RNA id: TU713383


Basic Information

Item Value
RNA id TU713383
length 1433
lncRNA type sense_over
GC content 0.50
exon number 3
gene id phf13
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 57036803 ~ 57046463 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGAGAGTGTGGAGAGTTTTACTGGGAACAGGACGGTGATCCGACAGGGGAAACAGGTGGTGTTCCGAGATGAGGATGGCTCCGGAGAGGATGAGGACATCATGGTGGACTCCGatgATGACTCGTGGGACCTGGTGACGTGTTTCTGTATGAAGCCGTTTGCAGGCCGGGCCATGATTGAGTGTAACCAGTGTAACACGTGGATCCACCTGTCCTGTGCTAAGATCAGGAAGTCCCACGTTCCTGAGACTTATATGTGTCAGAGCTGCAGAGGCACACTGGGCCTGGCAGACACCCGCCGCTCATACCGCTCACGCATTGGCCCCCGCAGACACCTTCTTGACTGACCCCATTGCAAACCCCTTCACCCCTCTCACCTACATTTAGACCATGCCCCATACGGTTCTAACCCCAACCCGGTCCTGTAACGCATGCCCCAGGCCAGCCCTTTCGTTTTGTCCCTGACCCCAGTCCTACCCCATGCCCCAGGCCCTTTTCCTCACCCCTATTGTGTCGACTAAGCCTACTAGCCATCCCTCGCGTTCTTCAACACCCCCAAACTAAACCGATCCGAGTGCTATTTAAGATTTATTATACATTTGACGGTTTCTCTCTGCTTCCTTCCGGACTCTGTGTGCGTAAGTCAAtcactgaatgtctgtctgtagTAGTACAATAGTTGACCAGTAGGGTTGGACTCCGTAGTCTAGTCTGGCTGACCGGTTAGCTCCGACTGGATAGAGACTAGCGACGCATCTCGCATGAACAGTGGAAAGCTGTCTTCATTCTTAAACTGTCGGAGAGAATGGCCTATAGAGCTGCCACCCAACAGTGTGCATTTTGGGACGTTGGCCTTTTGCACTTATTTCATGCGTTAAAGGGGTGTGTTGACTTGCCAACCCCTTCTCCCCCAACCACCCTCTCAACTAGGTGGTTGGGGGAAGCCTTTGTCTAAAGCCTCAAGCAGAGGGTCTGTAGATAATGATGTCCagttctatactgaataTTAAGCCTTGAGACCTGGATTGTGTGctgttcagagggtgaatgggcaagacaaaatatttaagtgcctttgaactgggtatggtagtaagtgcctgttgcaccagtttgagtgtgtcaagaactgcaacttgacacaactgtgggaaccattggcatcaacatgggccagcatccctgtggaacgctttcgacaccttgagtCCATGGCCCGGACAATTTTTatgtatgtattttatttaactaggcaagtcggttaagaacacattcttatttacaattactgcctaccccggccaaaccctaacaacaCTAGTCCAATTGTGGGCCgacctttgggactcccaatcatggccagttgtgatacagcctggaattgaaccagggtctgtagtgacacctctagcattgaaatgcagtgccttgga

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU713381 lncRNA downstream 1814 57032850 ~ 57034989 (-) True G627381
TU713434 lncRNA downstream 14030 57021889 ~ 57022773 (-) True G627432
TU713409 lncRNA downstream 49091 56984344 ~ 56987712 (-) True G627408
TU713343 lncRNA downstream 132025 56904400 ~ 56904778 (-) True G627346
TU713340 lncRNA downstream 138268 56898092 ~ 56898535 (-) True G627343
TU713377 lncRNA upstream 14459 57054388 ~ 57058570 (-) True LOC110528040
TU713481 lncRNA upstream 76361 57116290 ~ 57117047 (-) True G627477
TU713519 lncRNA upstream 104465 57144394 ~ 57201631 (-) True G627505
TU713571 lncRNA upstream 197659 57237588 ~ 57237990 (-) True G627555
TU713580 lncRNA upstream 249522 57289451 ~ 57298281 (-) True G627563
XM_036983592.1 mRNA downstream 19527 56881331 ~ 57017276 (-) False LOC110528035
XM_021609822.2 mRNA upstream 16475 57056404 ~ 57058621 (-) False LOC110528040
XM_036983600.1 mRNA upstream 16475 57056404 ~ 57059527 (-) False LOC110528040
XM_021609823.2 mRNA upstream 227513 57267442 ~ 57305408 (-) False cdc42
XM_021609825.2 mRNA upstream 230457 57270386 ~ 57305408 (-) True cdc42
XM_021609827.2 mRNA upstream 365818 57405747 ~ 57441998 (-) False LOC110528043
TU713291 other downstream 167352 56853817 ~ 56869451 (-) True vamp3
TU713292 other downstream 167428 56853567 ~ 56869375 (-) False vamp3
TU713290 other downstream 167428 56853817 ~ 56869375 (-) False vamp3
TU713320 other downstream 184502 56846962 ~ 56852301 (-) True G627323
TU713310 other downstream 201711 56834585 ~ 56835092 (-) True G627314
TU713380 other upstream 12262 57052191 ~ 57058570 (-) False LOC110528040
TU714707 other upstream 832121 57872050 ~ 57873331 (-) True G628575
TU714864 other upstream 1077261 58117190 ~ 58118122 (-) True G628714
TU715047 other upstream 1386246 58426175 ~ 58429371 (-) False LOC110528069
TU715184 other upstream 1651888 58691817 ~ 58694489 (-) False LOC110528083

Expression Profile