RNA id: XM_021609813.2


Basic Information

Item Value
RNA id XM_021609813.2
length 2149
RNA type mRNA
GC content 0.42
exon number 5
gene id vamp3
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 56853567 ~ 56869607 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcatccttattgtggctagcttcacacaaATTCCCGAGGGAGGGGTAGCCTTTTCTTGAAACACTCTGGAAATGTGTATTTCAAATTCAGATGAATTTTTTCAGAtgcttgttttgttagtttaaaaTTGTCCAATTGCTATTCATTGATATTTTGGGGAATGACGCAATGAATTTGAGGTGCGCCATTTATTATACATACTGTCACTTTAAATGACACAGAAGAAGTAAACTGGTACAGATTGACACCGCCTCATACTAGCTACACGTTCAAGATTTCCGGTGCTTTCGATCTCTggctgctagctagctatccaATAAAAACATGTCGGCTCCTGCTACAGAAGGCTCCGCACCAGGCAACCGCCGCCTACAACAGACACAGGCCCAAGTGGATGAGgtggtgGATATCATGCGTGTGAATGTGGACAAGGTGTTGGAGCGTGACTCGAAGCTGTCGGAGCTGGACGACAGGGCGGACGCATTGCAGGCCGGAGCCTCCCAGTTTGAGACCAGCGCTGCCAAACTCAAAAGGAAGTTCTGGTGGAAGAACTGCAAGATGTGGGCCATCCTGATAGCTGTTATAGTCATCATCCtggtcatcatcatcaTCTGGAGCCAGTCATCGTAAAGAAGCAGTTGTTGGAGGCGGAAGAGGAATGGGCGAATGGTGGAGAGGAGCGAGTAAAGAGCTGAACGTCTCAAACACGAGGTCTCGTGGTTTAGCCTACCCATTCTCCACAGCAGTGTTCTTTCTTCCTGGTCCTGGAGGGCCTATCCAGTCAGATTTAGAATACATTGCATATAGAAATGTATTGCATAGAACTGATACCATTCTTCATTCCATGATAGAAAGTCAACCCTCTGAATGTACCTGCTGATGGTTGAACTACATATAAAGGTCAAAACAGGCTGCGGCCCTCCAGCACCAGGAGTGAAGCACACTGCATTCAATTTCTCAAGTTATATTTGTGTTTGTTAATAATAATAGATTTGATTGTGTGTGACAGAGACAAGGCCCTGCGTGATTTGCTCTGTGCTTTCCTGTTAGTCTCTACTGTAATATTGACCTGATGTGCCATGGAGTCACCCTCCACccccttaaacacacacacacagtcatcagATCAGAACACCAAATGACTAATTGACATCAACTTTTGGATTATTATATCCACAGAAACAACTGGGCATGGCTGAGATTTAATCTCAACCTTGTTCTGTCTCtaacaggactgtgtgtgtgtgactctaaATATGTGGGCTTGAGTTCAGAGAAACTGCCAAGATTGGCACACAAGCCTTGTTTCTTTTCTGTTAGTCTGCTTGCCCAAAGTGACTGACAATGATACTGCCAATGCCATCAGTGCCACACTGGTCATATAAAAGTAGTGCCTTAAGTAGTGATTCATGTCAAAGCACCAAACAATAGATATCAGGCAAAGAATGGGGATAACATTTAACTTAAGAAAAACAGCCAAAAGACAGCCAAGCCTTATCAAACCAACATACGGAACCAGCAGTGCTTTCCAATGGTCTGCATATtcatgcccacacacacatataggcaCTAATGGTCTTCTCTGCAGGCTCCTGCTATCCTTTATATTATCCTAATAACTACAACCTTTCAATTGTTTTATTAATTTAATGCCAATAAATGTTTTTGTTCCTTAAATATATTTGCTGTGTAGTGTTACTAATCTTAAGAGAAACGGTGTAGATTATTTTTCTTTGCATACTGAAATGCCTTTAGTTGCCATGGTTACTTTGTTGCTGCAGTGAAGAGCATCATGGGATGTTTGGGAAGGAGGAACTGTGTGGAGCATGTTCAGTATGTGTCACCACCTTTTTATAGGGTGCCAAAACCAAGGGCCTATTTTCTGGGGTGCAACTATACGGATCCTTCAGACCGATGTGTATTGCATAGAATCAACGTCACGGTCTTGAGTGAATTTTGTTCAATTCATTACATTTCTGAAGTGCTCTAAAGATGTTACATCTTACTAAATAAACTCCAGCCCTGCCAAATAAGCCTTCCCCAAGTCTACCCCTCCCTGTATAAATATTAGAAACAAGTGCAATTCTACTCTGTGGCTTTACAATGTTGTCTTGCTTGAATAAAAACAGATGTAACTTTTATCACACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU713313 lncRNA downstream 11682 56840579 ~ 56842129 (-) True G627316
TU713309 lncRNA downstream 18719 56834350 ~ 56835092 (-) False G627314
TU713308 lncRNA downstream 19519 56833973 ~ 56834292 (-) True G627313
TU713306 lncRNA downstream 22707 56830524 ~ 56831104 (-) True G627311
TU713305 lncRNA downstream 23378 56830063 ~ 56830433 (-) True G627310
TU713339 lncRNA upstream 26644 56896251 ~ 56896997 (-) True G627342
TU713340 lncRNA upstream 28485 56898092 ~ 56898535 (-) True G627343
TU713343 lncRNA upstream 34793 56904400 ~ 56904778 (-) True G627346
TU713409 lncRNA upstream 114737 56984344 ~ 56987712 (-) True G627408
TU713434 lncRNA upstream 152282 57021889 ~ 57022773 (-) True G627432
XM_021609811.2 mRNA downstream 47798 56796848 ~ 56806013 (-) True psma5
XM_036983590.1 mRNA downstream 57207 56772815 ~ 56796604 (-) True sort1a
XM_021609810.2 mRNA downstream 57527 56772815 ~ 56796284 (-) False sort1a
XM_021609807.2 mRNA downstream 81385 56757066 ~ 56772426 (-) True mdm4
XM_021609808.2 mRNA downstream 81386 56757066 ~ 56772425 (-) False mdm4
XM_036983592.1 mRNA upstream 11724 56881331 ~ 57017276 (-) False LOC110528035
XM_036983593.1 mRNA upstream 11724 56881331 ~ 57017276 (-) False LOC110528035
XM_036983594.1 mRNA upstream 11724 56881331 ~ 57017276 (-) False LOC110528035
XM_036983595.1 mRNA upstream 11724 56881331 ~ 57017276 (-) False LOC110528035
XM_036983596.1 mRNA upstream 11724 56881331 ~ 57017276 (-) True LOC110528035
TU713320 other downstream 1510 56846962 ~ 56852301 (-) True G627323
TU713310 other downstream 18719 56834585 ~ 56835092 (-) True G627314
TU713244 other downstream 157720 56691323 ~ 56696091 (-) True G627254
TU711411 other downstream 1419739 55433456 ~ 55434072 (-) True LOC110528020
TU711245 other downstream 1681611 55164492 ~ 55172200 (-) False G625472
TU713380 other upstream 182584 57052191 ~ 57058570 (-) False LOC110528040
TU714707 other upstream 1002443 57872050 ~ 57873331 (-) True G628575
TU714864 other upstream 1247583 58117190 ~ 58118122 (-) True G628714
TU715047 other upstream 1556568 58426175 ~ 58429371 (-) False LOC110528069
TU715184 other upstream 1822210 58691817 ~ 58694489 (-) False LOC110528083

Expression Profile