RNA id: XM_021609820.2


Basic Information

Item Value
RNA id XM_021609820.2
length 2292
RNA type mRNA
GC content 0.52
exon number 5
gene id phf13
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 57036803 ~ 57046463 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacacaaactgtgcGAGAGAGAGGTTCAAACCTGGGCCCCGTGTCAGAAAGCAGGTTTAACAAACTCTGAGTTTAAACCTGAACTATGGGTTGACGAACTCTGAGCTGTCAAACTCTTGAGATTTCGGTTTCAAGACAGGTGACAACAGTTAGTTCAATCAACTCTGGGTAAAGTTAACCCTGAGTAAAGCACTTGCATGAGGAGATAAAACGCCCTCATCAATGGAACGCAGATAACATGATTCATCATGGCAACAGGAGAAAAAAAGGCTTCAACCTGTGAATGCGTTTGCAGAATGGCCAGGGGCACAGTCCACCATACAGGAGGCGGACGGTGGAGGACTTCAACAAGTTCTGCACATTTGTGTTGGCATATGCAGGCTATATCCCATATCCCCAGGAGGACTCTCCTCTGCGTAGTAGCTCCAGCCCCCCCAACAGTACAGGCAGTACAGCAGACAGTGATGGCTGGACCCCTGTCCCTCAACCCCCCTCTTGCCCCCCACGGCCCCCCATACCCCTGCAGGACAAGAACAGGAAACGACCCCATCCCACGGGAATCCACCCTGGGGCCTCACTATCCAGCCATGTTATGAAAAATCATGGCCATTTAGCGTCCTCCCTGCACCCAGATGACCAGAGGAAAGCCAACCaactgaagaagaggaggaaggaccGGGAGAGCCAGGCCGGCGAGCCGAGCTCTGCACATCAGGCCGACGCAATGAGCCCAGAGCCACAGTTCTCCCTGCCCCTGGGAGGACGACCAATCAAAGACGAGCCTGAGGATGACTTCTTCATCCCCCTCCACCCTTCGTCCCCTCACCCCCTGCCCAGCCCCTCTCACTTCAATAACTCCTCCCCCTGTAAGCAGGAGCACAATGAGGAGTGGGAGTGCTGGGCGGGACAGGGGCTGGTGGAGGGCATGGTGAAGGTGGAGAGTGTGGAGAGTTTTACTGGGAACAGGACGGTGATCCGACAGGGGAAACAGGTGGTGTTCCGAGATGAGGATGGCTCCGGAGAGGATGAGGACATCATGGTGGACTCCGatgATGACTCGTGGGACCTGGTGACGTGTTTCTGTATGAAGCCGTTTGCAGGCCGGGCCATGATTGAGTGTAACCAGTGTAACACGTGGATCCACCTGTCCTGTGCTAAGATCAGGAAGTCCCACGTTCCTGAGACTTATATGTGTCAGAGCTGCAGAGGCACACTGGGCCTGGCAGACACCCGCCGCTCATACCGCTCACGCATTGGCCCCCGCAGACACCTTCTTGACTGACCCCATTGCAAACCCCTTCACCCCTCTCACCTACATTTAGACCATGCCCCATACGGTTCTAACCCCAACCCGGTCCTGTAACGCATGCCCCAGGCCAGCCCTTTCGTTTTGTCCCTGACCCCAGTCCTACCCCATGCCCCAGGCCCTTTTCCTCACCCCTATTGTGTCGACTAAGCCTACTAGCCATCCCTCGCGTTCTTCAACACCCCCAAACTAAACCGATCCGAGTGCTATTTAAGATTTATTATACATTTGACGGTTTCTCTCTGCTTCCTTCCGGACTCTGTGTGCGTAAGTCAAtcactgaatgtctgtctgtagTAGTACAATAGTTGACCAGTAGGGTTGGACTCCGTAGTCTAGTCTGGCTGACCGGTTAGCTCCGACTGGATAGAGACTAGCGACGCATCTCGCATGAACAGTGGAAAGCTGTCTTCATTCTTAAACTGTCGGAGAGAATGGCCTATAGAGCTGCCACCCAACAGTGTGCATTTTGGGACGTTGGCCTTTTGCACTTATTTCATGCGTTAAAGGGGTGTGTTGACTTGCCAACCCCTTCTCCCCCAACCACCCTCTCAACTAGGTGGTTGGGGGAAGCCTTTGTCTAAAGCCTCAAGCAGAGGGTCTGTAGATAATGATGTCCagttctatactgaacaaaaatataaatgcaacatactGAGTAAGGAAatttgtcaattgaaataaatggattctatggatttcacatgacttggtcacacacacacttaacaaaaaaaaaggtagggtcgtggatcagaaaaccagttagtatttggtgtgaccaccatttgcctcatgcagcgcaacacatctcctttgcatatagttgatcaggctgtggaATGTTCTCCCACTCCTATTCAATGGCTgttcgaagttgctggatattggcaggaactggaacgctctgtcgatccagagcatcccaaatgggtgacatgtctggtgagttgtatttttttaacctatttaaataggcaagtcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU713381 lncRNA downstream 3435 57032850 ~ 57034989 (-) True G627381
TU713434 lncRNA downstream 15651 57021889 ~ 57022773 (-) True G627432
TU713409 lncRNA downstream 50712 56984344 ~ 56987712 (-) True G627408
TU713343 lncRNA downstream 133646 56904400 ~ 56904778 (-) True G627346
TU713340 lncRNA downstream 139889 56898092 ~ 56898535 (-) True G627343
TU713377 lncRNA upstream 7925 57054388 ~ 57058570 (-) True LOC110528040
TU713481 lncRNA upstream 69827 57116290 ~ 57117047 (-) True G627477
TU713519 lncRNA upstream 97931 57144394 ~ 57201631 (-) True G627505
TU713571 lncRNA upstream 191125 57237588 ~ 57237990 (-) True G627555
TU713580 lncRNA upstream 242988 57289451 ~ 57298281 (-) True G627563
XM_036983592.1 mRNA downstream 21148 56881331 ~ 57017276 (-) False LOC110528035
XM_021609822.2 mRNA upstream 9941 57056404 ~ 57058621 (-) False LOC110528040
XM_036983600.1 mRNA upstream 9941 57056404 ~ 57059527 (-) False LOC110528040
XM_021609823.2 mRNA upstream 220979 57267442 ~ 57305408 (-) False cdc42
XM_021609825.2 mRNA upstream 223923 57270386 ~ 57305408 (-) True cdc42
XM_021609827.2 mRNA upstream 359284 57405747 ~ 57441998 (-) False LOC110528043
TU713291 other downstream 168973 56853817 ~ 56869451 (-) True vamp3
TU713292 other downstream 169049 56853567 ~ 56869375 (-) False vamp3
TU713290 other downstream 169049 56853817 ~ 56869375 (-) False vamp3
TU713320 other downstream 186123 56846962 ~ 56852301 (-) True G627323
TU713310 other downstream 203332 56834585 ~ 56835092 (-) True G627314
TU713380 other upstream 5728 57052191 ~ 57058570 (-) False LOC110528040
TU714707 other upstream 825587 57872050 ~ 57873331 (-) True G628575
TU714864 other upstream 1070727 58117190 ~ 58118122 (-) True G628714
TU715047 other upstream 1379712 58426175 ~ 58429371 (-) False LOC110528069
TU715184 other upstream 1645354 58691817 ~ 58694489 (-) False LOC110528083

Expression Profile