RNA id: XR_005052615.1


Basic Information

Item Value
RNA id XR_005052615.1
length 6655
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC110528045
representative False

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 57461920 ~ 57541619 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATCTCTGGTTGCCCAGCCTTGTGACTTCCTATGCCATGAGATTGTTATATGCGTATGTAGCTGCTCGCGGGGTTCTAAATGGGACAATGTGACGGGTCGGAAGTGACAGCCTTAACCGTGTGGGGTTAACGATTAAGCCAGGTACGGGCCGTTACCGTTACCAGGCATGCATACCGGCACCCACGCATCAGGCTGCAGCACACATTATAACAGAGTGCAGGATATGAGACAACCGTTTTGAGGCGTTCAGCAGTGCGCTCTGTTCAGCGTCTGTTCACTCGTCTCCTCTGTGGACTTCTGCGTTTTAGGTTAACAGCAGCCAGAGCGCTGAGGGGAAGTGTTCTCCTGTAGGGCTGCTCCGTAACTATATCCTTGTGCCGCAGCCCTTTAAATACTCCTCATAAAATAGCCACTTGGTGAAAGGTGAGACCTTCCCAGCCCAGGACACGGTCTGGAGCGAGCTAGTCTGAAAGGACCGTCAGAGCGCGTGCAGGACTGACCTGCGCTCTTGGATGACTTTCTGAAAAGAACTTCGGGCTACTAGCTGGACCTGCAATACTGCATGTACTTTTTCATACCAACTTTTCAATACTTTTTGGTTACCAGTCGTTGTTGACCAGATAAACattggtttgtttgtttttgctctcttttaaaaatatataattggtTCATTCTTCTATACATCTGCCTACAGTGCTTACGCAGTGAATGGAGGACATACTCCAGCTTCTCCCGAAGCACCGGCAAATTCTCACACAGGCCTGGGGGAGAGCAGCTACTCACACCTGCCTTTGCAGGAGCTTAGTTGAGCTTTCAAAACGTTTTTTACCACTTAATTTTGCGTTCATGACCACACCTGAGTGCCACTCACCAACATTCTTTAATGGGATAAATTCACTTGTGAGATCAGGTTATTAAAAACCGATCAAGGGAAATCTAAACCAACCATCCCACACCTTTTTGCCATAGCCTATATTTGTAATTCAGTCTACTGTCCTCAAAAGCTTCCGCATGGTACTTTGGTCGAAAGAGCAAGACCAACCGCCGGACACCGACATGTCATCCGGGGCAATAGAAATGAAGAAAGTGGTGCCACCGGTGTACCTCCACTCCAACGGCTCTGTTCACCCAGCCATCCTCACCGATGACCCTGAGGAGATGAGACCGGAGGAGATGAGACCGGAGGAGAGGGGCGAGTATGAGCTCACAGAAGTGACATCCTTCACAGACAGGTCTGGTGAACCGGGAGATGAAGGCCGGGAGATAGTGGTGATAGACTGCAGGGCGAATGCCAAGGGCCAGCGCGAGGAGGACGCTCTCCTGGAGAATGGCAGCCAGAGCAACGAGAGCGACGACATAAGCACTGACCAGAGCCCAGAGCCACCAGCGCCGTTAAAAGAGACCTCCTTCTCCATCGGCCTCCAGGTGGTCTTGCCATTCCTGCTGGCTGGGTTCGGGACGGTGGCGGCGGGCATGGTGCTGGATATTGTTCAGCACTGGACGGTGTTTACAGAGGTGACGGAGGTCTTCATCCTGGTCCCAGCGCTGCTGGGGTTAAAGGGCAACCTGGAGATGACACTGGCTTCCAGACTGTCCACagcgGCTAATATTGGTCAGATGGACTCAGCCAAGGACATGTGGAAGATGATCGTTGGAAACCTCGCCCTCATCCAGGTCCAGGCCACGGTAGTAGGGTTCCTGGCGTCCATCGCTGCGGTGATCTTTGGCTGGATCCCAGAAGGGAACTTTAGACTGGGACATGCTATCCTGTTGTGTGCCTCCAGTGTGGCAACCGCATTCATCGCTTCTCTGATACTAGGGATCATTATGATTGGTGTAATCATCGCATCCAGGAAGGTGGGCATCAACCCTGACAATGTGGCCACGCCCATCGCTGCCAGTCTGGGAGATCTGATCACCCTCTCTCTGCTGGCTGGCATCAGCACAGGACTGTACAAGGAGCTGGAGTTTAACGACTATGCCAACCCGTTGGTGTGTGCTGTGTTTGTGGCGCTGACCCCTCTGTGGGTGCTGATCGCTCGGAGGATCCCCTCCACCAGAGAGGTGCTCTACTCAGGCTGGGAACCTGTCATCATTGCCATGGCAATCAGCAGTGTTGGGGGTCTGATCCTAGATAAGACCGTGTCCAACCCCAACTTCGCTGGCATGGCTGTCTTCACTCCTGTTATCAACGGTGTGGGAGGTAACCTGGTAGCGGTGCAGGCCAGTAGAATCTCCACCTATCTGCACATGAATGGTATCCCCATGGGagaccctgaccccaaccccagGAAATGCCCCACCCCCTGCACATCCTTCTTTGGTTCCAatGTGAACTCTCGTTCAGCACGGGTGCTCTTCCTCCTGGTTGCTCCAGGTCACCTGGTCTTCCTCTACACCATCAACTCCATGCAGGGAGGACACACCACGCTAACATCCATCTTCATAGCCTTCTACATGGCTGCTGCATtactgcaggtgtTGATCCTGTTGTACCTGGCTGACTGGATGGTCCACTGGATGTGGAGTAGGGGGATGAACCCTGATAACTTCTCTATTCCTTACTTGACGGCCCTGGGAGATCTGCTGGGGACCGGCTTCCTGGCCCTCTGCTTCCATGTCCTCTGGCTCAttggagacagagacactgatgtgggagactgAGCACACAGCTGGACAGCATACATATACAGCATCAATTCGGGCTCACCGGAAAACAACCTGAACAACTGAACTGTACAGTATCTCCCTCTGGACATCGGAACAACTGAATCACTTTCAGACCCAGACCTCAACCCTGACCCCTTGACCTCCAATCTCCCCCCAAACCCCTCCCCCTGGGTCACAGACTATGCCatgttttctttatttgactaaaTAAGAGTTTTACTACTAttgtttttattgttattatgaTGACGATGATTATGATTATTATTGTTAATAGTGAATTTGATAAGAATCTATATCTGTTTTACCATTGGGTGGGTGAATCCTCATTATTTTCAATGGGGACATTCTCCCTTGGGCCAGTCACATTGGCAGCATTTGTAAAGATGAGCTCAATCTTAAAGACTTgaaatgaagacagacagacagcaaaaaaaaCTCACACAAGCCTAGAATGCTTAATCACCAAGTGCTATACGTATAAAGAGATTAATACATTTTTAAGGGACCCTTCCAATTTGCCTTGCCTTGAGAGTAGTGATTCAGTGGGGACAGCTCCACAGGGGCCCGGACCAGAATGTAGAGACCTGAATCCGCTTAGGTAACAACCCCCCAACCCTGTTAAAGGATGACTGAACACTAACCTGAAAAGAAACAGGAAGATTTAAGTTGCCCTTAAGcacagatctagaatcagtttaCCCTCtccaaatcctaaccttaaccattgggGAGGGATGAAAACAtaactgaccctgtatcagtggtAAGAGGCAACCTCAACCTAGTCCATGGACATAGGTCCTGCCAGATGGTACAGTCAGGTGCCACATTATGTTTCATTGGTGACAGTTCGATCTGGCACCTCGCCAGATCGTACTGTCAGGTACCACATTATGTTTCAAGGGTCACCAAGGAGGTGCCAGATCGTACTATCAGGTACCACATTATGTTTCATAGGTCACCGAGGAGGTGCCAGATCGTAGTGTTAGGTACCACATTATGTTTCATAGGTCACCAAGGAGGTGCCAGATCGTACAGTCAGGTACCACATTATGTTTCATAGGTCACCAAGGAGGTGCCAGATCGTACTGTCAGGTACCACATTATGTTTCATAGGTCACCAAGGAGGTGCCAGATCGTAGTGTCAGGTGCCACATTATGCTTCATAGGTCACCAAGGAGGTGCCAGATTGTACGGTCAGGTGCCTCATTATGTTTCATAGGTTACCAAGGAGGTGCCAGATCGTACAGTCAGGTGCCAAATTATGTTTCATAGGTCACCAAGGAGGTGCCAGATCGTACGGTCAGGTGCCACATGTTTCATAGGTCACCAAGGAGGTGCCAGATCGTACAGTCAGGTGCCACATTATGTTTCATAGATCACCACCAAGGAGGTGCCAGATCGTACGGTCAGGTGCCACATTATGTTTCATAGGTCACCAAGGAGGTGCCAGATCGTACAGTCAGGTGCCACATTATGTTTCATAGATCACCACCAAGGAGGTGCCAGATCGTACAGTCAGGTGCCACATTATGTTTCACACTCAGTTGGAGggttgttttttaaattaaagtCAACCCAAATTCTTGCCAACCATGTCCTTAGTGGTCCTTGAGGCCTCAACGCTCAATAGCAAGGTTTCAACACCTCCTTGTTGTCCCATGAATCCTCCTAAAGGGCTACGATTGTGACATTTCTTCATTTACATTTGTTTCTTCTTTGTTTTCACACAAACACTTAGACAGAAAATTGTGCTTTGTTTGTCAGGCTGGCCATCTGTTTGTGGCAGCCTgttggttacacacacacacacaaaactctgCTTATCGCTGGATTCACTGAGGTTAGAGTGGCTTTACTGGGAGGCCAGAGGGAGGTCAGAGAGGGTAGGGACAGAGCTCTTATTGAGACAGAGGCCATTCCAGGTGACATCCTATCTAGTGCAAGGACTTAGGAGCATATGTTAAAGGGTGGGGTAAGTTTTCCACTTGATCACACTGCTGCCTAATGCTGTAGTGACAAGACCTGTTTGGTGTGTTCTGATTAGAAGGCTTTAATGGGCTTCATTAGTTAGTGAGGAAAGACAGGATGTTGAGGGAGGAATTGTCAAACCAATATCGCCTGCTTAGGAATATCATGCAAACATCTCgctcgctctttctgtctctcgctctctcaagtTTTCTCAAATGGTACAAACAACATCAGCGATCTTCTTGAGTTGAAGCAACTCAAGGCCTGTCCATGCTGACTACCACACTTCCTTAATGTCTGTTGTGCATTGTACATACACACTGTGCAGCTGACCTACAATATCTGCCACAGACGCCATGCTTCAAAATGGCCTCCTATCCTACCCACATGAACATACTGTCAGTATAGACACTCTAATTCTCGTAAGCAGCAGAGCCCAGCTTGATGGTGAAATGCATGTGTTATCATCTGATGCTTTGTTATCTGGTGTTAAATTGATATGTTGTTTTAAGGGGCCAGCAGAGTGCATGTGCAGGGCACATAACATGAATATGCAAAACGTGTGCATTATGAGTTAAGTTTCCTTCTCTTTAAAAGATAATGTATCCTTCTTAGGTTTGACACAATTTACAAAGTGGAAGTTGTGTCCGTTATTAGATGTATTCTTTAAGTTCATAATTTTTCTTAATCCTTCTGTGATCTTTATGTGTTAGATAATGATTATGTCATGTTTATGATTGAGAGCCCCAGTGGGGTTTAGTGTCACTGTTGGAAAGGACtgtaatatacacacacaggcaccagAGGGCAACATTGTCATATGAGTGAATATGAGACAGTGCTGATAGTGATAGAGGCTGTTCACTATTAGCGTCATCTAGATTATAGAACCTGTATCCAAGATTCTAAAGAACCTGTGTTTTCTAGATTCTAGAATTTGTATTTTCTTGATTCTAGAATCTGTGTCCATGATATAATTGCATACCTTCTGGATTCTAGAGCCTGTATCCAAAATTCTATTCTAAAACCTGTCCTCTGTATTCTTGAGGCGGAACCCTGGATCTAGAACCTGGGTTCTCTCTGCTGTCTTACTGAACCTGTGCCAGCGTTCTGCCCCAGTACGGATATGAGGTTGTGAATACTTCTTCAGGGGAAGGAATGCTTTGTCTATTTATTTTTAGATGCACACAAACAAATTGTATATACTATATTTATTCTATAAATAAGgtgtttatttttcatttaatttTGTCTCGGTTCTGTCGCTGTTTTTGTAATTGTTTCTCATTTAATTTTTTTGTTCATCCTTTTTTGGGTTGTATCCAGCCAGTAGAGCTTCAGCGCTGCCGCGGTAGATTAGCGCCTAGGCTAACAAACAACAGTGTGGGTGCCTAATATCTGATGAACCTCACACACCTTACACCCCCTGCCCTCGGACAGGGACCCAAACATAGAAGGCCTTAACCTATCAGGAACCAAGCTCAACACATAGTAACCAATCAGGAACTAGGCTCACCACAGAGTAGAATCTCTCTAATTAGCTTTTATTAATAACTGACATACCTTGATTTGATTTTGTAatgtaatgaatgaataaataGTCTATGAGAGAGGCTGCATGGTTGCAATGGCTGCAGTGTTTGGGAATCACTAAGGCCAGAACCTTCAATTGAGAACATAAATTAATAGATGGATATTGTAAACACTCTGGCTCTGACTAGAACAGACTAGTGGTCAGACAACACAGAAGTATAACGGATGGATCATTTCTCTATAACCACATTCCTCAACCCTCacctcccagacacacacacacactactagcACAAAATGTCCATACAGATATATtggttacacacacaaacacacacgcatacactgtATTTGGAACTGTGTGCTCCCCCTGCTGTCCCCCTCTGTAACCCTGTAACTGTAGTGGGGTTCACAATCTGCAGGACTTTATAAATTGCTGGAAATAAAGGACTATATTATTTTGTACCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU713645 lncRNA downstream 108251 57353081 ~ 57353669 (-) True G627617
