RNA id: TU713506


Basic Information

Item Value
RNA id TU713506
length 219
lncRNA type read_through
GC content 0.43
exon number 2
gene id LOC110528045
representative True

Chromosome Information

Item Value
chromosome id NC_048571.1
NCBI id CM023225.2
chromosome length 90918291
location 57461920 ~ 57541619 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctcacacacacacacacacacacacacacacactactagcACAAAATGTCCATACAGATATATtggttacacacacaaacacacacgcatacactgtATTTGGAACTGTGTGCTCCCCCTGCTGTCCCCCTCTGTAACCCTGTAACTGTAGTGGGGTTCACAATCTGCAGGACTTTATAAATTGCTGGAAATAAAGGACTATATTATTTTGTACCACT

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU713645 lncRNA downstream 108251 57353081 ~ 57353669 (-) True G627617
TU713580 lncRNA downstream 163639 57289451 ~ 57298281 (-) True G627563
TU713571 lncRNA downstream 223930 57237588 ~ 57237990 (-) True G627555
TU713519 lncRNA downstream 260289 57144394 ~ 57201631 (-) True G627505
TU713481 lncRNA downstream 344873 57116290 ~ 57117047 (-) True G627477
TU713499 lncRNA upstream 37429 57579048 ~ 57596055 (-) False LOC110528047
TU713500 lncRNA upstream 37429 57579048 ~ 57602042 (-) False LOC110528047
TU713498 lncRNA upstream 41620 57583239 ~ 57602042 (-) False LOC110528047
TU713501 lncRNA upstream 41620 57583239 ~ 57596055 (-) True LOC110528047
TU713877 lncRNA upstream 168868 57710487 ~ 57710845 (-) True G627835
XM_036983602.1 mRNA downstream 19921 57405747 ~ 57441999 (-) True LOC110528043
XM_021609827.2 mRNA downstream 19922 57405747 ~ 57441998 (-) False LOC110528043
XM_021609823.2 mRNA downstream 156512 57267442 ~ 57305408 (-) False cdc42
XM_021609825.2 mRNA downstream 156512 57270386 ~ 57305408 (-) True cdc42
XM_036983600.1 mRNA downstream 402393 57056404 ~ 57059527 (-) False LOC110528040
XR_002474183.2 mRNA upstream 37426 57579045 ~ 57602101 (-) False LOC110528047
XM_021609834.2 mRNA upstream 171275 57712894 ~ 57729312 (-) False LOC110528050
XM_021609835.2 mRNA upstream 171275 57712894 ~ 57729317 (-) True LOC110528050
XM_021609837.2 mRNA upstream 210456 57752075 ~ 57758531 (-) True LOC110528051
XM_021609838.2 mRNA upstream 240516 57782135 ~ 57789159 (-) False LOC110528052
TU713380 other downstream 403350 57052191 ~ 57058570 (-) False LOC110528040
TU713291 other downstream 592469 56853817 ~ 56869451 (-) True vamp3
TU713292 other downstream 592545 56853567 ~ 56869375 (-) False vamp3
TU713290 other downstream 592545 56853817 ~ 56869375 (-) False vamp3
TU713320 other downstream 609619 56846962 ~ 56852301 (-) True G627323
TU714707 other upstream 330431 57872050 ~ 57873331 (-) True G628575
TU714864 other upstream 575571 58117190 ~ 58118122 (-) True G628714
TU715047 other upstream 884556 58426175 ~ 58429371 (-) False LOC110528069
TU715184 other upstream 1150198 58691817 ~ 58694489 (-) False LOC110528083
TU715185 other upstream 1150198 58691817 ~ 58695767 (-) True LOC110528083

Expression Profile