAGCGACTTAAGGAAACACCGTAGAAAAATAGCAtctccaGTGGAAGCTCGTGAGGACAAGGCTACTATCAAGTGTGAGacgtctcccccctcctctccccgcaGTCTGAGACTGGAGACCAACTTCGCCCAGCTCACTGGCAGTCTGGAGGACGGAcgagggggtAAAGCGAAGAAGGGCATCAAGTCATCTATAGGTCGTCTGTTTGGGAAGAGCAAGGAGAAGggcaggatggagggaggagggacactggggagggagggacaccctctgcctgccctgatgcCGGGAGTAGACTTTGAGATGAGCATCGGAGACACCATGACTCTGGGCAAGCTGGGCacgcaggcagagagagaccGCAGGATGAAGAAGAAaCATGAGCTGCTAGAGGAGGCCAGGAGGAGAGGACTGCCCTTCGCTCAGTGGGATGGACCAACTGTGGTCTCCTGGCTAGAGTTGTGGGTGGGGATGCCCGCCTGGTACGTGGCAGCGTGTCGTGCCAACGTGAAGAGCGGTGCCATCATGTCGGCCCTGTCGGACACAGAGATCCAGAGGGAGATTGGCATCAGTAACCCCCTGCACCGCCTCAAACTGAGACTGGCCATCCAGGAGATGGTGTCCCTCACCAGCCCCTCTGCCCCGCTCACCTCTAGAacgTCCTCCGGAAATGTGTGGTTAACCCATGAAGAGATGGAGAACCTGGCTTCCTCCACTAAAGCGGAGAATGAGGAGGGCAGCTGGGCTCAGACTCTGGCATACGGGGATATGAACCATGAGTGGATCGGTAATGAGTGGCTGCCCAGCCTGGGTCTGCCTCAGTACCGCTCCTACTTCATGGAGTGTCTGGTGGACGCCCGCATGCTGGACCACCTGACCAAGAAAGACCTCCGCACACACCTCAAGATGGTTGACAGCTTTCACAGGGCCAGTCTGCAGTATGGGATTATGTGCTTGAAGAGACTCAATTACGACAGGAAAGACCTGGACCGTCGTAGAGAGGAGAGCATGCACGACATGAAAGaTGCGTTAGTGTGGACCAATGAGCAGGTAGTGCACTGGGTCCAGAGTATAGGTCTGAAGGACTACAATACCAACCTGATGGAGAGTGGAGTCCACGGGGCTCTCATTGCTCTGGATGAGACCTTCGACTACAGCAGCCTGGCTCTCATATTGCAGATCCCCATGCagaacacacaggcTCGGCAGGTTCTAGAGAGAGAGTTCAACAACGTCCTGGCTCTGGGCACTGACCGCAGACTGGAGGAGagtgGGGATGATAAGACGTTCCGCCGCTCTCCATCGTGGCGTAAGCGTTTCCGAGcgcgggagggaggagggggaatgGGCATGATGGCGGGCTCCATGGAAACACTGCCCGCTGGGTTCCGTATGCCCTCCATGTCCATGCCCCCATCCATGGCCCTGGTGCCCAGGAAACAGCTGCAaccagaagCTCCTCCCCCGGCTCCCCAGAGACTCGACCCCTCTGCTGTACGGACGTACTCATGCTAACTCCACTCCACTTACTAACAGGAGCTAACGTTAACAGTTTATTCCCATGACCTGTATGGACACATGCTTGCGGCCTTTCGAGAGTGACATGCCAAATTTGGGAGAGATCTTGACGTTAAGGGACCTGTATCCAGCGTCACCTCTCACCTTCTCCGTGGGACACGTGCAATTCGGAGGTGACCTCTGACTTTTTGACCTTTGAACTCTGAGCGTGCTCATTGCCACACTCGCTGCTGTAAAGGAGACTCGGCCCAGTTGCTATTCCCAGTAAACCCAGTACCCCCAGTAGCCTTGTTGTTGTGGTGTCGTGCTCCCGCATAGTCCTAATTCCTAATCTGTCGGTTCTAGTCCTAATTCTTTATCTGTGGGTTCTATTCCTAATTCCTACTCTGTGGGTTCTAGTCCTAATTCCGAATCTGTGAGTACTAGTCCTAATTCCTACTCTGTGGGTTCTAGTCCTAATTCCGAATCTCTGGGTTCTAGTCCTAATTCCTACTCTGTGGGTTCTAGACCTAATTGCTAATTTGTGGGTTCTAGTCTAACTCTACTCTAGCTCCTGGGTGTTTTCCACCTACACGTCGTCCCCTCGGTTATGCAAGGTATTAATCATTTATTGTCTCTCTGTAAATAAAATGGATGACAtatgtttttttatataaatatatataaatatatatattggaaTTATTTATGGAGAATATTATAATATCATTGCTGTATGAAACCCAATGCCCTGTATTCGGTGGTGACTGTTCTATTTGTGTGTTGGACCTCTGTGTGTCTTATATGCTGTCAGTGTCTGGAGTTATATGAAGGACTCACTAAGCAGGGGCCTGTTACTCTATGTGATACTACTACTATGATTCTCAGCCACAGGTTCTTGGGTCCAGACCTAAACGGTTCAGTTACCTTTCCTGCCTTTTATCCctactttccttctctcttttcaTATCTCCTATCCTCCTTTCCCATCTccttttctcctttcctcctgCTCTTTCCTATCTCCACTTGTTTCCTTCCTCTATTTGACACTGATGTAGCTACCATGAGTAGAGTAGGTGATCCTGTAGATATGAGAGGATACAGGATGAGCTGTGTGTGTAAATGAAAGCAATAGGCTCCAATATTTGAGACTTAAGGGAAACAGCATGTTACGAAAGCCAAACCCTAGACTAACCTCCATGGATGGATGGTGTTGTTTTTCTCTACTTcgtttcaaatcaaacagtaaaTTGCTGCTAGGCATCAGCCAAACGAAATCCTCACAAACAGGACACCTGACAGAGACAGTGATGATGCCATATATGGACTTTTCCCCTGCCGCCCCTTTCCTGTCCAGTTGCCATGGGGATGTGAAAGTGGCCAATGATGCTGCCCGAGCACTAGCACGTGTTGTGTGTAtgacctcctctcctccaatgagagagctctgtcagtgaaCTAGTGAAGTGTTGGATGGGtgtatttcttttgattttacagCCAATGTTTTAAAGGTGTCTAAAAGATGTAATGTGTTACTGTGGCAGCTAcgagtactgtgtgtgtatttattccAGGTGTGAAATGATGCTGACAAATCAAGATTTTATTATTTGGCTATTTAAAAAGTGTATTGTATTTATGACACTATAGACATAAGTAAAGCTGTTTTTTGTAAAGATA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU712443 lncRNA upstream 33691 56612469 ~ 56637545 (+) True G626531
TU712365 lncRNA upstream 145513 56525382 ~ 56525723 (+) True G626468
TU712295 lncRNA upstream 245262 56425734 ~ 56425974 (+) True G626400
TU712208 lncRNA upstream 301727 56342181 ~ 56369509 (+) True G626323
TU712181 lncRNA upstream 347295 56323740 ~ 56323941 (+) True G626310
TU712506 lncRNA downstream 11587 56728400 ~ 56728632 (+) True G626594
TU712521 lncRNA downstream 21148 56737961 ~ 56740360 (+) True G626598
TU712522 lncRNA downstream 32326 56749139 ~ 56750289 (+) True G626599
TU712527 lncRNA downstream 34214 56751027 ~ 56766586 (+) False LOC110528029
TU712525 lncRNA downstream 37955 56754768 ~ 56766586 (+) True LOC110528029
XM_036984489.1 mRNA upstream 295174 56375199 ~ 56376062 (+) True mdfi
XM_036983563.1 mRNA upstream 375377 56133962 ~ 56295859 (+) False foxp4
XR_002474181.2 mRNA downstream 33991 56750804 ~ 56759223 (+) False LOC110528029
XR_005052614.1 mRNA downstream 100468 56817281 ~ 56842143 (+) False LOC110528032
XM_036983591.1 mRNA downstream 100469 56817282 ~ 56842143 (+) False LOC110528032
XM_036984435.1 mRNA downstream 131693 56848506 ~ 56849449 (+) True LOC110528976
XM_036983597.1 mRNA downstream 301732 57018545 ~ 57029242 (+) False LOC110528036
TU712312 other upstream 185932 56482394 ~ 56485304 (+) True G626417
TU711835 other upstream 592307 56071054 ~ 56078929 (+) True G626004
TU710986 other upstream 956525 55711673 ~ 55714711 (+) True LOC110528024
TU710967 other upstream 1198393 55472468 ~ 55472843 (+) True G625222
TU710771 other upstream 1457325 55211705 ~ 55213911 (+) True G625038
TU712869 other downstream 602889 57319702 ~ 57323021 (+) True snrpe
TU712997 other downstream 826069 57542882 ~ 57585844 (+) False G627035
TU712995 other downstream 862237 57579050 ~ 57596051 (+) False G627035
TU712996 other downstream 862237 57579050 ~ 57596051 (+) False G627035
TU712999 other downstream 862237 57579050 ~ 57596051 (+) True G627035

Expression Profile


XM_036983588.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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XM_036983588.1 Expression in each Bioproject

Bar chart with 14 bars.
XM_036983588.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
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