RNA id: XM_036983590.1


Basic Information

Item Value
RNA id XM_036983590.1
length 4692
RNA type mRNA
GC content 0.46
exon number 20
gene id sort1a
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 56772815 ~ 56796604 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCCACAGTTCACTTCTGCACCAGATGAACATTATGTATGCCGCCTACGTGGGGTGGTCTAAATACAGTTGGTGATAATAGAAACGGGTTACTAAATTGATTTTTAGCAACACAACTCAGACTTGCGAATATGACTCCGCTGTATAGCATTGCTGTTGTCTGGTTATTTACCTATGCGCTATGCGAGGATTTTTGTAAAAATGCCAACTACTTCGGCGGGGCACACACAACGTTCGTGAATACCCCGCGACCGAGAGATTCGCCGGTGTTGTCTGGACACAACCTTAACAAACGGAGCACTGACCCCGACGGAGAGACGTGCAAATCTCTAACGGGATTCGAGTCCACGCtgaaaaataacacacacaccTATGCCTTCAATGACCTGAGTGGCTCAGTGTCTCTGGCCTGGGTGGGAGATGGCACAgggGTGCTTCTGGTGCTGACCACATTCCAGGTGCCCGTCTTCATGATTCGCCTTGGCCAGTCTAAACTCTACCGCAGcgaGGACTATGGAAAGACATTCCAGGACGTGACCCACCTGATCAACAACACCTTTGTTCAGACTGAGTTTGGCATCGCCATTGGTCCTGACAACTCTGGCAGGgtGATCATGACAGGTGATGTGTCAGAGGGAGGGGGATCCCGGATTTTCCGCTCGTTGGATTATGGACATAGTTTTTCCCCAGCGGACCTCCCCTTCTTTCCTCTGATTCAGACACTGTATAACCCCAACGACAATAACGTGCTACTGACCCTCAGCATCACGttgGACCTGTGGCTGTCTGAAGACTTTGGCTCCACCTGGAGGAAGATCCATGACAGCGTGTGTCTGGTCAGATGGGGTCCCGAGGACAGCATCTACTTCACCACAAACTCTAACGGATCCTGCAaTGATAAGGGCATGTTGGAGCTGAAGAGGTCTCTAGACTATGGCAAGAACATCAAGACCATCGCCAGCAAGATCTACTCCTTTGTACTTGGAGGACGCTTTGTCTTCGCCTCCATCATGactggctcgggTACCCAGCGTATGATCCATGTGTCGATAGATGGTGGTGATGTGTGGAACATGGCTCAGCTCCCTACTGTTGGCCATGAGCAGTTCTACTCCATATTGGCAGCCAGCGACGACATGGTGTTCATGCACGTAGACGAACCTGGAGACACTGGCATAGGGACCATCTACATATCAGATGACAGAGGGACACTCTACTCCAAGTCTCTGGAGCGCCACCTCTACACGGCCACAGGGGGCGACACTGATTTCACCAACGTCACCTCGCTCAGGGGTGTCTACATGACCAGCGTACTCACAGAGGACGGCTCAGTGGAGACTGTGGTGTCGTTTGACCAGGGGGGGGAGTGGCGGCCGGTACAACGGCCTCGAAACAGCCGCTGTGACACTGAGACCGCCACCAACCGGCCGGACcgaTGCAGCCTGCACATCCACGCCTTATACAGCATCTCTATGAAGATGAACGTCCCTCTACTGCCCCTCACACAGTTCAACGCTATAGGCCTCATTCTGGCtcatggtagTGTGGGTGACCCAGTGTCTGTGCTGTCTCCTGATGTGTATGTGTCTGATGATGGAGGCTACTCCTGGCTGAGAGCGCTAACCGGACCCCACCACTACGCCATCCTAGACTCTGGAGGCCTTTTGGTGGCTGTCGAACACACATCTGCACCCGTCAACCAGATcaaGTTTTCCACAGACGAGGGCCAGTGTTGGCATGTGTATAACTTCACCAGTGAGCCGCTGTATTTCACAGGGCTGGCGTTGGAGCCTGGAGCCCACTCCATGAACCTCAGCCTGTGGGGGTACAGAGTGGGCCTGCAGGGTCCCCTCAGTCACTACTGGGTCTCTGTTACCATCGACTTCAAACAGCTACTCTCCAGAGACTGTGGGGAGGGGGACTATGTTCAGTGGTTGGCGCACTCTGATGACCTCAACAACCCCAATGACGGATGCATTCTGGGATATAAGGAGCGTTTCCTGCGGCTGAGGAAAGATTCTGTCTGCTGGAACGGACGTGATTATGTCATCACCACCCAGCCCACCCCCTGCCAATGCACACTGGATGACTACCAGTGTGACTATGGGTACCACCGTGCAGAGAACAGTTCTGAGTGTGTGGAGCAGGCAGACCTGAAGGGCCATGTTCTGGAGTTCTGTCTTCACGGCACCACAGAACAGCTGCAGACCAGTGGCTACCGGAAGATTCCAGGCGACCGGTGTGTGGGCGGGATCCAGCCTAAGAGGAAGGAGATTGATCTGAGGAGAAACTGCATCAGCAATGCACTTCACCCAAAACCTCTGacggaGGCCAACTTGTTAAGCTCTGCCTCTATAGTACTGGTTGTAATGGTGATTTTGCTCATCAGCGCTGCCACAGGGGTTATGCTCGTCAAGAAATATGTCTGCGGAGGGAGGTTCCTGGTACACAGGTACTCAGTGCTACAACAGCATGCGGAGGCCAatgggatagagggagtggatgaactggacacacacaccaccGAGATGGGCAAAACACACTACCACGAAGACTCAGATGAGGACCTCTTGGAGTGAGAAGCGAGCTGCGAGAGACTTAATCCGCCAACCTGACAGCCTACCCAAGACTACTCCCTCTCACCATTGCCTCCTCCTGCCGCCACTAATACTGCAGCTGCTCTGAGACTCCACTCCTACTCAATGACTGCAAACAGTTCCTACATACCTCTTCCCTTCCCAAGGACACTGGCACTAAAGGGATATATCATGTCCTGCAGAGGGCTGGAGAGCAGTGGGACAGGGGCTGTGGGCTTGGGGCCTGTGGAGGGGAGCGCAGAGGAGAGCTTTTGTGTCCCTAAGGAGCTTTTGTTGTGTCTGCAGCCTTCCTTTCTCCACAACGCTTTCTGATGCAGATTCACGGATCAGGCGCTCTATTGCTGTGGTGCAGAGAGTCAGGGTGCAACAGCAGTGGCACTGGGAATGGTGTGTCTGGATCAGAATGAGTTTCTATGGTACAGTACCTGATATGGTACACCCCTACGAAAGAGACGGTATACAAAATGAGATGTGGAAAGCTTTCAACTGAAGTGGTACATAGTTATACATTTAGTTATGTCTGAAATATGTTTTTACCAAGTGCAAAAGATaatcatttgtgtgtgtgaggtgaaaACGTATACTAAATGTGTTATCGTTTTCAGGCTCATACCAGCTTTAGTATGACCACATTAACAAAAACTAGCTAACCATACAGTACCTTGTCCTACTGTGCTTAGAGTGGACATCTTGAATTATATTACCAAAGCACTTTCATAATTTTGTGTTGCAGAGAAAATGTATCTGATTTGTCATACTGAGAGGGTAGGGAATATGGGGGAAACTACTCAGCAAATGAGTTGTCAAGTCTGAACAGACCATATTGTACTAGTGAATTACTCTTTCCTTTTTTAACCTCTGCCATGAGGCCTACTTAACAATGTCATAACACATGTCATAAACAGTCATGACAGCTGAAATGAACTTAATTTACACAATCTTTACACACACTGCTATTGAAGTGAACTAGTAGGATAGCAGTTTACCCAGCTAAATCTAAAAAAGATCAAATATATTTGTGGGTCTGGTATAGTCTGCTTGTAAACTATTTATAAACGGTAGTTTGTTAACCATTACATTTAGAAAATACATGTGTAAGGCTTATTGTTCATGGTGTATATATGATTAAAGGGTCTGATAATAGATGGTTCATAAATAATATACATGTAATTATTAATGAACTCAAATATATTAACCAATGATATGTAATGTTAGCAAATAGTTTACTTATGGTAACAAACTTTTGAATACTGGTATAAAAGCAGATCCTGTCAACCTGTTACTAAGTTATATGTGAATCAttgctgtttttttattttttattacgaTGAAGGCTATGATTTAATCTAAATCTTGTTTTAACAAAAGAAGCGCTATGTTCAAAGTTTGTGTTTGTGGGAATTATTTGATTTTACAATTTGGCAAGTGGACACATGTGAAATTAATTGTCCTAACATTTTCTTGTCACTATATTTTATTACCTCAGAATTTCATAAGCTAACATATCTAAGAAATAAAACTAGTTTGAGTATTCACTTGTGCTTTATTCAGGTAAGCAGTATTCACAACATAGAGCGGCAGAAATAATCATGGGCCTTCAGTCCCAAGCATTTCATTAGACAATGTTACCTAGTTTCCTTTATAGATTTGAGAAGCACAATATCAACATTTTTGGAGTTAATGCATGTCTACTGTGTAATGAAGTGATTCCATCTCCAAGTGGACCCAATTGAGGGTTAGGAGACTTCCTGACCAGGAAACACTCTGGGCTCTTGCAACTGGTACGTGCTTTTTGCAGTTGCAGGCACTCATTTTCTTTTCACACCATCAGGATTGATTAACCAGCTATTATAAATGGCAGCTCATGCTGAGTTTTGGTGCAGTGCTATACTGTGAGATAGCTGTATAATGGACATTATGTTTTGTCTCAGATTTCCATCTTTCTGGGAATAGTCTGTTCCATTTTAGGCCTGGTGTATAGTAGTTTGTTTGCTTGTGTTTTTATATATCATTGACAATTTTACAAACAGACTTGGAAAGTCCTCTTTTGCAATATAGGTTGATCTCTTTGAATAAATAATAGTTTAAATGTTGAA