TU713580 lncRNA downstream 163639 57289451 ~ 57298281 (-) True G627563
TU713571 lncRNA downstream 223930 57237588 ~ 57237990 (-) True G627555
TU713519 lncRNA downstream 260289 57144394 ~ 57201631 (-) True G627505
TU713481 lncRNA downstream 344873 57116290 ~ 57117047 (-) True G627477
TU713749 lncRNA upstream 9197 57514808 ~ 57517147 (-) True G627714
TU713499 lncRNA upstream 73437 57579048 ~ 57596055 (-) False LOC110528047
TU713500 lncRNA upstream 73437 57579048 ~ 57602042 (-) False LOC110528047
TU713498 lncRNA upstream 77628 57583239 ~ 57602042 (-) False LOC110528047
TU713501 lncRNA upstream 77628 57583239 ~ 57596055 (-) True LOC110528047
XM_036983602.1 mRNA downstream 19921 57405747 ~ 57441999 (-) True LOC110528043
XM_021609827.2 mRNA downstream 19922 57405747 ~ 57441998 (-) False LOC110528043
XM_021609823.2 mRNA downstream 156512 57267442 ~ 57305408 (-) False cdc42
XM_021609825.2 mRNA downstream 156512 57270386 ~ 57305408 (-) True cdc42
XM_036983600.1 mRNA downstream 402393 57056404 ~ 57059527 (-) False LOC110528040
XR_005052616.1 mRNA upstream 13617 57519228 ~ 57523173 (-) True LOC118965302
XM_036983604.1 mRNA upstream 28666 57534277 ~ 57546252 (-) False klhdc8a
XM_036983608.1 mRNA upstream 28666 57534277 ~ 57546252 (-) False klhdc8a
XM_036983605.1 mRNA upstream 28666 57534277 ~ 57553475 (-) False klhdc8a
XM_036983607.1 mRNA upstream 28666 57534277 ~ 57553656 (-) False klhdc8a
TU713380 other downstream 403350 57052191 ~ 57058570 (-) False LOC110528040
TU713291 other downstream 592469 56853817 ~ 56869451 (-) True vamp3
TU713292 other downstream 592545 56853567 ~ 56869375 (-) False vamp3
TU713290 other downstream 592545 56853817 ~ 56869375 (-) False vamp3
TU713320 other downstream 609619 56846962 ~ 56852301 (-) True G627323
TU714707 other upstream 366439 57872050 ~ 57873331 (-) True G628575
TU714864 other upstream 611579 58117190 ~ 58118122 (-) True G628714
TU715047 other upstream 920564 58426175 ~ 58429371 (-) False LOC110528069
TU715184 other upstream 1186206 58691817 ~ 58694489 (-) False LOC110528083
TU715185 other upstream 1186206 58691817 ~ 58695767 (-) True LOC110528083

Expression Profile