RNA id: XM_036983595.1


Basic Information

Item Value
RNA id XM_036983595.1
length 9551
RNA type mRNA
GC content 0.49
exon number 22
gene id LOC110528035
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 56881331 ~ 57017276 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGtcgcgaggaggaggaggaggaggagggatgaggcgCGCGGAGGGGAAATGGCTGCCGAAAACAAGCCGGAAGggttgAAAAGGATAAGGAATCCAGAGCGGATGATTAGAATTGCCGTGGGATACACAGGACATGCCCCTCCCAAGAGTGATGACACAGACACCAACGgtgAGCCTGGCCAGTTGAAGATCTACCTACCTAAGAAGCTGTTGGAGTGTTTGCCCAAATGTTCCTCTCTGCCCAAGGAGCGCCACCGCTGGAACACCAATGAGgagATTGCAGCGTATCTGATCACATTTGAGAAACATGAAGAATGGCTGACAACATCACCCAAGaccagaCCTCAGAATGGCTCGATGATCCTGTACAACAGGAAGAAGGTAAAGTACAGGAAGGATGGCTACTGCTGGAAGAAGAGGAAAGATGGGAAGACCACCAGAGAAGACCACATGAAGCTCAAAGTACAGGGAGTGGAGtgtctgtaTGGCTGTTATGTCCACTCCTCCATCATCCCTACCTTTCATCGCAGATGCTATTGGCTGCTCCAGAACCCAGACATAGTGTTGGTACACTACCTGAACGTTCCAGCGGTGGACGACAGTGGGAAGCCGTGTGGGCCTGTCCTCTGCTCCATCAACACAGACAGGAAGGAGTGGGCCAAGTGGAGCAAGGAGGAGCTCATTGGACAGCTCAAACCCATGTgTGCCGGGAGTAGCCTGCACCAGAAATGCTCCACAGCCAAACACCGCATTATCTCCCCCAAATTAGAAGCAAAGACAGGGACAGGGGATGggactgggacagggacagggacagggtctgggacagggacagggtctgGGACAGAGGTGCAGAACAGTGATGTGTCTGAGGGGCAGACAGAGCCCAGTCCTGGAGTGGGGGCCAGGagcagaggagggggggagaggaagaaTGGAAGGCTGCCCAAACCCTCCCTGCTTCCCCAGAGCAGCATGGAAGTCTCCTCCACATCCACCAATCAGGTGGAGGTTCCCGACACCACACAGAGCTCCCCACTGTCAATCACCAGCGACATTACTGCAGACAGTCCTGCCCTCGGCCTGGCCAGCAGCCTATCACAGAGCTCTGCTGCTGTGTTCATGTCCGAGGTTGCCACGGTAACAGGGGATTCCGTGTACACCACAGAACACGCCCACCTGATTGGCTCCACCCATGACGCCACCACCACTGGGATTCTACTGGCTGTTGCCCCAGACACCCAGCGCTTTGAGTTCCCTGGGGGGGTGGGGTTAGCAGAGGAAGGGGGGGAGTTGGTCCTCTCCAGCAGTCTGGATGCCGGAGGTTCTGGAGTCAACCTTCTTGAGACCAGCATGAACTTTGACCCAGACTGCTTCCTCAACAACCCCAAGCAGGGCCAAACCTACGGGGGAGGAGGGGGTAAGGCCGAGGAAGGTAGCTGTAATAGTGAGGGGGGGCTCCGCTGCTCTCCACAGTCACTAACGGCTAACGGCTATGTATTCAACGCCACGCTCGTAAACATCAAGACCGAAGATACTCCCCTGGAGCAGCCGCTGGATAATCAGAGCGGGTACGCTGGCGAGGGGACGGGCCTGAGCCCTAGCACCACACTGGAGCAAATGGACTTCAGTGCTGTGATGTCATCAGCCTGCGCCCAGAGCTTGGCACAGCAGATACACCAACACTCCCCCAGTCTCTTCTTGCAGGCCTCCCCTAAGACCCCCCTCGCCCAGGCCACCCagccccagatctgtgcctctgaGACGGGCCAGAACTCAGGCGAGACTCAGGCTTATCTGGGCCTATCTACTATACCACAGACTGACTCTACAGGCACCAATGGAGACCCTCACACATACCTCCACCAACCCTCACCACACCAACATGGCCACAGTGAGGAAAGCAGCCAGGGGGGTCTAGTGGGGCTGGGTAGCTTTCCTGTAAGGGGGCAGGAGATGAGAAAAGACCAGCTGAGCACCAGAGGACCTGGGAAGGTGACGTCcccagagaaagagacacagaagaGGGCAGAGTTACTCCTCAATCCTGGGGAACAGCATGAGGCCTACAGAAACAACACTGGTGTTGGGAGAGGTGGAGATCACTACCTACAGCCAACAACCAAGAGtgggggagtagagggaggacaAGAAATAGGAGAGAAATATATTTTCAGTAACGGGGTCAGGGATGCAGGAGTTAACAGTGCAGTGGTGGACAGTCCTCAGTCTCTAGCTGGAGCAGCCATGGAGGGGGGGTTGTACAGCTCTACTCTTCCCCAGCCGGGTGTAGGTGAAGCTGGGGGAGCTGAGGGGGCAGGCGGGGGCATCAGCCTGGAAGGCTTTGAGGCATCGTTTGGGAACCAGTTCTCTGACCTCATCAATGACTTCATCTCTGttgaggggggtggagggggggcgGTGGCCGGGACAGGAGGCAGTGCACTCTACACCCCTGCTCTGATGCCCCAGGAGGAGGTTGGAGAAGGCCAGGAGGCAGGAGCAGCCCCCATTCAGGGTTCAGAGGTGGAGCAGGGACCTCTAAGATTGCTGCCAGAGACGGGGAGGCTTTTTGGGGTGACAGACTACTCCCCCGAGTGGTCTTACCCAGAGGGTGGGGTGAAGGTGTTGATAACAGGTCCCTGGCTGGAGGCCAGCAGGGAGTACAGCTGTCTGTTTGACCACATCAGTGTCCCAGCTGCTCTCATACAGCCAGGAGTACTGCGCTGCTACTGCCCTgccCATGAAACAGGTTTGGTGATGCTGCAGGTGGCTATGGGTGGGGATGTGATCTCTTCCTCTGTGGTGTTTGAGTATAAAGCTCGAGACTTGCCCGCCCTGCCCTCCTCACAACACGACTGGTTGTCCCTGGACGATACCCAGTTCAGGATGTCCATTCTGGAGCGTCTGGAGCAGATGGAACAGAGGATGGCTGAGATAACCAATCACCATCAGAGCTCCGAAACCACGGCAGCCacggggggaggtggaggagcagGTGGCACTGACCACCAGTCCCAGctctccccAGCCGAGGGTTCATTTGAGGGccgtgtggtggtggtgtgtgagaAGATGATGACCCGTCCCTGTTGGGTTACCTCCAATCAGCTGATCCACAGCCGGAGTTCCCGGGGCATGACCCTGCTGCACTTGGCCGCAGCTCAGGGATACGCAGGGTTAATACAGACTCTCATCCGCTGGCGCACTAAGCATGCAGACAGCATAGATCTGGAATTAGAGGTGGACCCGCTCAATGTCGACCACTTCTCCTGCACCCCACTGATGTGGGCCTGTGCTCTGGGTCATACAGAAGCAGCGCTGGTTCTGTACCAGTGGGACCCCAGAGCTTTGGCCATCCCTGATTCGCTGGGCCGCCTGCCACTCAGTATTGCACGCTCACGGGGACACACTCGCTTGGCCGAGCTACTGGAGCAGCTGCAACAGACTCCTCCTACTCAGAGTCCACCCAATGACACCTGGATGGACAGGTGGAGCAGCGAATCAGAGCCCAGTGGACATAGGGAAAGCCCCGCCCCCAGCTCTAACCCAGACCTAAGGAGAACCAGGACAGAACCACAGCAGAGCACCCAGAACCACAGCCAGAGTCAGAGCTGGGCTCACCAGGGCCAACCCCAGTTGCAGGGCCAACACCGGGGGCCACCAGACAACCAGGGAGACCTACCACCAGCCAAGAGACTCAAACTCAACCCTGATGCCCAGCAACAGCCAGTCAACCCCCCACGCTCTCAACTACCCAACCTCAGCCCCCTAAACACTCACCCCCCCAGACCCAGCTCTAACACCCCAAATCCCCACTTCCCCAGCCCACCTCTGCAGACCAGGTTAGGGGGGTCAGGGGGTGGCAGTAGGTATAGCTTGCGGCAGGCTCTTGGGAGGCGGAGTTTGGCCAGGAGGATTCTGGGAAAGGAGAGACTGGCCAATCATCTGCGTCAGAGGGGCGTATCCACCAGGGGGGAGGAGCCAGAACTGCTGACCTATCAGGAGAACAGTGAAGACCTGCAGatgAACATGATGATGCTGGCAGAACACATCATGGAGGCCACTCCTGACAGGATCAAACAGGAGGGCTTTGTTGCCACGGAGACTGAGACGTCGCCACCGGAGACCGTTGGGGTCAGCGGTGATGTCAGCTGGTTGGCTAGTTACATTGGTGACGTGGAGCGGTTTCTATACTCCAGGCCCCAGATGCCCACCCCAAGCCCCATACCAAGCCCCCTGTCTGGGCCTGAGGATGAGGAAAGTCCCCTGGCTCCGCAAGGCCTGCCCTCCCCAGCCGACTGGAGCTCCTTCCTGCATGCATCACTCAGTGGAGAGGGCCCAGACACCAACCCTGCCCACCTCACACTGACAGAGGCGGAGCAAAGAGAACTGTACGAGGCTGCAAGACACGCCCACCACACCCTCAGAAAGTACAAGGGCCGGCCAATCCAGGAGCAACGTAAAGAAACAGTAGCAGTGGTCCAGCGCTGCTATAAGAAATACAAACAGcTGTCATGGATAGCCTTGAAGTATGCACTTTATAAGAGGATGACGCTGGCAGCCATTTTGATCCAGAGCCGCTTCCGCAGTTTCCACGAACAGAGGAAGTTCCAGCAGAGCCGGCGAGCAGCAGTACTGATCCAGCAATACTACCGCAGCTACAGACACTCTCTCAGCCTCTTGATGGACCATAGACCAGTCAAGCGGGGCAAGAGAGCAGAGAAAGGCCAGGGGTCCTGAGAGCCCACGACCCAGTCCAACACAGAGCCCCCTCATCCTGTGagctcctctccactcttctcttccctctcctcctgtcccttcCTCCCTCGGTCTCACACAGGGGCaattctcttttcctccctctcctcatacCAATCTCACAATGGGACTACTTCACAGTCCACACTCCTCTTCTACAAACAGACTGCTAACACTCAAACAGGAGAATGAGGAGGGATACATGGCAACTATATCACtgagacaacacagagacaactctcctctctctcctccctctgtttctctgagACAAACGCTTCCCAAACAGACAGGTACACTGCTCTGGGAGACTGCTCTGATGAACATATGGCCCTGGCTCTGGCCACAGCCTCGCTTTACTTTCCTCTTCCTCCAGATCACAGAGAAGAAACTACATTACCCTTCCTGGCATCTTTGCACTCTTCACAGATAGATCAATGTTTTCTTCAAGAGCAGAAAAGAACAAGAGAAAAAGATCAGGATGCAGCTGAAGATGCACATTTTTTATCGAACGCGTTCGATACGGAGAATGGGATGATTGGTTTTCTCATATGGGCAACATTTGCATTGACATGCATAATCTATATTGGACCTGTTGTACTTGCTGTATATATGATACATTTTAGGAAAGGAAAACATAAACCAAATATCACTCCCATATCCTGTATGCATGCACTGTTTTTCACTAGCTCTTCTCCCATGGCTTTTATGGCAGTTGGCAAAGTCAATGTGATCACCACACTCTGATTGGCTGGCTAGACAGGTCAACCAGTCACCCAGTCCCCCAAAGAGAAGTACTACACTTGAATGTAAGAAGAACATTAACAGATAGCGGTTTAGGTGTAAATAACAGTGTCTTAATTTGTTATATTGACTTGTCTATGAAGTCATTCTCTGAGGAAGCATTTTGCTAGCCTGATGTGTGAGTCTGTGTTTGTTGAATCTAATGCATGTGTTTGAGCTGTGAGCTCCTGCATGCGAACCAAActtgtttgttttgtatttatgtgTAGTGGTGTCTCACTTCTGTCCTCATTGACTAACTCTACCCTGTGTTTATCATGTGCTCTATGTAAGGAAAATAACCTGGGTTTTCTGcttttatttatctatttgttTCATTTTTCTTATTTACCTTGTTATTTTCTTTCATTTAATTTACAGTAAGAAAATGGCTTTTTAGCCCGAGTTAGTTTTATCCCCCTATTGTGTGGTAATGTGTGGTAATGTGTGGTAATGTGTGACATATTCGGTTCAGATGGTTATCTGTCTCTgtcaatttgttcttaacatgAACTTCAAAAAGCCACATATGGTTTTGAGGAGAGTGTCACATTGCATTGCCTTGACTTCTTATAGTCTGTGAGAAGTCCCTATACTTACTATACGCTAGCCCCTGTCTAGGACATGGGTCCCTATATTAGCCCTTATAGAGTTTAGCCCAGCCCATATTTTTGACTATATAGCGTCTCTGTACATAAAATGACGAGGTATGGGTATATATGGAGACCCCGGATCTTTTTCATGAGAAAAGACTGTATTTAAGAATATATATAATTTTACTTCTATAACAACAGTATGAGCAGATAGAGACCCGGGTATACAGGACAATTGTATTGTTTGTAAATAATGTAAATACTAACCATGGATCTATGTGCATGAGAAAATAAGACAAAGAAACGAGGCAAGAAAAtcaacatacatttttttgtggCTATGGACTGTAAGAGGATTTGAACTACTTCACTTTACAAGTGTTTGATAAAAGTGTTATTGAAGAACATTTTGCTAAAGCATGACGTTGATGACATCTTATGTTAAAACCAGTGATATAAAGAATAAGGGCAGAAAGCTAAATGTATACACAACATGCTTTTGATTTCAGGCTAGCAAAAATGAAATCATTTTGCTAGTGGTGCCAATTATTATGAATTCTACTTTTCCCTAGGACCCTAGGATTAGcgcaggagtttttcctgaccatgtgGTCACTtgttcaggaaaaactcctggtccAGGAGgtaaaacatacaagtattaaatatactgtacacagtCATCTCAAGCAACTGACGAGTGGGAAAGCAAGGAGAACTTCATAATCTATTATTTTAAAGTGTACACAGAATGAGTTCGTGTCAGGTGTCAAAACCAAACAAACTGGTGATGGGTGATGTTTCTGTtagtgtggtcctctgtggctcagTTAGTAAGAGCGTTGTGCGGGCAATGGCAAGGTTGTTGGTTAATTTCTTGCAGGGATCACACACATACTCAAAATGTATGCCCTCACTGTACTGAGTAagttacattggataaaagtgtctgctaagtgGTATATACTTTTATGTTAATGCAATTGCAGATTTGAAACTTTCATCTCTTAACTTCAGACAGATATTTTCCCCTTCAAATTCCCCAGTATGTAATTGCCAATAGTATGGCCTGTGTTACAATGAGGCGTTTCCTTCCCTAGAGTGTCTTACAGATTTGTTTTGACTGAGAATTATGACCAGTTTGGTTTAGAAAGTGCCTACTCATATACAGAACGTGCAAGCTAATATCAGGAACCCACTATATGTCTCCAAACGAGTTAACTCATTCCCTCTATAGTTTCCCAAACTGTGTGTGATGATTATTCTACACAAACGATTGGCACCCAGTCTTATTTTGAACTCTAATTGGTTAGTGATTTTGGTTGTTCTTCCTATACCTAAGTGTTTATGCATTCAAAATATTCCATTGTTAAAAGACAAGTTGGCTATAGCAGAAACAGACTGATACTAGTCCTGCTCTTGGTCCTCTAAGCAGATAATGTATTTTCCTCCTCCTACCAGGTAGAGACTGAGTAGTGGATCCCAGCATACATTACCATGGTTCATTTGGGttgctacattttttttttttttatccgtaGCTCTGATTTGCCCCCTACATATATTTATTTGTGAGAAGGAAACATTGACAACGTTTCAATCCTCATTGGGATCTCAGTTAGGTTGCCAGATTATGCCATATCTCTGACTGGGCTGGTTGATATATTATAGGCTAAATTTTGCATGGCGCATTCACACCCATTTTACAGTAATGGCAGTACATGTAGGCCTAGACACTCTCATATAGATACCCTGGGTTAAGTCTTTAGTGAGATGTAGAGCACAAGAAACCCTCTTTCTGGAATTCAACTGCTGTATGGTCATTCTCAAGATGCAAATATCTGTTTTGAACATTGATAAAGTGTATTCTTCTGCATGGAAATTGCATGACATTTCACTTTATTTATCATCTGTTCAGTCCTGGCAGTAATGTTCTTCCAACGTTCTTACATAAAAACATATCTTAGCTGGAGCAAACTTCACACTCACAGACAGAGACATGCACACGACTCACTCGGTCGTCTCACAATCTCCAATCTTGCACACacatcacactctctctcttttcttttttcttAGGGAGCAGTAACTCCCTCAGATTTAAACTCAGGGTTCTAGAATGGCTTGGGGGTGTGGAGTAGgccctgtgtgtgcatgtgtgcgcgcgtgtgtgtgtgtgtcaatcagCCAATTGTGATTAGGCTATACCTCTTTCATAAGATGACAGTGGCGATGACCCCACAGAGATGTGGCAGCCTGAGGTCTTGTTCACAGGGAGTTGGCCTGAGATGGGTGCCACACACATCATCCCATCTATAAAGGACTTCCACTTCCAAACACCTGAGacacaacatataacatatataataCAAACATTCAAATATATGTAGAGCCTCACAAAGAAGACAATAATATCCTCTCTAGGGCCCGGAGTGGTtttcctgaccaggaaaaactctgggcatAGTCATTATGGCCCAGGAATTATTCATGTTGGAAAGGCTCTCCAGCCTATCGCTGTTTCACTCTGTAGTCAACTCTTGAATGCGCTTAATCATTTTATACCCTGGCCTGGAACTGTGCCCTCCAACCACATCACAGCTACActaacagaaacacagagaggcgCTGCTGTTTAAAGGGGGTGAATTCACACTGGATAAGGCTttccactgaaacacacagagcaaTAAACAAACATATACATTTTCTAAATAATGATCTGTAAATTTAAGTAAGCGTAGAGATCAGTTTATAGAGAAAAACATAAGCTATGTCACAGGCAACTTTGACTTCCTCTTCTGGAAAGTGGGCCACAGTCAGTAGccgaacgttgcagatagaaatgctaTGAATATAGCTGACgtgattccttattctacatgtcagagaggcatgtttgttctacatgccatatttctatctgaacataACAAAACGCTGCGCCCTGCTGAACTCGCTCCTGGGCAAGCTGCACAGAGGTGACCTTTGACACACAGGTTAAAGGTCAAATAAGAGATAGATTTTGAAATACAGGCCATAGTTATAACGGGCTATGGGCTAACATCACACTGCATGTTTAAATAGTGCTAGCTagacttctccctctctttctcttttcctctctcatcCCTAGCTTTGTTCCCTCCTATTTTGTGTTCTTcatgccccttctctctctttctctctctctctttctacctctttccctcttttGTAAGTGATTTTTTTAATAATGTGCATGTATACGCATCAATAAATAGTTGAATATGTTTTTAAAAAGAACCTTCTGCTGCTGAGGCCATGCACAGTGTTTTGAATTGCCCTTATATGTGGAACATGTACTTTGAATGCTTTACATAATTTCTGCTGTAAAATGAAATCTGAGTAAAAAGAAAATTTGCACTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU713313 lncRNA downstream 39202 56840579 ~ 56842129 (-) True G627316
TU713309 lncRNA downstream 46239 56834350 ~ 56835092 (-) False G627314