Function

GO: NA

KEGG:

id description
K12388 SORT1; sortilin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU713274 lncRNA downstream 22354 56748725 ~ 56750461 (-) True G627281
TU713108 lncRNA downstream 252895 56482373 ~ 56519920 (-) True tfeb
TU713155 lncRNA downstream 276183 56495308 ~ 56496632 (-) True G627175
TU713145 lncRNA downstream 280859 56491664 ~ 56491956 (-) True G627172
TU712297 lncRNA downstream 345856 56426750 ~ 56426959 (-) True G626402
TU713288 lncRNA upstream 17993 56814597 ~ 56814801 (-) True G627295
TU713295 lncRNA upstream 20698 56817302 ~ 56817561 (-) True G627300
TU713300 lncRNA upstream 26516 56823120 ~ 56823415 (-) True G627305
TU713301 lncRNA upstream 28121 56824725 ~ 56825042 (-) True G627306
TU713302 lncRNA upstream 29431 56826035 ~ 56826313 (-) True G627307
XM_021609807.2 mRNA downstream 389 56757066 ~ 56772426 (-) True mdm4
XM_021609808.2 mRNA downstream 390 56757066 ~ 56772425 (-) False mdm4
NM_001124727.1 mRNA downstream 52628 56716876 ~ 56720187 (-) True myog
XM_021609806.2 mRNA downstream 168221 56599243 ~ 56604594 (-) True tmem183a
XM_036983572.1 mRNA downstream 179804 56482373 ~ 56593011 (-) False tfeb
XM_021609811.2 mRNA upstream 244 56796848 ~ 56806013 (-) True psma5
XM_021609813.2 mRNA upstream 57207 56853811 ~ 56869607 (-) False vamp3
XM_036983592.1 mRNA upstream 84727 56881331 ~ 57017276 (-) False LOC110528035
XM_036983593.1 mRNA upstream 84727 56881331 ~ 57017276 (-) False LOC110528035
XM_036983594.1 mRNA upstream 84727 56881331 ~ 57017276 (-) False LOC110528035
TU713244 other downstream 76724 56691323 ~ 56696091 (-) True G627254
TU711411 other downstream 1338743 55433456 ~ 55434072 (-) True LOC110528020
TU711245 other downstream 1600615 55164492 ~ 55172200 (-) False G625472
TU711185 other downstream 1697419 55072479 ~ 55075396 (-) True G625426
TU708601 other downstream 3449984 53305536 ~ 53322831 (-) True G622985
TU713310 other upstream 37981 56834585 ~ 56835092 (-) True G627314
TU713320 other upstream 50358 56846962 ~ 56852301 (-) True G627323
TU713292 other upstream 56963 56853567 ~ 56869375 (-) False vamp3
TU713290 other upstream 57213 56853817 ~ 56869375 (-) False vamp3
TU713291 other upstream 57213 56853817 ~ 56869451 (-) True vamp3

Expression Profile