RNA id: XM_021609823.2


Basic Information

Item Value
RNA id XM_021609823.2
length 2701
RNA type mRNA
GC content 0.45
exon number 6
gene id cdc42
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 57267442 ~ 57305408 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTAACATGTCACGCATTACGTTCTACGCACGTGCCCCTGCACTTTTGACTAGAAAGCCCCTAGCGTGAACCTGCCAACGCCCGCCGCAGAGACACAAATAAAGAGGATACGATCTTGAATGAGTAAAGAGGATTCTAAAGCACAGCTATGCAGACGATCAAATGTGTTGTGGTGGGGGATGGAGCTGTGGGTAAAACCTGTCTGCTCATCTCCTACACCACAAACAAGTTCCCCTCTGAATACGTACCCACGgTGTTTGACAACTATGCTGTAACTGTAATGATAGGAGGGGAGCCCTACACCCTGGGGTTGTTTGACACTGCAGGTCAGGAGGACTATGACAGGTTACGGCCTCTGAGTTACCCCCAGACAGACGTCTTCCTCGTCTGTTTCTCCGTCGTATCCCCCTCTTCCTTCGAAAACGTAAAAGAAAAGtgggtTCCAGAGATCACCCATCACTGTCCAAAGACCCCGTTCCTGTTGGTGGGGACTCAGATAGATCTGCGAGACGACCCGTCCACCATAGAGAAGCTGGCCAAGAACAAGCAGAAGCCCATCACTCCTGAGACGGCAGAGAAACTGGCCAGAGACCTCAAGGCTGTCAAATACGTTGAGTGCTCAGCTCTCACGCAGAAAGGCCTAAAGAATGTGTTTGATGAGGCGATACTGGCTGCGCTGGAGCCTCCCGAGCCCAAGAAGAAACGCAAATGTGTGCTGCTATGAGTGACTCCACCCCTCACACACATTTACACCActtcacacacaccctcacccGCCCATCCCATCCCTTGCTCTGCTAAGGCTGATTGACAGCCATTTACTCTGAAGCGAAGTATAAAAACAAACAACGAGTTTCCGATTAGACTGCAATAAACCAGCGGGCCGACGGATGGAGAGACAGAAGTGAACCTAACCCTGCTTGTAACCGTGACTATCATGGCCACACTCCTATTCCAGTTAGAACAGTAAGTATGAGCCTTTAGATGTGTGACAGACAACCCAGTCCTGCGTAATCCGTGCCTCTCAGTAGGctaaagtggcttcctctcctcatcttaaTCTACACTGATCTCACAGTAAAGTTAGTGAAAGCAATATGATGGATGCCCACTGAGCATTGGCTTTAAACTTCagggaaggagacaaggagaggcagTAACTATAGACTGAGATCCAGCCCTGCACTCAAGGGAAGGCCAAGACCATGTCCCTTTTTACTATCCAAAGGGTTTGAACCATGCCGGCAACACACAGGTGACATAGGCTCTCATAAAAGTGTCATCTCTCATAGGTGATTTAGGAAATCAGGCTAAACTGAACTTTGACTTTTAAACTGTCTTTGACATCTTGCCCTGTCAGTGATGTCGATTGGCTCTTAGTCATCCATCTTCTTTGCAGCCATTGGCCAGTTAGCCGTTCTGAAAGACCTATGCTCCACCCCCAAATGAAATAGCTGCTGCATTATTAATCCCCACCCCTCTTGATGAGCACGTCAAGTGCCCAATCCTGCTGCTCCACCTCCAAAACCACCTGAAGTAGTGCTGAGAGTAGCCTTTTTCTTTGCCAATGTCTCCCCTCCACATGACAGAACAGAAGTCTGATCATAGAAACTTCTTTCTCAAATATGCCCCTACCCCCGGGGCACTTTTGTAGATCTTAATAAACTGGATAGGGAAACATTTTATTACCATATTGTTCATACCTATCCAATCCTTtcagaactgtagaactgtactGTAGGGGAAGAGGCTAGGTGTAAATTAGGGACTGGCATTACTAAATATCTAAACTAAAGGCATCCCGTAGCAATGGGTCTTGATGCAGGAATTGGCCTTTTGAAGCAGGGAACATAAACAGTGTTAGCAGAACAAGTGGTGTGTGCTTAATGTGTTGCTAAGGTCCAACATTGTCAAAACGTTATGGTAACCATAGAATTAGAATTGGTAGAGCTGACATGCCCCGTTCAAAGCAACGTTCTATAGTAGGTACACCTGCGGCCATATTTTATGACCTATTTGAATTGTTAATTAATTGATGCTTATTGAATCAGAATTCTGTGCCACATCAGAATTCTGTGCCTTTCTCAGTGTTTCATACTGTCATGCTGCAATGGCAATGCTGTGGTGCTGCCATGATACTGTATGTGTACCTCAAAAACATCTGTGGTCTGAGGGATTTGTCTGTTCTATTACTTTTAATTCTATGGTGTTAACGTTGTCGAAATGTTGTTGAACCTGCTGGTGATGCATGTAGATGAGCCCCTGGTCTCTGAGATGATTGGTTAACAGATTTAATGATGTAAGCTGGCACATGTCAATGTAGGCTCCAGATATTTTTACCAAAATCGTTTTTTTCTTTTCAGTTGTGCGGTTTTTGATTTTATAAAAAGGTTACTTCCTCTCCTTTTACATTTTAGGGGCTGGAACTCAGCTGAACTCTGACTCACCAGCTAGAAACACTCATTGGAGTTCATTTAAACCTTCCAATGACAGAAGAGTGTCTGTTAAACCTGGATCGTGATTGGTTGATTTGACTGGTAGCTCAGAGTTGGGTTGACATGCAGCCCAAGTcatttattatattgttattattataaccTATCGTTGTTTTGGTGCAAAACCAAATGCTTTGTCTGACGTCTGTTCTTTGTATAtgcattctttaaaaaaaaatattaaacttATACCTTAATTGCCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU713571 lncRNA downstream 29452 57237588 ~ 57237990 (-) True G627555
TU713519 lncRNA downstream 65811 57144394 ~ 57201631 (-) True G627505
TU713481 lncRNA downstream 150395 57116290 ~ 57117047 (-) True G627477
TU713377 lncRNA downstream 208872 57054388 ~ 57058570 (-) True LOC110528040
TU713383 lncRNA downstream 227513 57036803 ~ 57039929 (-) True phf13
TU713645 lncRNA upstream 47673 57353081 ~ 57353669 (-) True G627617
TU713506 lncRNA upstream 156512 57461920 ~ 57541619 (-) True LOC110528045
TU713749 lncRNA upstream 209400 57514808 ~ 57517147 (-) True G627714
TU713499 lncRNA upstream 273640 57579048 ~ 57596055 (-) False LOC110528047
TU713500 lncRNA upstream 273640 57579048 ~ 57602042 (-) False LOC110528047
XM_036983600.1 mRNA downstream 207915 57056404 ~ 57059527 (-) False LOC110528040
XM_021609822.2 mRNA downstream 208821 57056404 ~ 57058621 (-) False LOC110528040
XM_021609820.2 mRNA downstream 220979 57038424 ~ 57046463 (-) False phf13
XM_021609819.2 mRNA downstream 223980 57038424 ~ 57043462 (-) False phf13
XM_036983594.1 mRNA downstream 250166 56881331 ~ 57017276 (-) False LOC110528035
XM_021609827.2 mRNA upstream 100339 57405747 ~ 57441998 (-) False LOC110528043
XM_036983602.1 mRNA upstream 100339 57405747 ~ 57441999 (-) True LOC110528043
XM_036983603.1 mRNA upstream 156512 57461920 ~ 57505609 (-) False LOC110528045
XM_021609829.2 mRNA upstream 156512 57461920 ~ 57505611 (-) False LOC110528045
XR_005052615.1 mRNA upstream 156512 57461920 ~ 57505611 (-) False LOC110528045
TU713380 other downstream 208872 57052191 ~ 57058570 (-) False LOC110528040
TU713291 other downstream 397991 56853817 ~ 56869451 (-) True vamp3
TU713292 other downstream 398067 56853567 ~ 56869375 (-) False vamp3
TU713290 other downstream 398067 56853817 ~ 56869375 (-) False vamp3
TU713320 other downstream 415141 56846962 ~ 56852301 (-) True G627323
TU714707 other upstream 566642 57872050 ~ 57873331 (-) True G628575
TU714864 other upstream 811782 58117190 ~ 58118122 (-) True G628714
TU715047 other upstream 1120767 58426175 ~ 58429371 (-) False LOC110528069
TU715184 other upstream 1386409 58691817 ~ 58694489 (-) False LOC110528083
TU715185 other upstream 1386409 58691817 ~ 58695767 (-) True LOC110528083

Expression Profile