TU713308 lncRNA downstream 47039 56833973 ~ 56834292 (-) True G627313
TU713306 lncRNA downstream 50227 56830524 ~ 56831104 (-) True G627311
TU713305 lncRNA downstream 50898 56830063 ~ 56830433 (-) True G627310
TU713434 lncRNA upstream 4613 57021889 ~ 57022773 (-) True G627432
TU713381 lncRNA upstream 15574 57032850 ~ 57034989 (-) True G627381
TU713383 lncRNA upstream 19527 57036803 ~ 57039929 (-) True phf13
TU713377 lncRNA upstream 37112 57054388 ~ 57058570 (-) True LOC110528040
TU713481 lncRNA upstream 99014 57116290 ~ 57117047 (-) True G627477
XM_021609813.2 mRNA downstream 11724 56853811 ~ 56869607 (-) False vamp3
XM_021609811.2 mRNA downstream 75318 56796848 ~ 56806013 (-) True psma5
XM_036983590.1 mRNA downstream 84727 56772815 ~ 56796604 (-) True sort1a
XM_021609810.2 mRNA downstream 85047 56772815 ~ 56796284 (-) False sort1a
XM_021609807.2 mRNA downstream 108905 56757066 ~ 56772426 (-) True mdm4
XM_021609819.2 mRNA upstream 21148 57038424 ~ 57043462 (-) False phf13
XM_021609820.2 mRNA upstream 21148 57038424 ~ 57046463 (-) False phf13
XM_021609822.2 mRNA upstream 39128 57056404 ~ 57058621 (-) False LOC110528040
XM_036983600.1 mRNA upstream 39128 57056404 ~ 57059527 (-) False LOC110528040
XM_021609823.2 mRNA upstream 250166 57267442 ~ 57305408 (-) False cdc42
TU713291 other downstream 11880 56853817 ~ 56869451 (-) True vamp3
TU713292 other downstream 11956 56853567 ~ 56869375 (-) False vamp3
TU713290 other downstream 11956 56853817 ~ 56869375 (-) False vamp3
TU713320 other downstream 29030 56846962 ~ 56852301 (-) True G627323
TU713310 other downstream 46239 56834585 ~ 56835092 (-) True G627314
TU713380 other upstream 34915 57052191 ~ 57058570 (-) False LOC110528040
TU714707 other upstream 854774 57872050 ~ 57873331 (-) True G628575
TU714864 other upstream 1099914 58117190 ~ 58118122 (-) True G628714
TU715047 other upstream 1408899 58426175 ~ 58429371 (-) False LOC110528069
TU715184 other upstream 1674541 58691817 ~ 58694489 (-) False LOC110528083

Expression Profile