RNA id: TCONS_00034211


Basic Information

Item Value
RNA id TCONS_00034211
length 510
lncRNA type retained_intron
GC content 0.49
exon number 3
gene id XLOC_017160
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 9781932 ~ 9823810 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTCTACATGCTCTTTTGCGAGCGCAACCCAGAATTTGCAGAGAAAGGAAAAGTGTCCATCGTCTCGCACTCGCTCGGCTGTGTCATCACCTTCGACATCATGACAGGCTGGGATCCTGTCCGCTTTGTTCATGAAGATGTGCCAGATGTGATGGAGGCTGATGTGAGCAGACAAGAGCGTCAGTTGCTTGAAGAGCTTCGGCTCACTTACTTAAGAATAAGGGATTTGGAAGACAGGCTTCAGAATTTCCAAACCTCATCCTCAAGACCATCTCCAGCCCTAAAATTCAAGGTGGAGAACTTCTTCTGTATGGGATCTCCTCTGGCTGTGTTTTTGGCTTTGCGAGGGGTTCGTCCTGGAAGCGGCGGAACACAGGACCACATTCTGCCCACATCCATCTGCCAGCGGCTATTCAACATCTTCCATCCCACTGATCCTGTAGTGAGTGTGATTAGACTGCTGTGTAAATAAAGCCTCGGATCAGATGCATCCGATTTTTTCCCCatgct

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004620 phospholipase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-18 Predicted to enable phospholipase activity. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 28. Orthologous to human DDHD1 (DDHD domain containing 1).

Ensembl:

ensembl_id ENSDART00000152587

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034209 lncRNA upstream 5367 9782940 ~ 9791721 (+) False XLOC_017160
TCONS_00034193 lncRNA upstream 656538 9128829 ~ 9140550 (+) False XLOC_017150
TCONS_00036371 lncRNA upstream 789752 8998775 ~ 9007336 (+) True XLOC_017148
TCONS_00036370 lncRNA upstream 799625 8996867 ~ 8997463 (+) True XLOC_017147
TCONS_00036544 lncRNA upstream 1719369 8071324 ~ 8077719 (+) True XLOC_017144
TCONS_00036545 lncRNA downstream 150022 9951564 ~ 9953982 (+) True XLOC_017162
TCONS_00036546 lncRNA downstream 266393 10067935 ~ 10068758 (+) True XLOC_017163
TCONS_00036547 lncRNA downstream 419873 10221415 ~ 10225073 (+) True XLOC_017165
TCONS_00034216 lncRNA downstream 687916 10489458 ~ 10490064 (+) False XLOC_017166
TCONS_00036548 lncRNA downstream 687926 10489468 ~ 10490064 (+) False XLOC_017166
TCONS_00034210 mRNA upstream 2772 9785952 ~ 9794316 (+) False XLOC_017160
TCONS_00034206 mRNA upstream 20754 9763364 ~ 9776334 (+) False XLOC_017159
TCONS_00034204 mRNA upstream 102422 9683994 ~ 9694666 (+) True XLOC_017157
TCONS_00034202 mRNA upstream 229083 9474841 ~ 9568005 (+) False XLOC_017156
TCONS_00034203 mRNA upstream 230229 9519391 ~ 9566859 (+) True XLOC_017156
TCONS_00034212 mRNA downstream 27227 9828769 ~ 9848953 (+) False XLOC_017161
TCONS_00034213 mRNA downstream 27335 9828877 ~ 9846873 (+) False XLOC_017161
TCONS_00034214 mRNA downstream 27425 9828967 ~ 9848293 (+) True XLOC_017161
TCONS_00034215 mRNA downstream 364755 10166297 ~ 10220280 (+) True XLOC_017164
TCONS_00034218 mRNA downstream 697162 10498704 ~ 10520821 (+) False XLOC_017167
TCONS_00034207 other upstream 28339 9763367 ~ 9768749 (+) True XLOC_017159
TCONS_00034205 other upstream 74950 9720121 ~ 9722138 (+) True XLOC_017158
TCONS_00034201 other upstream 438958 9355970 ~ 9358130 (+) True XLOC_017155
TCONS_00034199 other upstream 497539 9299434 ~ 9299549 (+) True XLOC_017154
TCONS_00034188 other upstream 801107 8993860 ~ 8995981 (+) True XLOC_017146
TCONS_00034217 other downstream 688079 10489621 ~ 10489890 (+) True XLOC_017166
TCONS_00034225 other downstream 922185 10723727 ~ 10729279 (+) False XLOC_017170
TCONS_00034232 other downstream 2797095 12598637 ~ 12605833 (+) True XLOC_017178
TCONS_00034240 other downstream 3374259 13175801 ~ 13309410 (+) False XLOC_017186
TCONS_00034241 other downstream 3433402 13234944 ~ 13236118 (+) True XLOC_017186

Expression Profile

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